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UBERON:0007245

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Name:nuclear complex of neuraxis
Namespace:FANTOM
Definition:"Internal gray matter component which consists of an assemblage of nuclei of neuraxis. Example: cerebellar nuclear complex, Vestibular nuclear complex.[FMA]" [FMA:84059, FMA:FMA]
Xrefs:
links:
FMA:84059
Comments:todo - move existing complex classes currently under nucleus to be under this class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002020(gray matter)



Children

is a:UBERON:0002420 (basal ganglion)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007245 (nuclear complex of neuraxis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.82e-133FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_c9c920738104c9613de316324799f960p22@GNAL
1.82e-133FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_c9c920738104c9613de316324799f960p22@GNAL
1.42e-130FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_1cb7be99f5dac7f5f6b33f47f4ab2740p@chr15:40582949..40582989, +
1.42e-130FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_1cb7be99f5dac7f5f6b33f47f4ab2740p@chr15:40582949..40582989, +
1.21e-118FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_2dfab0255fa3127d99026f9f93c1fc79p28@ARPP21
1.21e-118FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_2dfab0255fa3127d99026f9f93c1fc79p28@ARPP21
3.02e-112FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_e715a9b58f6a5ce6085b4ecf1165724ep@chr13:98995904..98995913, +
3.02e-112FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_e715a9b58f6a5ce6085b4ecf1165724ep@chr13:98995904..98995913, +
3.66e-112FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_edd070f923962b546b9c7a49c3fd3a3dp@chr11:80886203..80886231, +
3.66e-112FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_edd070f923962b546b9c7a49c3fd3a3dp@chr11:80886203..80886231, +
6.51e-112FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_1deee4bac5f07be1f5771f3efc862598p@chr2:7112752..7112770, +
6.51e-112FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_1deee4bac5f07be1f5771f3efc862598p@chr2:7112752..7112770, +
7.88e-112FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_43b115f9424f37d0c15d523c687a770cp3@ENST00000413244
7.88e-112FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_43b115f9424f37d0c15d523c687a770cp3@ENST00000413244
4.6e-109FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr15:35546024..35546035, -
4.6e-109FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr15:35546024..35546035, -
4.6e-109FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr17:19390211..19390223, +
4.6e-109FFCP PHASE2:Hg19::chr19:719510..719520,+#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr19:719510..719520, +
4.6e-109FFCP PHASE1:Hg19::chr19:719510..719520,+#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr19:719510..719520, +
4.6e-109FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_d67600ef3cbb1cf327a65d5c6c9703e3p@chr17:19390211..19390223, +
4.01e-107FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_a091a40a6b5fbb12e537bb36716e340dp17@GNAL
4.01e-107FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_a091a40a6b5fbb12e537bb36716e340dp17@GNAL
1.41e-106FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_8a828bd54c15c819326ecb1359641c9ep@chr21:43917191..43917207, -
1.41e-106FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_8a828bd54c15c819326ecb1359641c9ep@chr21:43917191..43917207, -
3.33e-98FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_cfe7da746f11c3932fb968d14fa69e44p10@PTPN5
3.33e-98FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_cfe7da746f11c3932fb968d14fa69e44p10@PTPN5
1.43e-97FFCP PHASE2:Hg19::chr13:98995923..98995941,+#_66acfd33bf999d0dbd160a469ce76273p@chr13:98995923..98995941, +
1.43e-97FFCP PHASE1:Hg19::chr13:98995923..98995941,+#_66acfd33bf999d0dbd160a469ce76273p@chr13:98995923..98995941, +
4.08e-91FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_4cd65b9c8872391e3e2af2e7e90a3ca9p@chr11:26497871..26497889, +
4.08e-91FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_4cd65b9c8872391e3e2af2e7e90a3ca9p@chr11:26497871..26497889, +
4.08e-91FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_4cd65b9c8872391e3e2af2e7e90a3ca9p@chr10:97261901..97261919, -
4.08e-91FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_4cd65b9c8872391e3e2af2e7e90a3ca9p@chr10:97261901..97261919, -
4.91e-91FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_fce11f2d95cd26fa56bcbf2bcdea5181p1@ENST00000421878
4.91e-91FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_fce11f2d95cd26fa56bcbf2bcdea5181p14@ADORA2A
4.91e-91FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_fce11f2d95cd26fa56bcbf2bcdea5181p1@ENST00000421878
4.91e-91FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_fce11f2d95cd26fa56bcbf2bcdea5181p@chr19:1236637..1236645, -
4.91e-91FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_fce11f2d95cd26fa56bcbf2bcdea5181p8@ANO3
4.91e-91FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_fce11f2d95cd26fa56bcbf2bcdea5181p14@ADORA2A
4.91e-91FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_fce11f2d95cd26fa56bcbf2bcdea5181p@chr19:1236637..1236645, -
4.91e-91FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_fce11f2d95cd26fa56bcbf2bcdea5181p8@ANO3
1.7e-89FFCP PHASE1:Hg19::chr11:18765553..18765567,-#_bd104f402bffa283bef3d35477432fa8p7@PTPN5
1.7e-89FFCP PHASE2:Hg19::chr1:174417095..174417131,+#_bd104f402bffa283bef3d35477432fa8p1@GPR52
1.7e-89FFCP PHASE1:Hg19::chr1:174417095..174417131,+#_bd104f402bffa283bef3d35477432fa8p1@GPR52
1.7e-89FFCP PHASE2:Hg19::chr11:18765553..18765567,-#_bd104f402bffa283bef3d35477432fa8p7@PTPN5
2.51e-89FFCP PHASE1:Hg19::chr1:101003675..101003682,+#_ad00f27301997145439589a9276084e6p5@GPR88
2.51e-89FFCP PHASE2:Hg19::chr1:101003675..101003682,+#_ad00f27301997145439589a9276084e6p5@GPR88
2.86e-89FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_1195d105bcd57588a6d06ac8a6027ecdp14@PPP1CA
2.86e-89FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_1195d105bcd57588a6d06ac8a6027ecdp14@PPP1CA
4.81e-88FFCP PHASE2:Hg19::chr11:18765881..18765897,-#_d4b956afa2b305e294a90cc6e28d525fp3@PTPN5
4.81e-88FFCP PHASE1:Hg19::chr11:18765881..18765897,-#_d4b956afa2b305e294a90cc6e28d525fp3@PTPN5
1.33e-87FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_6809b09fac5d44a76235b40100946867p@chr17:19390234..19390251, +
1.33e-87FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_6809b09fac5d44a76235b40100946867p@chr17:19390234..19390251, +
1.37e-87FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_878ea35dd850fb4cd6d092c749517be6p@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_878ea35dd850fb4cd6d092c749517be6p@chr14:78638610..78638621, +
1.37e-87FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_878ea35dd850fb4cd6d092c749517be6p@chr15:35546154..35546174, -
1.37e-87FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_878ea35dd850fb4cd6d092c749517be6p1@GNRH1
1.37e-87FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_878ea35dd850fb4cd6d092c749517be6p@chr7:22382758..22382765, -
1.37e-87FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_878ea35dd850fb4cd6d092c749517be6p@chr2:152828264..152828299, -
1.37e-87FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_878ea35dd850fb4cd6d092c749517be6p20@WIPF3
1.37e-87FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_878ea35dd850fb4cd6d092c749517be6p@chr18:47967428..47967437, -
1.37e-87FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_878ea35dd850fb4cd6d092c749517be6p@chr18:47967428..47967437, -
1.37e-87FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_878ea35dd850fb4cd6d092c749517be6p@chr1:31352916..31352926, -
1.37e-87FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_878ea35dd850fb4cd6d092c749517be6p1@GNRH1
1.37e-87FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_878ea35dd850fb4cd6d092c749517be6p@chr7:22382758..22382765, -
1.37e-87FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_878ea35dd850fb4cd6d092c749517be6p@chr12:6031299..6031315, -
1.37e-87FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_878ea35dd850fb4cd6d092c749517be6p@chr8:19799565..19799589, -
1.37e-87FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_878ea35dd850fb4cd6d092c749517be6p@chr8:19799565..19799589, -
1.37e-87FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_878ea35dd850fb4cd6d092c749517be6p@chr15:35546154..35546174, -
1.37e-87FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_878ea35dd850fb4cd6d092c749517be6p@chr1:31352916..31352926, -
1.37e-87FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_878ea35dd850fb4cd6d092c749517be6p@chr14:78638610..78638621, +
1.37e-87FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_878ea35dd850fb4cd6d092c749517be6p@chr2:152828264..152828299, -
1.37e-87FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_878ea35dd850fb4cd6d092c749517be6p@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_878ea35dd850fb4cd6d092c749517be6p@chr12:6031299..6031315, -
1.37e-87FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_878ea35dd850fb4cd6d092c749517be6p20@WIPF3
1.79e-87FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_1c38bcdee76174d8004c0ff3b71cd440p5@ANO3
1.79e-87FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_1c38bcdee76174d8004c0ff3b71cd440p@chr10:73313437..73313451, -
1.79e-87FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_1c38bcdee76174d8004c0ff3b71cd440p@chr10:73313437..73313451, -
1.79e-87FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_1c38bcdee76174d8004c0ff3b71cd440p5@ANO3
2.08e-87FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_7f194faa92dfe8b4bf2999faea1f2333p@chr3:16851273..16851310, +
2.08e-87FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_7f194faa92dfe8b4bf2999faea1f2333p@chr3:16851273..16851310, +
2.42e-87FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_bf776f511009264df0b9247a048d7bbdp@chr7:67899920..67899958, -
2.42e-87FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_bf776f511009264df0b9247a048d7bbdp@chr7:67899920..67899958, -
2.8e-87FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_d70281fedb2eb6eb7972079a52b84982p@chr9:95569585..95569596, +
2.8e-87FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_d70281fedb2eb6eb7972079a52b84982p@chr9:95569585..95569596, +
4.39e-83FFCP PHASE2:Hg19::chr18:11751493..11751507,+#_0b1bb910df561a4fe432058b7f9476b5p12@GNAL
4.39e-83FFCP PHASE1:Hg19::chr18:11751493..11751507,+#_0b1bb910df561a4fe432058b7f9476b5p12@GNAL
3.09e-79FFCP PHASE1:Hg19::chr11:13461601..13461620,-#_b788f3df14805524e21605be17468fbdp5@BTBD10
3.09e-79FFCP PHASE2:Hg19::chr11:13461601..13461620,-#_b788f3df14805524e21605be17468fbdp5@BTBD10
5.29e-79FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_58c35be378ac70a49b30711520934a9ep@chr6:166076645..166076657, -
5.29e-79FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_58c35be378ac70a49b30711520934a9ep@chr6:166076645..166076657, -
6.06e-79FFCP PHASE2:Hg19::chr2:26781521..26781537,-#_4a4c11c0badbb25b765e60b58920c516p2@OTOF
6.06e-79FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_4a4c11c0badbb25b765e60b58920c516p2@ENST00000413244
6.06e-79FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_4a4c11c0badbb25b765e60b58920c516p6@PTPN5
6.06e-79FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_4a4c11c0badbb25b765e60b58920c516p2@ENST00000413244
6.06e-79FFCP PHASE1:Hg19::chr2:26781521..26781537,-#_4a4c11c0badbb25b765e60b58920c516p2@OTOF
6.06e-79FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_4a4c11c0badbb25b765e60b58920c516p6@PTPN5
6.93e-79FFCP PHASE2:Hg19::chr19:19640188..19640201,+#_8f8ad4add7fd4b7c1b5b0fa88b7f7afcp@chr19:19640188..19640201, +
6.93e-79FFCP PHASE1:Hg19::chr19:19640188..19640201,+#_8f8ad4add7fd4b7c1b5b0fa88b7f7afcp@chr19:19640188..19640201, +