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UBERON:0007213

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Name:mesenchyme derived from head neural crest
Namespace:FANTOM
Xrefs:
links:

EFO:0003572
EHDAA2:0000735
EMAPA:16100
EMAPA:16169
EMAPA:16271
EMAPA_RETIRED:16271
TAO:0000787

ZFA:0000787
Synonyms: "head mesenchyme from cranial neural crest" EXACT []
"head mesenchyme from neural crest" EXACT [EHDAA2:0000735]
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0005253(head mesenchyme),UBERON:0014387(mesenchyme derived from neural crest)
develops_from:UBERON:0003099(cranial neural crest)



Children

is a:UBERON:0003314 (eye mesenchyme),UBERON:0005565 (facio-acoustic neural crest),UBERON:0009501 (mesenchyme of fronto-nasal process),UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest)
develops from:UBERON:0001777 (substantia propria of cornea),UBERON:0009204 (medial nasal process mesenchyme),UBERON:0009501 (mesenchyme of fronto-nasal process)
part of:UBERON:0009920 (optic neural crest),UBERON:0010258 (mesenchyme from rhombencephalic neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007213 (mesenchyme derived from head neural crest), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_7f1885a203ac023ca1c02d84054c5654p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_7f1885a203ac023ca1c02d84054c5654p14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_cef9998ad046e278d87fa22dd7bc1c31p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_cef9998ad046e278d87fa22dd7bc1c31p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_cef9998ad046e278d87fa22dd7bc1c31p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_cef9998ad046e278d87fa22dd7bc1c31p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_cef9998ad046e278d87fa22dd7bc1c31p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_cef9998ad046e278d87fa22dd7bc1c31p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_cef9998ad046e278d87fa22dd7bc1c31p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_cef9998ad046e278d87fa22dd7bc1c31p13@C17orf67
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_c91370692f2c86dbbfce11bf607eb7e7p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_c91370692f2c86dbbfce11bf607eb7e7p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_c91370692f2c86dbbfce11bf607eb7e7p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_c91370692f2c86dbbfce11bf607eb7e7p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_fec87e16f418d96a3c7e3b531a4f9257p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_fec87e16f418d96a3c7e3b531a4f9257p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_a48374c98ce126e40d2231070c68ebffp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_a48374c98ce126e40d2231070c68ebffp9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_a48374c98ce126e40d2231070c68ebffp9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_a48374c98ce126e40d2231070c68ebffp17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_a48374c98ce126e40d2231070c68ebff+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_a48374c98ce126e40d2231070c68ebffp17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_f8307549aae9e68846bb672a575d712bp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_f8307549aae9e68846bb672a575d712bp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_321a967aa48b3572490a0bb0d533c399p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_321a967aa48b3572490a0bb0d533c399p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_321a967aa48b3572490a0bb0d533c399p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_321a967aa48b3572490a0bb0d533c399p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_321a967aa48b3572490a0bb0d533c399p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_321a967aa48b3572490a0bb0d533c399p7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_e4b3596ab7c007acd50958879d19d870p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_e4b3596ab7c007acd50958879d19d870p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_e4b3596ab7c007acd50958879d19d870p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_e4b3596ab7c007acd50958879d19d870p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_56d93f71b2390ef0cd1ccf5b74897c7d-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_56d93f71b2390ef0cd1ccf5b74897c7dp@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_4c5efdbbb8b4655b0b56b62a4e203c99p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_4c5efdbbb8b4655b0b56b62a4e203c99p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_4c5efdbbb8b4655b0b56b62a4e203c99p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_4c5efdbbb8b4655b0b56b62a4e203c99p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_4c5efdbbb8b4655b0b56b62a4e203c99p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_4c5efdbbb8b4655b0b56b62a4e203c99p12@FAM65C
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_af693417442f36506c6f03e9b8fed506p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_af693417442f36506c6f03e9b8fed506p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_af693417442f36506c6f03e9b8fed506p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_af693417442f36506c6f03e9b8fed506p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_318ce16d1dcf9ce30b9025af35f7d8d8p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_6d857da425cf3dc5f05572f0fd957fdap5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_6d857da425cf3dc5f05572f0fd957fdap5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_6d857da425cf3dc5f05572f0fd957fdap4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_6d857da425cf3dc5f05572f0fd957fdap@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_6d857da425cf3dc5f05572f0fd957fdap4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_6d857da425cf3dc5f05572f0fd957fdap@chr10:15760985..15760992, -
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_8709108a597746c86e71907e017ba827p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_8709108a597746c86e71907e017ba827p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_9f5f35d97898c793805142ba917538f2p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_9f5f35d97898c793805142ba917538f2p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_d8aafbb887fc15582e1b605c409146dd-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_d8aafbb887fc15582e1b605c409146ddp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_d8aafbb887fc15582e1b605c409146ddp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_d8aafbb887fc15582e1b605c409146ddp@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_9ffd4c9712bac81df291c5721e55f2d0p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_9ffd4c9712bac81df291c5721e55f2d0p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_9ffd4c9712bac81df291c5721e55f2d0-, p@chr5:19721484..19721507
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_9ffd4c9712bac81df291c5721e55f2d0p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_9ffd4c9712bac81df291c5721e55f2d0p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_9ffd4c9712bac81df291c5721e55f2d0p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_b0f12a1298b3c3c0ee2b29289ff3326a+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_b0f12a1298b3c3c0ee2b29289ff3326a-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_b0f12a1298b3c3c0ee2b29289ff3326ap@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_5b6772f2e1bc972be802d22e2f791be2p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_5b6772f2e1bc972be802d22e2f791be2p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_5b6772f2e1bc972be802d22e2f791be2p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_5b6772f2e1bc972be802d22e2f791be2p7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_cc29cba33d71c39e87a99080b9a8eccfp@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_cc29cba33d71c39e87a99080b9a8eccfp@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_cc29cba33d71c39e87a99080b9a8eccfp@chrX:132670143..132670152, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_22456672f6200d3f57ad0503573d685ap@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_22456672f6200d3f57ad0503573d685ap@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_9e5ff387fdd6dc8d1ef9751c64b2a9a7p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_9a13021ef09c6e35e4b95211fda2ca60p@chr13:36046127..36046134, +
4.2e-29FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_9a13021ef09c6e35e4b95211fda2ca60+, p@chr1:75602768..75602785

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