UBERON:0004907
From FANTOM5_SSTAR
Name: | lower digestive tract | ||
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Namespace: | FANTOM | ||
Definition: | "the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] | ||
Xrefs: |
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Synonyms: |
"gut" BROAD [GO:0048565] "lower gastrointestinal tract" EXACT [] "lower GI tract" EXACT [] | ||
Comments: | WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L | ||
Subset: | uberon_slim |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0004921(subdivision of digestive tract) |
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develops_from: | UBERON:0001046(hindgut) |
part_of: | UBERON:0005409(gastrointestinal system) |
Children
part of: | UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10067-101I4 (rectum, fetal, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10654-109B6
- 10657-109B9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
3.49e-79 | FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505 | p@chr18:28860939..28860953, - |
3.49e-79 | FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505 | p@chr18:28860939..28860953, - |
2.87e-53 | FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964 | p@chr15:45950466..45950474, + |
2.87e-53 | FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964 | p@chr15:45950466..45950474, + |
3.74e-53 | FFCP PHASE2:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47b | p@chr6:150777673..150777685, - |
3.74e-53 | FFCP PHASE1:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47b | p@chr6:150777673..150777685, - |
1.31e-45 | FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153c | p3@CDX2 |
1.31e-45 | FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153c | p3@CDX2 |
9.22e-44 | FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400 | p5@CDX2 |
9.22e-44 | FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400 | p5@CDX2 |
1.32e-42 | FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42 | p8@CDX2 |
1.32e-42 | FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42 | p8@CDX2 |
1.48e-40 | FFCP PHASE2:Hg19::chr8:128118744..128118753,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128118744..128118753, - |
1.48e-40 | FFCP PHASE1:Hg19::chr8:39792182..39792188,+#_75bb4d3d88c960d8349cd366f05fbccd | p14@IDO2 |
1.48e-40 | FFCP PHASE2:Hg19::chr13:32790605..32790619,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:32790605..32790619, + |
1.48e-40 | FFCP PHASE2:Hg19::chr3:66354424..66354472,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:66354424..66354472, + |
1.48e-40 | FFCP PHASE1:Hg19::chr10:2328652..2328660,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr10:2328652..2328660, + |
1.48e-40 | FFCP PHASE1:Hg19::chr16:55344418..55344442,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr16:55344418..55344442, + |
1.48e-40 | FFCP PHASE1:Hg19::chr8:128118744..128118753,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128118744..128118753, - |
1.48e-40 | FFCP PHASE2:Hg19::chr9:104610923..104610939,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr9:104610923..104610939, - |
1.48e-40 | FFCP PHASE1:Hg19::chr7:138064518..138064531,-#_75bb4d3d88c960d8349cd366f05fbccd | -, p@chr7:138064518..138064531 |
1.48e-40 | FFCP PHASE1:Hg19::chr3:156822661..156822696,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:156822661..156822696, - |
1.48e-40 | FFCP PHASE2:Hg19::chr2:163302780..163302789,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:163302780..163302789, - |
1.48e-40 | FFCP PHASE1:Hg19::chr3:24797750..24797759,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:24797750..24797759, - |
1.48e-40 | FFCP PHASE2:Hg19::chr10:2328652..2328660,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr10:2328652..2328660, + |
1.48e-40 | FFCP PHASE1:Hg19::chr8:127568784..127568794,+#_75bb4d3d88c960d8349cd366f05fbccd | p6@ENST00000524320 |
1.48e-40 | FFCP PHASE1:Hg19::chr7:87232440..87232448,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:87232440..87232448, - |
1.48e-40 | FFCP PHASE2:Hg19::chr2:127711472..127711475,+#_75bb4d3d88c960d8349cd366f05fbccd | +, p@chr2:127711472..127711475 |
1.48e-40 | FFCP PHASE2:Hg19::chr8:127568784..127568794,+#_75bb4d3d88c960d8349cd366f05fbccd | p6@ENST00000524320 |
1.48e-40 | FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:198324742..198324745, + |
1.48e-40 | FFCP PHASE2:Hg19::chr2:191384465..191384471,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:191384465..191384471, - |
1.48e-40 | FFCP PHASE2:Hg19::chr2:159306961..159306975,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:159306961..159306975, + |
1.48e-40 | FFCP PHASE1:Hg19::chr16:19661585..19661596,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr16:19661585..19661596, + |
1.48e-40 | FFCP PHASE2:Hg19::chr6:8446968..8446983,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:8446968..8446983, + |
1.48e-40 | FFCP PHASE1:Hg19::chr7:12134371..12134377,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:12134371..12134377, - |
1.48e-40 | FFCP PHASE1:Hg19::chr6:31683061..31683070,+#_75bb4d3d88c960d8349cd366f05fbccd | p5@LY6G6D |
1.48e-40 | FFCP PHASE2:Hg19::chr8:128415944..128415958,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128415944..128415958, + |
1.48e-40 | FFCP PHASE1:Hg19::chrX:138909080..138909093,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chrX:138909080..138909093, - |
1.48e-40 | FFCP PHASE1:Hg19::chr4:157174062..157174071,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:157174062..157174071, + |
1.48e-40 | FFCP PHASE1:Hg19::chr8:128415944..128415958,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128415944..128415958, + |
1.48e-40 | FFCP PHASE2:Hg19::chr6:104674708..104674749,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:104674708..104674749, - |
1.48e-40 | FFCP PHASE1:Hg19::chr6:8389389..8389429,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:8389389..8389429, - |
1.48e-40 | FFCP PHASE2:Hg19::chr16:19661615..19661621,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr16:19661615..19661621, + |
1.48e-40 | FFCP PHASE2:Hg19::chr21:37143915..37143924,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr21:37143915..37143924, - |
1.48e-40 | FFCP PHASE2:Hg19::chr13:54830821..54830841,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:54830821..54830841, + |
1.48e-40 | FFCP PHASE1:Hg19::chr2:127711416..127711419,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:127711416..127711419, + |
1.48e-40 | FFCP PHASE2:Hg19::chr8:99425711..99425716,-#_75bb4d3d88c960d8349cd366f05fbccd | p1@ENST00000518956 |
1.48e-40 | FFCP PHASE2:Hg19::chr14:76289395..76289406,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr14:76289395..76289406, + |
1.48e-40 | FFCP PHASE2:Hg19::chr12:68155058..68155064,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr12:68155058..68155064, - |
1.48e-40 | FFCP PHASE2:Hg19::chr4:157174075..157174084,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:157174075..157174084, + |
1.48e-40 | FFCP PHASE2:Hg19::chr7:87232419..87232430,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:87232419..87232430, - |
1.48e-40 | FFCP PHASE2:Hg19::chr2:19707156..19707203,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:19707156..19707203, + |
1.48e-40 | FFCP PHASE1:Hg19::chr9:98505341..98505348,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr9:98505341..98505348, + |
1.48e-40 | FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:66794389..66794398, + |
1.48e-40 | FFCP PHASE1:Hg19::chr7:97958802..97958804,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:97958802..97958804, - |
1.48e-40 | FFCP PHASE2:Hg19::chr7:12134371..12134377,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:12134371..12134377, - |
1.48e-40 | FFCP PHASE2:Hg19::chr13:110258158..110258170,-#_75bb4d3d88c960d8349cd366f05fbccd | -, p@chr13:110258158..110258170 |
1.48e-40 | FFCP PHASE2:Hg19::chr8:128419359..128419367,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128419359..128419367, - |
1.48e-40 | FFCP PHASE1:Hg19::chr2:19707156..19707203,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:19707156..19707203, + |
1.48e-40 | FFCP PHASE2:Hg19::chr12:65277574..65277589,+#_75bb4d3d88c960d8349cd366f05fbccd | p2@FLJ41278 |
1.48e-40 | FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr18:39550015..39550034, + |
1.48e-40 | FFCP PHASE1:Hg19::chr4:71222797..71222807,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:71222797..71222807, + |
1.48e-40 | FFCP PHASE1:Hg19::chr8:128419359..128419367,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128419359..128419367, - |
1.48e-40 | FFCP PHASE2:Hg19::chr8:128259602..128259609,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128259602..128259609, - |
1.48e-40 | FFCP PHASE1:Hg19::chr12:31632584..31632589,-#_75bb4d3d88c960d8349cd366f05fbccd | p20@DENND5B |
1.48e-40 | FFCP PHASE2:Hg19::chr13:32790683..32790693,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:32790683..32790693, + |
1.48e-40 | FFCP PHASE2:Hg19::chr15:60749901..60749904,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr15:60749901..60749904, - |
1.48e-40 | FFCP PHASE2:Hg19::chr6:5491056..5491061,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:5491056..5491061, + |
1.48e-40 | FFCP PHASE2:Hg19::chr13:28541425..28541439,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:28541425..28541439, - |
1.48e-40 | FFCP PHASE2:Hg19::chr1:219739282..219739288,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:219739282..219739288, - |
1.48e-40 | FFCP PHASE1:Hg19::chr1:118658073..118658082,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:118658073..118658082, - |
1.48e-40 | FFCP PHASE2:Hg19::chr1:198324742..198324745,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:198324742..198324745, + |
1.48e-40 | FFCP PHASE1:Hg19::chr5:97747048..97747059,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr5:97747048..97747059, + |
1.48e-40 | FFCP PHASE1:Hg19::chr8:128259602..128259609,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128259602..128259609, - |
1.48e-40 | FFCP PHASE2:Hg19::chr18:53252911..53252918,-#_75bb4d3d88c960d8349cd366f05fbccd | p106@TCF4 |
1.48e-40 | FFCP PHASE2:Hg19::chr2:163302793..163302800,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:163302793..163302800, - |
1.48e-40 | FFCP PHASE1:Hg19::chr3:24797832..24797838,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:24797832..24797838, - |
1.48e-40 | FFCP PHASE1:Hg19::chr9:104610923..104610939,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr9:104610923..104610939, - |
1.48e-40 | FFCP PHASE2:Hg19::chrX:42162203..42162241,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chrX:42162203..42162241, + |
1.48e-40 | FFCP PHASE2:Hg19::chr5:71987749..71987774,-#_75bb4d3d88c960d8349cd366f05fbccd | -, p@chr5:71987749..71987774 |
1.48e-40 | FFCP PHASE1:Hg19::chr8:128807259..128807281,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128807259..128807281, + |
1.48e-40 | FFCP PHASE1:Hg19::chr15:60749901..60749904,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr15:60749901..60749904, - |
1.48e-40 | FFCP PHASE2:Hg19::chr8:128807259..128807281,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128807259..128807281, + |
1.48e-40 | FFCP PHASE1:Hg19::chr13:54830821..54830841,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:54830821..54830841, + |
1.48e-40 | FFCP PHASE2:Hg19::chr9:98505341..98505348,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr9:98505341..98505348, + |
1.48e-40 | FFCP PHASE2:Hg19::chr1:93128331..93128338,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:93128331..93128338, - |
1.48e-40 | FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr12:65466889..65466894, - |
1.48e-40 | FFCP PHASE1:Hg19::chr16:19661615..19661621,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr16:19661615..19661621, + |
1.48e-40 | FFCP PHASE1:Hg19::chr8:127438794..127438800,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:127438794..127438800, + |
1.48e-40 | FFCP PHASE1:Hg19::chr18:39550015..39550034,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr18:39550015..39550034, + |
1.48e-40 | FFCP PHASE2:Hg19::chr13:99661014..99661016,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:99661014..99661016, - |
1.48e-40 | FFCP PHASE2:Hg19::chr8:127438794..127438800,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:127438794..127438800, + |
1.48e-40 | FFCP PHASE1:Hg19::chr2:148148505..148148515,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:148148505..148148515, - |
1.48e-40 | FFCP PHASE1:Hg19::chr7:12134400..12134410,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:12134400..12134410, - |
1.48e-40 | FFCP PHASE1:Hg19::chr4:157174075..157174084,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:157174075..157174084, + |
1.48e-40 | FFCP PHASE2:Hg19::chr4:169559850..169559856,-#_75bb4d3d88c960d8349cd366f05fbccd | -, p@chr4:169559850..169559856 |
1.48e-40 | FFCP PHASE1:Hg19::chr2:127711472..127711475,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:127711472..127711475, + |
1.48e-40 | FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr12:77730114..77730120, - |
1.48e-40 | FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:140054665..140054678, - |
1.48e-40 | FFCP PHASE1:Hg19::chr6:5491056..5491061,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:5491056..5491061, + |