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UBERON:0004225

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Name:respiratory system smooth muscle
Namespace:FANTOM
Definition:"A portion of smooth muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0001830
Synonyms: "apparatus respiratorius involuntary muscle" EXACT [OBOL:automatic]
"apparatus respiratorius non-striated muscle" EXACT [OBOL:automatic]
"apparatus respiratorius smooth muscle" EXACT [OBOL:automatic]
"apparatus respiratorius smooth muscle tissue" EXACT [OBOL:automatic]
"involuntary muscle of apparatus respiratorius" EXACT [OBOL:automatic]
"involuntary muscle of respiratory system" EXACT [OBOL:automatic]
"non-striated muscle of apparatus respiratorius" EXACT [OBOL:automatic]
"non-striated muscle of respiratory system" EXACT [OBOL:automatic]
"respiratory system involuntary muscle" EXACT [OBOL:automatic]
"respiratory system non-striated muscle" EXACT [OBOL:automatic]
"respiratory system smooth muscle tissue" EXACT [OBOL:automatic]
"smooth muscle of apparatus respiratorius" EXACT [OBOL:automatic]
"smooth muscle of respiratory system" EXACT [OBOL:automatic]
"smooth muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
"smooth muscle tissue of respiratory system" EXACT [OBOL:automatic]

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001135(smooth muscle tissue)
part_of:UBERON:0001004(respiratory system)



Children

is a:FF:11960-126C7 (Smooth muscle cells - airway, asthmatic, donor1),FF:11961-126C8 (Smooth muscle cells - airway, asthmatic, donor2),FF:11962-126C9 (Smooth muscle cells - airway, asthmatic, donor3),FF:11963-126D1 (Smooth muscle cells - airway, asthmatic, donor4),FF:11964-126D2 (Smooth muscle cells - airway, asthmatic, donor5),FF:11965-126D3 (Smooth muscle cells - airway, asthmatic, donor6),FF:11966-126D4 (Smooth muscle cells - airway, control, donor1),FF:11967-126D5 (Smooth muscle cells - airway, control, donor2),FF:11968-126D6 (Smooth muscle cells - airway, control, donor3),FF:11969-126D7 (Smooth muscle cells - airway, control, donor4)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11960-126C7 (Smooth muscle cells - airway, asthmatic, donor1)
  • 11961-126C8 (Smooth muscle cells - airway, asthmatic, donor2)
  • 11962-126C9 (Smooth muscle cells - airway, asthmatic, donor3)
  • 11963-126D1 (Smooth muscle cells - airway, asthmatic, donor4)
  • 11964-126D2 (Smooth muscle cells - airway, asthmatic, donor5)
  • 11965-126D3 (Smooth muscle cells - airway, asthmatic, donor6)
  • 11966-126D4 (Smooth muscle cells - airway, control, donor1)
  • 11967-126D5 (Smooth muscle cells - airway, control, donor2)
  • 11968-126D6 (Smooth muscle cells - airway, control, donor3)
  • 11969-126D7 (Smooth muscle cells - airway, control, donor4)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004225 (respiratory system smooth muscle), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


No analysis results