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Revision as of 08:25, 26 June 2012

Name:extraembryonic cell
Namespace:cell


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000548(animal cell),CL:0002371(somatic cell)



Children


is a:CL:0000351 (trophoblast cell),CL:0002536 (amniotic epithelial cell),CL:0002537 (amnion mesenchymal stem cell),CL:0002541 (chorionic membrane mesenchymal stem cell),CL:0002558 (fibroblast of villous mesenchyme),CL:0002569 (mesenchymal stem cell of umbilical cord),CL:0002577 (placental epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000349 (extraembryonic cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.74e-104FFCP PHASE2:Hg19::chr2:237683156..237683171,+#_05da9e064508172b80f903f6456a21f2p@chr2:237683156..237683171, +
9.74e-104FFCP PHASE1:Hg19::chr2:237683156..237683171,+#_05da9e064508172b80f903f6456a21f2p@chr2:237683156..237683171, +
7.02e-103FFCP PHASE1:Hg19::chr19:36592982..36592993,+#_9a3510ce94ff2d775f68b72186fe4687p@chr19:36592982..36592993, +
7.02e-103FFCP PHASE2:Hg19::chr19:36592982..36592993,+#_9a3510ce94ff2d775f68b72186fe4687p@chr19:36592982..36592993, +
6.43e-96FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_f5da4a13ccdb9b0bb734b99b480c80c3p1@ENST00000469806
6.43e-96FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_f5da4a13ccdb9b0bb734b99b480c80c3p1@ENST00000469806
1.62e-93FFCP PHASE1:Hg19::chr20:61287795..61287809,+#_773498266b65f4c0834ebf502a69034dp4@SLCO4A1
1.62e-93FFCP PHASE2:Hg19::chr20:61287795..61287809,+#_773498266b65f4c0834ebf502a69034dp4@SLCO4A1
6.35e-89FFCP PHASE1:Hg19::chr11:8857248..8857269,-#_88c8fdfce8ba731666709ad4cf3860e8p16@ST5
6.35e-89FFCP PHASE2:Hg19::chr11:8857248..8857269,-#_88c8fdfce8ba731666709ad4cf3860e8p16@ST5
6.91e-89FFCP PHASE1:Hg19::chr2:237682954..237682971,+#_55548b3aca4f60d1ab585b3d38504d1dp@chr2:237682954..237682971, +
6.91e-89FFCP PHASE2:Hg19::chr2:237682954..237682971,+#_55548b3aca4f60d1ab585b3d38504d1dp@chr2:237682954..237682971, +
8.17e-89FFCP PHASE2:Hg19::chr2:237682990..237683009,+#_6d941d0ff03bb41988301ce76481f57cp@chr2:237682990..237683009, +
8.17e-89FFCP PHASE1:Hg19::chr2:237682990..237683009,+#_6d941d0ff03bb41988301ce76481f57c+, p@chr2:237682990..237683009
9.66e-89FFCP PHASE1:Hg19::chr11:8857295..8857310,-#_eeae10e9b53df595c84aa41fdbfe0d60p21@ST5
9.66e-89FFCP PHASE2:Hg19::chr11:8857295..8857310,-#_eeae10e9b53df595c84aa41fdbfe0d60p21@ST5
1.58e-86FFCP PHASE1:Mm9::chr11:114739327..114739352,+#_8622738231903069f699a518c38ca6e2+, p@chr11:114739327..114739352
1.58e-86FFCP PHASE1:Mm9::chr8:44265871..44265878,+#_8622738231903069f699a518c38ca6e2p2@Triml2
1.58e-86FFCP PHASE2:Mm9::chr4:9880126..9880128,+#_8622738231903069f699a518c38ca6e2p@chr4:9880126..9880128, +
1.58e-86FFCP PHASE2:Mm9::chrX:22692718..22692721,+#_8622738231903069f699a518c38ca6e2p@chrX:22692718..22692721, +
1.58e-86FFCP PHASE2:Mm9::chr8:44265871..44265878,+#_8622738231903069f699a518c38ca6e2p2@Triml2
1.58e-86FFCP PHASE1:Mm9::chr14:55557307..55557316,+#_8622738231903069f699a518c38ca6e2p11@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr17:6988793..6988807,-#_8622738231903069f699a518c38ca6e2p@chr17:6988793..6988807, -
1.58e-86FFCP PHASE2:Mm9::chr7:92689753..92689757,-#_8622738231903069f699a518c38ca6e2p@chr7:92689753..92689757, -
1.58e-86FFCP PHASE1:Mm9::chr4:9880126..9880128,+#_8622738231903069f699a518c38ca6e2p@chr4:9880126..9880128, +
1.58e-86FFCP PHASE1:Mm9::chr16:66852878..66852880,+#_8622738231903069f699a518c38ca6e2p@chr16:66852878..66852880, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557319..55557330,+#_8622738231903069f699a518c38ca6e2p7@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr3:51025125..51025133,+#_8622738231903069f699a518c38ca6e2p@chr3:51025125..51025133, +
1.58e-86FFCP PHASE1:Mm9::chr8:44392310..44392319,-#_8622738231903069f699a518c38ca6e2p4@Zfp42
1.58e-86FFCP PHASE1:Mm9::chr7:92689753..92689757,-#_8622738231903069f699a518c38ca6e2p@chr7:92689753..92689757, -
1.58e-86FFCP PHASE2:Mm9::chr6:122774653..122774665,+#_8622738231903069f699a518c38ca6e2+, p@chr6:122774653..122774665
1.58e-86FFCP PHASE2:Mm9::chr16:44262965..44262975,-#_8622738231903069f699a518c38ca6e2p@chr16:44262965..44262975, -
1.58e-86FFCP PHASE1:Mm9::chr14:55556656..55556665,+#_8622738231903069f699a518c38ca6e2p@chr14:55556656..55556665, +
1.58e-86FFCP PHASE2:Mm9::chr11:114739327..114739352,+#_8622738231903069f699a518c38ca6e2p@chr11:114739327..114739352, +
1.58e-86FFCP PHASE2:Mm9::chr12:87810964..87810976,-#_8622738231903069f699a518c38ca6e2p@chr12:87810964..87810976, -
1.58e-86FFCP PHASE1:Mm9::chr9:122510273..122510281,+#_8622738231903069f699a518c38ca6e2p@chr9:122510273..122510281, +
1.58e-86FFCP PHASE2:Mm9::chr14:55556656..55556665,+#_8622738231903069f699a518c38ca6e2p@chr14:55556656..55556665, +
1.58e-86FFCP PHASE1:Mm9::chrX:35180221..35180224,+#_8622738231903069f699a518c38ca6e2p1@Rhox6
1.58e-86FFCP PHASE2:Mm9::chr9:59378043..59378047,-#_8622738231903069f699a518c38ca6e2p@chr9:59378043..59378047, -
1.58e-86FFCP PHASE2:Mm9::chr13:109236868..109236869,+#_8622738231903069f699a518c38ca6e2p@chr13:109236868..109236869, +
1.58e-86FFCP PHASE2:Mm9::chr8:28338006..28338016,-#_8622738231903069f699a518c38ca6e2p@chr8:28338006..28338016, -
1.58e-86FFCP PHASE1:Mm9::chr1:174143295..174143309,-#_8622738231903069f699a518c38ca6e2p@chr1:174143295..174143309, -
1.58e-86FFCP PHASE1:Mm9::chr14:55557319..55557330,+#_8622738231903069f699a518c38ca6e2p7@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr17:66833174..66833180,-#_8622738231903069f699a518c38ca6e2p@chr17:66833174..66833180, -
1.58e-86FFCP PHASE1:Mm9::chr8:28338006..28338016,-#_8622738231903069f699a518c38ca6e2p@chr8:28338006..28338016, -
1.58e-86FFCP PHASE1:Mm9::chr11:78698925..78698930,+#_8622738231903069f699a518c38ca6e2p@chr11:78698925..78698930, +
1.58e-86FFCP PHASE1:Mm9::chr9:59378043..59378047,-#_8622738231903069f699a518c38ca6e2p@chr9:59378043..59378047, -
1.58e-86FFCP PHASE1:Mm9::chrX:135868692..135868701,+#_8622738231903069f699a518c38ca6e2p@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr8:44392310..44392319,-#_8622738231903069f699a518c38ca6e2p4@Zfp42
1.58e-86FFCP PHASE1:Mm9::chr14:55557268..55557274,+#_8622738231903069f699a518c38ca6e2p14@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr6:12861081..12861085,+#_8622738231903069f699a518c38ca6e2p@chr6:12861081..12861085, +
1.58e-86FFCP PHASE2:Mm9::chr16:66852878..66852880,+#_8622738231903069f699a518c38ca6e2p@chr16:66852878..66852880, +
1.58e-86FFCP PHASE1:Mm9::chr19:53750863..53750906,+#_8622738231903069f699a518c38ca6e2p@chr19:53750863..53750906, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557268..55557274,+#_8622738231903069f699a518c38ca6e2p14@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chr4:133574662..133574669,-#_8622738231903069f699a518c38ca6e2p2@Lin28a
1.58e-86FFCP PHASE2:Mm9::chrX:132804797..132804808,+#_8622738231903069f699a518c38ca6e2p4@Ngfrap1
1.58e-86FFCP PHASE1:Mm9::chr13:109236868..109236869,+#_8622738231903069f699a518c38ca6e2p@chr13:109236868..109236869, +
1.58e-86FFCP PHASE1:Mm9::chrX:135868788..135868795,+#_8622738231903069f699a518c38ca6e2p@chrX:135868788..135868795, +
1.58e-86FFCP PHASE2:Mm9::chr6:12861081..12861085,+#_8622738231903069f699a518c38ca6e2p@chr6:12861081..12861085, +
1.58e-86FFCP PHASE1:Mm9::chr17:66833174..66833180,-#_8622738231903069f699a518c38ca6e2p@chr17:66833174..66833180, -
1.58e-86FFCP PHASE1:Mm9::chr16:44262965..44262975,-#_8622738231903069f699a518c38ca6e2p@chr16:44262965..44262975, -
1.58e-86FFCP PHASE2:Mm9::chrX:135868692..135868701,+#_8622738231903069f699a518c38ca6e2p@chrX:135868692..135868701, +
1.58e-86FFCP PHASE2:Mm9::chr14:55557307..55557316,+#_8622738231903069f699a518c38ca6e2p11@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr9:122510273..122510281,+#_8622738231903069f699a518c38ca6e2p@chr9:122510273..122510281, +
1.58e-86FFCP PHASE2:Mm9::chrX:35180221..35180224,+#_8622738231903069f699a518c38ca6e2p1@Rhox6
1.58e-86FFCP PHASE1:Mm9::chrX:22692718..22692721,+#_8622738231903069f699a518c38ca6e2+, p@chrX:22692718..22692721
1.58e-86FFCP PHASE2:Mm9::chr2:10444938..10444948,+#_8622738231903069f699a518c38ca6e2p@chr2:10444938..10444948, +
1.58e-86FFCP PHASE1:Mm9::chr12:87810964..87810976,-#_8622738231903069f699a518c38ca6e2p@chr12:87810964..87810976, -
1.58e-86FFCP PHASE2:Mm9::chr14:55557459..55557474,+#_8622738231903069f699a518c38ca6e2p6@Cmtm5
1.58e-86FFCP PHASE2:Mm9::chr11:78698925..78698930,+#_8622738231903069f699a518c38ca6e2p@chr11:78698925..78698930, +
1.58e-86FFCP PHASE1:Mm9::chr13:68409910..68409914,+#_8622738231903069f699a518c38ca6e2p@chr13:68409910..68409914, +
1.58e-86FFCP PHASE1:Mm9::chr9:114472387..114472401,-#_8622738231903069f699a518c38ca6e2p@chr9:114472387..114472401, -
1.58e-86FFCP PHASE2:Mm9::chr13:68409910..68409914,+#_8622738231903069f699a518c38ca6e2p@chr13:68409910..68409914, +
1.58e-86FFCP PHASE1:Mm9::chr17:6988793..6988807,-#_8622738231903069f699a518c38ca6e2p@chr17:6988793..6988807, -
1.58e-86FFCP PHASE2:Mm9::chr1:174143295..174143309,-#_8622738231903069f699a518c38ca6e2p@chr1:174143295..174143309, -
1.58e-86FFCP PHASE2:Mm9::chrX:135868788..135868795,+#_8622738231903069f699a518c38ca6e2p@chrX:135868788..135868795, +
1.58e-86FFCP PHASE2:Mm9::chr9:114472387..114472401,-#_8622738231903069f699a518c38ca6e2p@chr9:114472387..114472401, -
1.58e-86FFCP PHASE2:Mm9::chr3:51025125..51025133,+#_8622738231903069f699a518c38ca6e2p@chr3:51025125..51025133, +
1.58e-86FFCP PHASE1:Mm9::chr6:122774653..122774665,+#_8622738231903069f699a518c38ca6e2p@chr6:122774653..122774665, +
1.58e-86FFCP PHASE2:Mm9::chr4:133574662..133574669,-#_8622738231903069f699a518c38ca6e2p2@Lin28a
1.58e-86FFCP PHASE1:Mm9::chr14:55557459..55557474,+#_8622738231903069f699a518c38ca6e2p6@Cmtm5
1.58e-86FFCP PHASE1:Mm9::chrX:132804797..132804808,+#_8622738231903069f699a518c38ca6e2p4@Ngfrap1
1.58e-86FFCP PHASE2:Mm9::chr19:53750863..53750906,+#_8622738231903069f699a518c38ca6e2+, p@chr19:53750863..53750906
1.58e-86FFCP PHASE1:Mm9::chr2:10444938..10444948,+#_8622738231903069f699a518c38ca6e2p@chr2:10444938..10444948, +
1.52e-83FFCP PHASE1:Hg19::chr18:6286777..6286797,+#_e19025038b97451fd0b6701e7457beaep@chr18:6286777..6286797, +
1.52e-83FFCP PHASE2:Hg19::chr18:6286777..6286797,+#_e19025038b97451fd0b6701e7457beae+, p@chr18:6286777..6286797
2.66e-83FFCP PHASE1:Hg19::chr11:8857215..8857232,-#_4315d0d53702acc559b251374af8ceddp17@ST5
2.66e-83FFCP PHASE2:Hg19::chr11:8857215..8857232,-#_4315d0d53702acc559b251374af8ceddp17@ST5
1.46e-82FFCP PHASE2:Hg19::chr17:2278441..2278454,+#_c74526a46028465c8379c435ad251da8p13@SGSM2
1.46e-82FFCP PHASE1:Hg19::chr17:2278441..2278454,+#_c74526a46028465c8379c435ad251da8p13@SGSM2
1.46e-82FFCP PHASE2:Hg19::chr2:237683203..237683210,+#_c74526a46028465c8379c435ad251da8+, p@chr2:237683203..237683210
1.46e-82FFCP PHASE1:Hg19::chr2:237683203..237683210,+#_c74526a46028465c8379c435ad251da8p@chr2:237683203..237683210, +
2.53e-79FFCP PHASE1:Hg19::chr11:1946293..1946319,+#_7e505b0fd99dd1f219f4065d09c91b61p11@TNNT3
2.53e-79FFCP PHASE2:Hg19::chr11:1946293..1946319,+#_7e505b0fd99dd1f219f4065d09c91b61p11@TNNT3
6.22e-79FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_adfca23d7045aaf244c3d80b489c8866p@chr15:68344995..68345013, +
6.22e-79FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_adfca23d7045aaf244c3d80b489c8866p@chr15:68344995..68345013, +
3.19e-78FFCP PHASE1:Hg19::chr2:237683212..237683239,+#_7955c79ed778f63b47b942847266a8e2p@chr2:237683212..237683239, +
3.19e-78FFCP PHASE2:Hg19::chr2:237683212..237683239,+#_7955c79ed778f63b47b942847266a8e2p@chr2:237683212..237683239, +
4.83e-76FFCP PHASE1:Hg19::chr6:12161831..12161855,+#_0d840f82e1b45880f65f27a8df52f673p@chr6:12161831..12161855, +
4.83e-76FFCP PHASE2:Hg19::chr6:12161831..12161855,+#_0d840f82e1b45880f65f27a8df52f673p@chr6:12161831..12161855, +