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UBERON:0005294

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Name:genital ridge
Namespace:FANTOM
Definition:"The precursor to the gonads." [Wikipedia:Gonadal_ridge]
Xrefs:
links:

AAO:0011047
EHDAA2:0004044
[ Gray1106.png Gray1106.png]
[ 200px-Gray1106.png 200px-Gray1106.png]
ncithesaurus:Gonadal_Ridge
SCTID:361399001

XAO:0000018
Synonyms: "crista gonadalis" RELATED LATIN [Wikipedia:Gonadal_ridge]
"gonadal ridge" EXACT [Wikipedia:Gonadal_ridge]
Comments:TODO - check developmental relationships. merge with urogenital ridge?

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0004876(urogenital ridge)
part_of:UBERON:0000922(embryo),UBERON:0004122(genitourinary system)



Children

develops from:UBERON:0005295 (sex cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005294 (genital ridge), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr11:27721743..27721753,-#_e3de7ac9257e5b9a7af5412b6aa614fep26@BDNF
5.42e-195FFCP PHASE2:Hg19::chr11:27721743..27721753,-#_e3de7ac9257e5b9a7af5412b6aa614fep26@BDNF
9.37e-99FFCP PHASE2:Hg19::chr1:227505905..227505906,-#_e2ab82c1a3a13a148fcf2ce95774640fp43@CDC42BPA
9.37e-99FFCP PHASE1:Hg19::chr3:158450428..158450431,-#_e2ab82c1a3a13a148fcf2ce95774640fp9@RARRES1
9.37e-99FFCP PHASE2:Hg19::chr3:158450428..158450431,-#_e2ab82c1a3a13a148fcf2ce95774640fp9@RARRES1
9.37e-99FFCP PHASE1:Hg19::chr1:227505905..227505906,-#_e2ab82c1a3a13a148fcf2ce95774640fp43@CDC42BPA
2.55e-98FFCP PHASE2:Hg19::chr2:9519086..9519101,+#_1cfae7ea13896c2eb65fa650082f2973p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_1cfae7ea13896c2eb65fa650082f2973p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE1:Hg19::chr8:69832864..69832865,+#_1cfae7ea13896c2eb65fa650082f2973+, p@chr8:69832864..69832865
2.55e-98FFCP PHASE2:Hg19::chr7:89874193..89874199,+#_1cfae7ea13896c2eb65fa650082f2973p7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr7:18206831..18206833,+#_1cfae7ea13896c2eb65fa650082f2973p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE1:Hg19::chr3:193356854..193356864,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:193356854..193356864, +
2.55e-98FFCP PHASE1:Hg19::chr3:170430340..170430344,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE2:Hg19::chr8:69832864..69832865,+#_1cfae7ea13896c2eb65fa650082f2973p@chr8:69832864..69832865, +
2.55e-98FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_1cfae7ea13896c2eb65fa650082f2973p@chr19:54600897..54600899, +
2.55e-98FFCP PHASE2:Hg19::chr3:170430340..170430344,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:170430340..170430344, +
2.55e-98FFCP PHASE1:Hg19::chr2:9519086..9519101,+#_1cfae7ea13896c2eb65fa650082f2973p@chr2:9519086..9519101, +
2.55e-98FFCP PHASE1:Hg19::chr13:53030077..53030083,-#_1cfae7ea13896c2eb65fa650082f2973p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE1:Hg19::chr8:47529304..47529311,-#_1cfae7ea13896c2eb65fa650082f2973p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE1:Hg19::chr19:40320572..40320586,-#_1cfae7ea13896c2eb65fa650082f2973p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr7:89874193..89874199,+#_1cfae7ea13896c2eb65fa650082f2973p7@C7orf63
2.55e-98FFCP PHASE2:Hg19::chr8:47529304..47529311,-#_1cfae7ea13896c2eb65fa650082f2973p@chr8:47529304..47529311, -
2.55e-98FFCP PHASE2:Hg19::chr19:40320572..40320586,-#_1cfae7ea13896c2eb65fa650082f2973p@chr19:40320572..40320586, -
2.55e-98FFCP PHASE1:Hg19::chr7:18206831..18206833,+#_1cfae7ea13896c2eb65fa650082f2973p@chr7:18206831..18206833, +
2.55e-98FFCP PHASE2:Hg19::chr13:53030077..53030083,-#_1cfae7ea13896c2eb65fa650082f2973p@chr13:53030077..53030083, -
2.55e-98FFCP PHASE2:Hg19::chr3:193356854..193356864,+#_1cfae7ea13896c2eb65fa650082f2973p@chr3:193356854..193356864, +
1.23e-66FFCP PHASE2:Hg19::chr2:19551668..19551679,-#_f7a1185835113c6b72152809226bc1a3p@chr2:19551668..19551679, -
1.23e-66FFCP PHASE1:Hg19::chr2:19551668..19551679,-#_f7a1185835113c6b72152809226bc1a3p@chr2:19551668..19551679, -
2.39e-66FFCP PHASE2:Hg19::chr7:98445585..98445594,-#_a05f1271da746a7d9d393baa2cc850e6p22@TMEM130
2.39e-66FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_a05f1271da746a7d9d393baa2cc850e6p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_a05f1271da746a7d9d393baa2cc850e6p@chr3:112931461..112931474, -
2.39e-66FFCP PHASE1:Hg19::chr12:15815732..15815744,-#_a05f1271da746a7d9d393baa2cc850e6p21@EPS8
2.39e-66FFCP PHASE1:Hg19::chr7:98445585..98445594,-#_a05f1271da746a7d9d393baa2cc850e6p22@TMEM130
2.39e-66FFCP PHASE2:Hg19::chr12:15815732..15815744,-#_a05f1271da746a7d9d393baa2cc850e6p21@EPS8
2.39e-66FFCP PHASE2:Hg19::chr2:72803155..72803204,-#_a05f1271da746a7d9d393baa2cc850e6p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE2:Hg19::chr1:197889533..197889548,+#_a05f1271da746a7d9d393baa2cc850e6p@chr1:197889533..197889548, +
2.39e-66FFCP PHASE1:Hg19::chr2:72803155..72803204,-#_a05f1271da746a7d9d393baa2cc850e6p@chr2:72803155..72803204, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889533..197889548,+#_a05f1271da746a7d9d393baa2cc850e6p@chr1:197889533..197889548, +
4.66e-66FFCP PHASE2:Hg19::chr5:90830481..90830492,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE1:Hg19::chr3:170916991..170916995,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr10:1034666..1034675,+#_bcfc4f5a40216061ce40ecf557e8c735p4@GTPBP4
4.66e-66FFCP PHASE1:Hg19::chr21:48080873..48080878,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE2:Hg19::chr21:48080873..48080878,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr21:48080873..48080878, +
4.66e-66FFCP PHASE1:Hg19::chr3:99984127..99984138,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE2:Hg19::chr3:170916991..170916995,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:170916991..170916995, -
4.66e-66FFCP PHASE2:Hg19::chr10:1034666..1034675,+#_bcfc4f5a40216061ce40ecf557e8c735p4@GTPBP4
4.66e-66FFCP PHASE1:Hg19::chr5:90830481..90830492,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:90830481..90830492, +
4.66e-66FFCP PHASE2:Hg19::chr3:99984127..99984138,+#_bcfc4f5a40216061ce40ecf557e8c735p@chr3:99984127..99984138, +
4.66e-66FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_bcfc4f5a40216061ce40ecf557e8c735p38@PTK2
4.66e-66FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_bcfc4f5a40216061ce40ecf557e8c735p38@PTK2
4.66e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_bcfc4f5a40216061ce40ecf557e8c735p@chr5:75912402..75912418, -
6.41e-58FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_ecd7453deb6d8a2cb02d793c519c9c00p4@Spink12
6.41e-58FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_ecd7453deb6d8a2cb02d793c519c9c00p4@Spink12
1.46e-50FFCP PHASE1:Hg19::chr11:114173606..114173612,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE2:Hg19::chr2:177009137..177009140,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE2:Hg19::chr11:114173606..114173612,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr11:114173606..114173612, +
1.46e-50FFCP PHASE1:Hg19::chr2:177009137..177009140,+#_b41385a4757dc3422a5f5b5b58f4044dp@chr2:177009137..177009140, +
1.46e-50FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_b41385a4757dc3422a5f5b5b58f4044dp8@TCF21
1.46e-50FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_b41385a4757dc3422a5f5b5b58f4044dp8@TCF21
2.42e-50FFCP PHASE1:Hg19::chr19:54024454..54024463,+#_3d6176df4a58efdff931fc17a1fff9d7p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr21:17214724..17214740,+#_3d6176df4a58efdff931fc17a1fff9d7p11@USP25
2.42e-50FFCP PHASE2:Hg19::chr19:54024454..54024463,+#_3d6176df4a58efdff931fc17a1fff9d7p31@ZNF331
2.42e-50FFCP PHASE2:Hg19::chr5:144875561..144875565,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr3:46477553..46477563,-#_3d6176df4a58efdff931fc17a1fff9d7p@chr3:46477553..46477563, -
2.42e-50FFCP PHASE1:Hg19::chr5:144875561..144875565,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr5:144875561..144875565, +
2.42e-50FFCP PHASE2:Hg19::chr15:39288691..39288698,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr7:137564648..137564658,-#_3d6176df4a58efdff931fc17a1fff9d7p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr7:137564648..137564658,-#_3d6176df4a58efdff931fc17a1fff9d7p32@CREB3L2
2.42e-50FFCP PHASE2:Hg19::chr2:55459485..55459491,-#_3d6176df4a58efdff931fc17a1fff9d7p6@C2orf63
2.42e-50FFCP PHASE1:Hg19::chr3:46477553..46477563,-#_3d6176df4a58efdff931fc17a1fff9d7-, p@chr3:46477553..46477563
2.42e-50FFCP PHASE1:Hg19::chr15:39288691..39288698,+#_3d6176df4a58efdff931fc17a1fff9d7p@chr15:39288691..39288698, +
2.42e-50FFCP PHASE1:Hg19::chr2:55459485..55459491,-#_3d6176df4a58efdff931fc17a1fff9d7p6@C2orf63
2.42e-50FFCP PHASE1:Hg19::chr21:17214724..17214740,+#_3d6176df4a58efdff931fc17a1fff9d7p11@USP25
3.99e-50FFCP PHASE1:Hg19::chr14:64804787..64804796,-#_c00478e6fd4fef513503299765b59e20p10@ESR2
3.99e-50FFCP PHASE1:Hg19::chr15:39420650..39420666,+#_c00478e6fd4fef513503299765b59e20p@chr15:39420650..39420666, +
3.99e-50FFCP PHASE1:Hg19::chr4:103969123..103969127,-#_c00478e6fd4fef513503299765b59e20p@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr12:5198350..5198359,+#_c00478e6fd4fef513503299765b59e20p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr4:103969123..103969127,-#_c00478e6fd4fef513503299765b59e20p@chr4:103969123..103969127, -
3.99e-50FFCP PHASE1:Hg19::chr11:829412..829430,+#_c00478e6fd4fef513503299765b59e20p11@EFCAB4A
3.99e-50FFCP PHASE2:Hg19::chr12:5198350..5198359,+#_c00478e6fd4fef513503299765b59e20p@chr12:5198350..5198359, +
3.99e-50FFCP PHASE2:Hg19::chr11:829412..829430,+#_c00478e6fd4fef513503299765b59e20p11@EFCAB4A
3.99e-50FFCP PHASE2:Hg19::chr14:64804787..64804796,-#_c00478e6fd4fef513503299765b59e20p10@ESR2
3.99e-50FFCP PHASE2:Hg19::chr15:39420650..39420666,+#_c00478e6fd4fef513503299765b59e20p@chr15:39420650..39420666, +
6.58e-50FFCP PHASE1:Hg19::chr16:1203194..1203207,+#_4676faa7563fca5706d723db96e6c9c5p3@CACNA1H
6.58e-50FFCP PHASE2:Hg19::chr17:58165788..58165794,-#_4676faa7563fca5706d723db96e6c9c5p1@LOC645638
6.58e-50FFCP PHASE2:Hg19::chr7:92462738..92462749,-#_4676faa7563fca5706d723db96e6c9c5p51@CDK6
6.58e-50FFCP PHASE2:Hg19::chr16:1203194..1203207,+#_4676faa7563fca5706d723db96e6c9c5p3@CACNA1H
6.58e-50FFCP PHASE1:Hg19::chr7:92462738..92462749,-#_4676faa7563fca5706d723db96e6c9c5p51@CDK6
6.58e-50FFCP PHASE1:Hg19::chr14:50697797..50697820,-#_4676faa7563fca5706d723db96e6c9c5p13@SOS2
6.58e-50FFCP PHASE2:Hg19::chr14:50697797..50697820,-#_4676faa7563fca5706d723db96e6c9c5p13@SOS2
6.58e-50FFCP PHASE1:Hg19::chr17:58165788..58165794,-#_4676faa7563fca5706d723db96e6c9c5p1@LOC645638
4.52e-44FFCP PHASE2:Mm9::chr17:75581992..75582009,+#_dbe197d9361fa6006d2e32c9a6cb2866p@chr17:75581992..75582009, +
4.52e-44FFCP PHASE1:Mm9::chr17:75581992..75582009,+#_dbe197d9361fa6006d2e32c9a6cb2866p@chr17:75581992..75582009, +
6.62e-41FFCP PHASE1:Hg19::chr3:194214959..194214968,-#_776de302e560332560dcaab6d936f5e8p@chr3:194214959..194214968, -
6.62e-41FFCP PHASE2:Hg19::chr3:194214959..194214968,-#_776de302e560332560dcaab6d936f5e8p@chr3:194214959..194214968, -
9.91e-41FFCP PHASE2:Hg19::chr11:77282391..77282402,+#_55f45cfd3562b88b8ee98bd9ce0d804ep@chr11:77282391..77282402, +
9.91e-41FFCP PHASE1:Hg19::chr2:102604493..102604499,+#_55f45cfd3562b88b8ee98bd9ce0d804ep@chr2:102604493..102604499, +
9.91e-41FFCP PHASE2:Hg19::chr11:94822746..94822757,+#_55f45cfd3562b88b8ee98bd9ce0d804ep8@ENDOD1
9.91e-41FFCP PHASE1:Hg19::chr3:49139102..49139119,-#_55f45cfd3562b88b8ee98bd9ce0d804ep@chr3:49139102..49139119, -

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