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UBERON:0004907

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Name:lower digestive tract
Namespace:FANTOM
Definition:"the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
Xrefs:
links:

EHDAA2:0000726
FMA:49179
galen:LowerGastrointestinalTract
MA:0000917
ncithesaurus:Lower_Gastrointestinal_Tract

SCTID:279973004
Synonyms: "gut" BROAD [GO:0048565]
"lower gastrointestinal tract" EXACT []
"lower GI tract" EXACT []
Comments:WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
develops_from:UBERON:0001046(hindgut)
part_of:UBERON:0005409(gastrointestinal system)



Children

part of:UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix)


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
3.49e-79FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
3.49e-79FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505p@chr18:28860939..28860953, -
2.87e-53FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
2.87e-53FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964p@chr15:45950466..45950474, +
3.74e-53FFCP PHASE1:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
3.74e-53FFCP PHASE2:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47bp@chr6:150777673..150777685, -
1.31e-45FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
1.31e-45FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153cp3@CDX2
9.22e-44FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
9.22e-44FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400p5@CDX2
1.32e-42FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.32e-42FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42p8@CDX2
1.48e-40FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054665..140054678, -
1.48e-40FFCP PHASE1:Hg19::chr6:5491056..5491061,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491056..5491061, +
1.48e-40FFCP PHASE2:Hg19::chr4:157174108..157174136,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174108..157174136, +
1.48e-40FFCP PHASE2:Hg19::chr7:87232440..87232448,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87232440..87232448, -
1.48e-40FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:55404829..55404833, -
1.48e-40FFCP PHASE1:Hg19::chr7:87049573..87049608,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87049573..87049608, -
1.48e-40FFCP PHASE1:Hg19::chr8:99425711..99425716,-#_75bb4d3d88c960d8349cd366f05fbccdp1@ENST00000518956
1.48e-40FFCP PHASE1:Hg19::chr7:30499737..30499761,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:30499737..30499761, +
1.48e-40FFCP PHASE2:Hg19::chr7:12134400..12134410,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:12134400..12134410, -
1.48e-40FFCP PHASE1:Hg19::chr1:19522690..19522704,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:19522690..19522704, -
1.48e-40FFCP PHASE2:Hg19::chr2:148148505..148148515,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:148148505..148148515, -
1.48e-40FFCP PHASE2:Hg19::chr6:8389087..8389116,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8389087..8389116, -
1.48e-40FFCP PHASE1:Hg19::chr12:31632584..31632589,-#_75bb4d3d88c960d8349cd366f05fbccdp20@DENND5B
1.48e-40FFCP PHASE2:Hg19::chr8:128260156..128260173,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128260156..128260173, +
1.48e-40FFCP PHASE1:Hg19::chr21:37143915..37143924,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr21:37143915..37143924, -
1.48e-40FFCP PHASE2:Hg19::chr18:28720966..28720970,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr18:28720966..28720970, +
1.48e-40FFCP PHASE2:Hg19::chr1:78621016..78621042,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:78621016..78621042, +
1.48e-40FFCP PHASE2:Hg19::chr6:5491081..5491106,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491081..5491106, +
1.48e-40FFCP PHASE2:Hg19::chr13:28541442..28541451,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:28541442..28541451, -
1.48e-40FFCP PHASE1:Hg19::chr6:104674708..104674749,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:104674708..104674749, -
1.48e-40FFCP PHASE2:Hg19::chrX:138909080..138909093,-#_75bb4d3d88c960d8349cd366f05fbccdp@chrX:138909080..138909093, -
1.48e-40FFCP PHASE2:Hg19::chr2:205036975..205037009,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:205036975..205037009, -
1.48e-40FFCP PHASE1:Hg19::chr8:128260156..128260173,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128260156..128260173, +
1.48e-40FFCP PHASE1:Hg19::chr15:60749901..60749904,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:60749901..60749904, -
1.48e-40FFCP PHASE1:Hg19::chr13:54830821..54830841,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:54830821..54830841, +
1.48e-40FFCP PHASE2:Hg19::chr3:140054665..140054678,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054665..140054678, -
1.48e-40FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:65466889..65466894, -
1.48e-40FFCP PHASE1:Hg19::chr8:127681013..127681042,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127681013..127681042, -
1.48e-40FFCP PHASE2:Hg19::chr8:127681013..127681042,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127681013..127681042, -
1.48e-40FFCP PHASE1:Hg19::chr9:125898916..125898941,-#_75bb4d3d88c960d8349cd366f05fbccdp14@STRBP
1.48e-40FFCP PHASE1:Hg19::chr3:148164659..148164667,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148164659..148164667, -
1.48e-40FFCP PHASE1:Hg19::chr8:107667666..107667673,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:107667666..107667673, +
1.48e-40FFCP PHASE2:Hg19::chr16:55344418..55344442,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:55344418..55344442, +
1.48e-40FFCP PHASE2:Hg19::chr14:26793415..26793426,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:26793415..26793426, -
1.48e-40FFCP PHASE2:Hg19::chr13:46093198..46093203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:46093198..46093203, +
1.48e-40FFCP PHASE2:Hg19::chr1:93128346..93128356,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:93128346..93128356, -
1.48e-40FFCP PHASE2:Hg19::chr12:31632584..31632589,-#_75bb4d3d88c960d8349cd366f05fbccdp20@DENND5B
1.48e-40FFCP PHASE2:Hg19::chr3:24797750..24797759,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:24797750..24797759, -
1.48e-40FFCP PHASE2:Hg19::chr6:91774965..91774974,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:91774965..91774974, +
1.48e-40FFCP PHASE1:Hg19::chr8:127440115..127440120,+#_75bb4d3d88c960d8349cd366f05fbccd+, p@chr8:127440115..127440120
1.48e-40FFCP PHASE2:Hg19::chr8:127440115..127440120,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:127440115..127440120, +
1.48e-40FFCP PHASE1:Hg19::chr2:159306961..159306975,+#_75bb4d3d88c960d8349cd366f05fbccd+, p@chr2:159306961..159306975
1.48e-40FFCP PHASE2:Hg19::chr6:31683061..31683070,+#_75bb4d3d88c960d8349cd366f05fbccdp5@LY6G6D
1.48e-40FFCP PHASE2:Hg19::chr8:128418747..128418756,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128418747..128418756, -
1.48e-40FFCP PHASE2:Hg19::chr14:22850283..22850310,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr14:22850283..22850310, -
1.48e-40FFCP PHASE1:Hg19::chr4:157174108..157174136,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174108..157174136, +
1.48e-40FFCP PHASE2:Hg19::chr1:118658073..118658082,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:118658073..118658082, -
1.48e-40FFCP PHASE1:Hg19::chr3:185823573..185823578,-#_75bb4d3d88c960d8349cd366f05fbccdp26@ETV5
1.48e-40FFCP PHASE2:Hg19::chr8:107667666..107667673,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:107667666..107667673, +
1.48e-40FFCP PHASE2:Hg19::chr3:148164659..148164667,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:148164659..148164667, -
1.48e-40FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr12:77730114..77730120, -
1.48e-40FFCP PHASE2:Hg19::chr7:30499737..30499761,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:30499737..30499761, +
1.48e-40FFCP PHASE1:Hg19::chr8:128418747..128418756,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128418747..128418756, -
1.48e-40FFCP PHASE1:Hg19::chr7:141499716..141499722,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:141499716..141499722, +
1.48e-40FFCP PHASE1:Hg19::chr6:8446968..8446983,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8446968..8446983, +
1.48e-40FFCP PHASE2:Hg19::chr1:19522690..19522704,-#_75bb4d3d88c960d8349cd366f05fbccd-, p@chr1:19522690..19522704
1.48e-40FFCP PHASE1:Hg19::chr1:93128331..93128338,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:93128331..93128338, -
1.48e-40FFCP PHASE1:Hg19::chr16:53671764..53671771,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr16:53671764..53671771, -
1.48e-40FFCP PHASE2:Hg19::chr1:55404829..55404833,-#_75bb4d3d88c960d8349cd366f05fbccd-, p@chr1:55404829..55404833
1.48e-40FFCP PHASE1:Hg19::chr15:45950558..45950561,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr15:45950558..45950561, +
1.48e-40FFCP PHASE2:Hg19::chr7:138064518..138064531,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:138064518..138064531, -
1.48e-40FFCP PHASE1:Hg19::chr6:5491081..5491106,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:5491081..5491106, +
1.48e-40FFCP PHASE2:Hg19::chr6:372660..372670,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:372660..372670, -
1.48e-40FFCP PHASE1:Hg19::chr13:46093198..46093203,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:46093198..46093203, +
1.48e-40FFCP PHASE2:Hg19::chr4:157174324..157174332,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:157174324..157174332, +
1.48e-40FFCP PHASE1:Hg19::chr5:57619538..57619575,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:57619538..57619575, -
1.48e-40FFCP PHASE2:Hg19::chr3:139373728..139373733,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:139373728..139373733, +
1.48e-40FFCP PHASE2:Hg19::chr13:48703799..48703838,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:48703799..48703838, -
1.48e-40FFCP PHASE1:Hg19::chr7:87232406..87232409,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:87232406..87232409, -
1.48e-40FFCP PHASE1:Hg19::chr18:53252911..53252918,-#_75bb4d3d88c960d8349cd366f05fbccdp106@TCF4
1.48e-40FFCP PHASE1:Hg19::chr13:110258158..110258170,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr13:110258158..110258170, -
1.48e-40FFCP PHASE1:Hg19::chr2:163302780..163302789,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr2:163302780..163302789, -
1.48e-40FFCP PHASE1:Hg19::chr3:140054724..140054735,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054724..140054735, -
1.48e-40FFCP PHASE2:Hg19::chr8:128691603..128691614,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128691603..128691614, -
1.48e-40FFCP PHASE1:Hg19::chr8:55331615..55331618,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:55331615..55331618, +
1.48e-40FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr4:169559850..169559856, -
1.48e-40FFCP PHASE2:Hg19::chr6:8389389..8389429,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr6:8389389..8389429, -
1.48e-40FFCP PHASE1:Hg19::chr12:31632597..31632607,-#_75bb4d3d88c960d8349cd366f05fbccdp13@DENND5B
1.48e-40FFCP PHASE1:Hg19::chr8:128691603..128691614,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:128691603..128691614, -
1.48e-40FFCP PHASE2:Hg19::chr8:55331615..55331618,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr8:55331615..55331618, +
1.48e-40FFCP PHASE2:Hg19::chr5:97747048..97747059,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:97747048..97747059, +
1.48e-40FFCP PHASE2:Hg19::chr7:141499716..141499722,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:141499716..141499722, +
1.48e-40FFCP PHASE2:Hg19::chr7:97958802..97958804,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr7:97958802..97958804, -
1.48e-40FFCP PHASE1:Hg19::chr5:71987749..71987774,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr5:71987749..71987774, -
1.48e-40FFCP PHASE2:Hg19::chr3:140054724..140054735,-#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:140054724..140054735, -
1.48e-40FFCP PHASE1:Hg19::chr1:78621016..78621042,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr1:78621016..78621042, +
1.48e-40FFCP PHASE1:Hg19::chr7:89797154..89797172,+#_75bb4d3d88c960d8349cd366f05fbccdp9@STEAP2
1.48e-40FFCP PHASE1:Hg19::chr3:139373728..139373733,+#_75bb4d3d88c960d8349cd366f05fbccdp@chr3:139373728..139373733, +

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