Coexpression cluster:C117

Full id: C117_serous_clear_kidney_neuroectodermal_mesothelioma_endometrial_Intestinal

Phase1 CAGE Peaks

Hg19::chr10:3305882..3305893,+	p@chr10:3305882..3305893 +
Hg19::chr10:85857839..85857840,-	p@chr10:85857839..85857840 -
Hg19::chr10:85931768..85931785,-	p4@ENST00000514797 p4@uc001kct.2
Hg19::chr10:85931846..85931867,-	p1@ENST00000514797 p1@uc001kct.2
Hg19::chr10:96731879..96731924,+	p@chr10:96731879..96731924 +
Hg19::chr11:11833036..11833048,-	p@chr11:11833036..11833048 -
Hg19::chr11:89223721..89223728,-	p@chr11:89223721..89223728 -
Hg19::chr12:123070114..123070123,+	p@chr12:123070114..123070123 +
Hg19::chr12:132680939..132680977,+	p@chr12:132680939..132680977 +
Hg19::chr12:132681008..132681011,+	p@chr12:132681008..132681011 +
Hg19::chr12:132681018..132681026,+	p@chr12:132681018..132681026 +
Hg19::chr12:132681039..132681046,+	p@chr12:132681039..132681046 +
Hg19::chr12:132681059..132681070,+	p@chr12:132681059..132681070 +
Hg19::chr12:31652588..31652610,-	p@chr12:31652588..31652610 -
Hg19::chr12:39104065..39104071,-	p@chr12:39104065..39104071 -
Hg19::chr13:23467567..23467577,+	p@chr13:23467567..23467577 +
Hg19::chr13:23479449..23479452,+	p@chr13:23479449..23479452 +
Hg19::chr13:23486051..23486062,+	p@chr13:23486051..23486062 +
Hg19::chr14:64405176..64405183,+	p@chr14:64405176..64405183 +
Hg19::chr15:75397998..75398004,-	p@chr15:75397998..75398004 -
Hg19::chr16:2106134..2106163,+	p18@TSC2
Hg19::chr16:831621..831649,+	p@chr16:831621..831649 +
Hg19::chr17:36003553..36003559,-	p6@DDX52
Hg19::chr17:36068486..36068493,+	p@chr17:36068486..36068493 +
Hg19::chr17:73554365..73554374,+	p@chr17:73554365..73554374 +
Hg19::chr17:74128596..74128610,-	p@chr17:74128596..74128610 -
Hg19::chr17:74134377..74134388,-	p@chr17:74134377..74134388 -
Hg19::chr18:11959017..11959052,+	p@chr18:11959017..11959052 +
Hg19::chr18:52274330..52274344,-	p@chr18:52274330..52274344 -
Hg19::chr18:69246146..69246156,-	p3@LOC100505776
Hg19::chr18:69246167..69246179,-	p2@LOC100505776
Hg19::chr18:69246186..69246197,-	p1@LOC100505776
Hg19::chr18:6982576..6982589,-	p@chr18:6982576..6982589 -
Hg19::chr19:40697978..40698010,+	p6@MAP3K10
Hg19::chr19:40762956..40762973,-	p@chr19:40762956..40762973 -
Hg19::chr1:205601064..205601087,-	p4@ELK4
Hg19::chr1:214650069..214650072,-	p@chr1:214650069..214650072 -
Hg19::chr1:214650077..214650084,-	p@chr1:214650077..214650084 -
Hg19::chr1:214650108..214650118,-	p@chr1:214650108..214650118 -
Hg19::chr1:215257098..215257110,+	p@chr1:215257098..215257110 +
Hg19::chr1:215257112..215257119,+	p@chr1:215257112..215257119 +
Hg19::chr1:224370589..224370611,+	p3@DEGS1
Hg19::chr1:46787487..46787492,-	p@chr1:46787487..46787492 -
Hg19::chr1:46797583..46797614,-	p@chr1:46797583..46797614 -
Hg19::chr1:94780142..94780153,-	p@chr1:94780142..94780153 -
Hg19::chr1:94780176..94780187,-	p@chr1:94780176..94780187 -
Hg19::chr20:15866720..15866725,-	p@chr20:15866720..15866725 -
Hg19::chr20:15871874..15871910,-	p@chr20:15871874..15871910 -
Hg19::chr20:15872559..15872568,-	p@chr20:15872559..15872568 -
Hg19::chr20:15873011..15873014,-	p@chr20:15873011..15873014 -
Hg19::chr20:15878694..15878728,-	p@chr20:15878694..15878728 -
Hg19::chr20:15879525..15879530,-	p@chr20:15879525..15879530 -
Hg19::chr20:15891295..15891297,-	p@chr20:15891295..15891297 -
Hg19::chr20:15896547..15896555,-	p@chr20:15896547..15896555 -
Hg19::chr20:15896790..15896803,-	p@chr20:15896790..15896803 -
Hg19::chr20:15898490..15898493,-	p@chr20:15898490..15898493 -
Hg19::chr20:15916678..15916682,-	p@chr20:15916678..15916682 -
Hg19::chr20:15942024..15942025,-	p@chr20:15942024..15942025 -
Hg19::chr20:15948322..15948327,-	p@chr20:15948322..15948327 -
Hg19::chr20:15954227..15954237,-	p@chr20:15954227..15954237 -
Hg19::chr20:15966439..15966448,-	p@chr20:15966439..15966448 -
Hg19::chr20:15967531..15967544,+	p@chr20:15967531..15967544 +
Hg19::chr20:15967629..15967655,+	p@chr20:15967629..15967655 +
Hg19::chr20:15967658..15967661,+	p@chr20:15967658..15967661 +
Hg19::chr20:15967691..15967705,+	p@chr20:15967691..15967705 +
Hg19::chr20:58319374..58319386,-	p@chr20:58319374..58319386 -
Hg19::chr20:60934189..60934206,-	p@chr20:60934189..60934206 -
Hg19::chr20:60934239..60934260,-	p@chr20:60934239..60934260 -
Hg19::chr20:62113538..62113571,-	p@chr20:62113538..62113571 -
Hg19::chr21:44441260..44441273,+	p3@PKNOX1
Hg19::chr22:31495739..31495756,+	p33@SMTN
Hg19::chr22:31739255..31739259,-	p28@PATZ1
Hg19::chr22:46812806..46812838,-	p@chr22:46812806..46812838 -
Hg19::chr2:231906019..231906031,+	p6@C2orf72
Hg19::chr2:239066313..239066357,+	p@chr2:239066313..239066357 +
Hg19::chr2:28503793..28503800,+	p@chr2:28503793..28503800 +
Hg19::chr2:31637816..31637836,-	p7@XDH
Hg19::chr2:34902620..34902625,+	p1@ENST00000423663
Hg19::chr2:34902895..34902908,+	p1@uc002rpc.1
Hg19::chr2:34935472..34935477,+	p@chr2:34935472..34935477 +
Hg19::chr2:34971950..34971953,+	p@chr2:34971950..34971953 +
Hg19::chr3:168582660..168582692,+	p@chr3:168582660..168582692 +
Hg19::chr3:168802151..168802153,-	p@chr3:168802151..168802153 -
Hg19::chr3:168861573..168861582,-	p@chr3:168861573..168861582 -
Hg19::chr3:168864427..168864464,-	p19@MECOM
Hg19::chr3:168864831..168864851,-	p9@MECOM
Hg19::chr3:168864936..168864953,-	p8@MECOM
Hg19::chr3:168865144..168865160,-	p6@MECOM
Hg19::chr3:168865250..168865272,-	p5@MECOM
Hg19::chr3:168865278..168865292,-	p14@MECOM
Hg19::chr3:168865323..168865337,-	p15@MECOM
Hg19::chr3:168865364..168865376,-	p11@MECOM
Hg19::chr3:168865497..168865516,-	p16@MECOM
Hg19::chr4:135331403..135331405,-	p@chr4:135331403..135331405 -
Hg19::chr4:135507221..135507238,-	p@chr4:135507221..135507238 -
Hg19::chr4:159430869..159430885,-	p1@ENST00000502566
Hg19::chr4:159442958..159442977,+	p4@RXFP1
Hg19::chr4:159443003..159443018,+	p3@RXFP1
Hg19::chr4:159443024..159443056,+	p1@RXFP1
Hg19::chr4:159446395..159446403,+	p@chr4:159446395..159446403 +
Hg19::chr4:159541085..159541093,+	p@chr4:159541085..159541093 +
Hg19::chr4:175184004..175184014,-	p16@FBXO8
Hg19::chr4:175184030..175184041,-	p13@FBXO8
Hg19::chr4:175184051..175184061,-	p18@FBXO8
Hg19::chr4:175184162..175184175,-	p9@FBXO8
Hg19::chr4:175184180..175184194,-	p2@FBXO8
Hg19::chr4:175184203..175184220,-	p6@FBXO8
Hg19::chr4:175184241..175184250,-	p14@FBXO8
Hg19::chr4:175204717..175204728,-	p17@FBXO8
Hg19::chr4:25649638..25649642,+	p@chr4:25649638..25649642 +
Hg19::chr5:175799252..175799262,-	p@chr5:175799252..175799262 -
Hg19::chr5:31936363..31936370,+	p19@PDZD2
Hg19::chr5:31936389..31936400,+	p11@PDZD2
Hg19::chr5:36105527..36105539,-	p@chr5:36105527..36105539 -
Hg19::chr6:137844183..137844191,-	p@chr6:137844183..137844191 -
Hg19::chr6:13925318..13925342,+	p2@RNF182
Hg19::chr6:14049473..14049508,+	p@chr6:14049473..14049508 +
Hg19::chr6:24323980..24323989,-	p@chr6:24323980..24323989 -
Hg19::chr6:47602833..47602848,+	p@chr6:47602833..47602848 +
Hg19::chr6:64025774..64025778,-	p@chr6:64025774..64025778 -
Hg19::chr6:64043904..64043907,-	p@chr6:64043904..64043907 -
Hg19::chr6:64049378..64049403,-	p@chr6:64049378..64049403 -
Hg19::chr6:64050722..64050726,-	p@chr6:64050722..64050726 -
Hg19::chr6:64145806..64145815,-	p@chr6:64145806..64145815 -
Hg19::chr6:64151611..64151636,-	p@chr6:64151611..64151636 -
Hg19::chr6:64152250..64152255,-	p@chr6:64152250..64152255 -
Hg19::chr6:72241518..72241524,+	p@chr6:72241518..72241524 +
Hg19::chr6:75233360..75233363,+	p@chr6:75233360..75233363 +
Hg19::chr7:107643719..107643730,-	p9@LAMB1
Hg19::chr7:107644847..107644884,-	p@chr7:107644847..107644884 -
Hg19::chr7:107707064..107707079,-	p@chr7:107707064..107707079 -
Hg19::chr7:107707083..107707099,-	p@chr7:107707083..107707099 -
Hg19::chr7:134627808..134627842,+	p@chr7:134627808..134627842 +
Hg19::chr7:138816862..138816869,-	p@chr7:138816862..138816869 -
Hg19::chr7:151791137..151791153,+	p3@GALNT11
Hg19::chr7:151791485..151791495,+	p15@GALNT11
Hg19::chr7:98735181..98735195,-	p@chr7:98735181..98735195 -
Hg19::chr7:98735218..98735228,-	p@chr7:98735218..98735228 -
Hg19::chr7:98735238..98735250,-	p@chr7:98735238..98735250 -
Hg19::chr8:101363016..101363029,+	p@chr8:101363016..101363029 +
Hg19::chr8:142247795..142247863,-	p@chr8:142247795..142247863 -
Hg19::chr8:142247940..142247948,-	p@chr8:142247940..142247948 -
Hg19::chr8:144124493..144124500,+	p8@C8orf31
Hg19::chr8:144124531..144124572,+	p2@C8orf31
Hg19::chr8:20070210..20070250,+	p@chr8:20070210..20070250 +
Hg19::chr9:132472174..132472192,+	p@chr9:132472174..132472192 +
Hg19::chr9:136856204..136856219,+	p@chr9:136856204..136856219 +
Hg19::chr9:138466794..138466798,+	p1@ENST00000445997
Hg19::chr9:90000420..90000454,-	p@chr9:90000420..90000454 -
Hg19::chr9:90680465..90680480,-	p1@uc004apv.1
Hg19::chrX:16329834..16329838,-	p@chrX:16329834..16329838 -
Hg19::chrX:16422567..16422570,-	p@chrX:16422567..16422570 -
Hg19::chrX:16530591..16530601,-	p@chrX:16530591..16530601 -
Hg19::chrX:16530614..16530628,-	p@chrX:16530614..16530628 -
Hg19::chrX:35711783..35711785,+	p@chrX:35711783..35711785 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

---

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

---

GO ID	GO name	FDR corrected p-value
GO:0005515	protein binding	0.0291416460614624
GO:0004855	xanthine oxidase activity	0.0291416460614624
GO:0043257	laminin-8 complex	0.0291416460614624
GO:0005607	laminin-2 complex	0.0291416460614624
GO:0016727	oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor	0.0291416460614624
GO:0016726	oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor	0.0364195514862496
GO:0004854	xanthine dehydrogenase activity	0.0364195514862496
GO:0043259	laminin-10 complex	0.0364195514862496
GO:0050794	regulation of cellular process	0.0436944567728137
GO:0004706	JUN kinase kinase kinase activity	0.0436944567728137
GO:0033559	unsaturated fatty acid metabolic process	0.0477161790289686
GO:0006636	unsaturated fatty acid biosynthetic process	0.0477161790289686
GO:0044424	intracellular part	0.0477161790289686
GO:0050789	regulation of biological process	0.0477161790289686
GO:0042803	protein homodimerization activity	0.0477161790289686

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

---

Cell Type

Ontology term	p-value	n
serous secreting cell	9.37e-99	1
seromucus secreting cell	2.74e-50	2

Uber Anatomy

Ontology term	p-value	n
epithelium of female gonad	9.37e-99	1
epithelium of gonad	2.74e-50	2
female gonad	5.28e-09	13

Disease

Ontology term	p-value	n
ovary epithelial cancer	9.37e-99	1
clear cell adenocarcinoma	4.52e-50	2
adenocarcinoma	4.64e-17	25
female reproductive organ cancer	6.71e-16	27
reproductive organ cancer	6.74e-15	29
ovarian cancer	1.86e-08	14

Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

---

Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
{{{tfbs_overrepresentation_jaspar}}}

ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

---

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF	#promoters	Enrichment	p-value	q-value
CTBP2#1488	10	4.04625808640827	0.00021217666901423	0.00246710299879505
ESR1#2099	15	2.9776067705956	0.00017675745915185	0.00214905381564146

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

---

Copy Excel CSV PDF

Show 1050All entries

Search:

FF samples	Score

FF samples	Score
serous cystadenocarcinoma cell line:HTOA CNhs11827	0.91
clear cell carcinoma cell line:TEN CNhs11930	0.12
Adipocyte - breast, donor1 CNhs11051	0.00
Adipocyte - breast, donor2 CNhs11969	0.00
Adipocyte - omental, donor1 CNhs11054	0.00
Adipocyte - omental, donor2 CNhs12067	0.00
Adipocyte - omental, donor3 CNhs12068	0.00
Adipocyte - perirenal, donor1 CNhs12069	0.00
Adipocyte - subcutaneous, donor1 CNhs12494	0.00
Adipocyte - subcutaneous, donor2 CNhs11371	0.00

Showing 1 to 10 of 889 entries

Previous12345…89Next