Personal tools

UBERON:0003657: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003657
|alt_id=
|name=limb joint
|namespace=
|def="Any joint that is part of a (free) limb." [UBERON:cjm]
|xref=EMAPA:19204;;galen:LimbJoint;;MA:0000691
|is_a=UBERON:0000982;;UBERON:0004120
|synonym="joint of limb" EXACT [];;"joint of limb skeletal system" EXACT [Obol:automatic];;"skeletal limb joint" EXACT [GO:0036023]
|comment=Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses
|comment=Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Any joint that is part of a (free) limb." [UBERON:cjm]
|subset=grouping_class
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003657
|is_a=UBERON:0000982
|is_obsolete=
|located_in=
|located_in=
|name=limb joint
|namespace=
|obo_creation_date=
|part_of=UBERON:0002101
|part_of=UBERON:0002101
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym="joint of limb" EXACT [];;"joint of limb skeletal system" EXACT [Obol:automatic];;"skeletal limb joint" EXACT [GO:0036023]
|union_of=
|xref=EMAPA:19204;;galen:LimbJoint;;MA:0000691
}}
}}

Revision as of 11:25, 12 September 2014

Name:limb joint
Definition:"Any joint that is part of a (free) limb." [UBERON:cjm]
Xrefs:
links:

EMAPA:19204
galen:LimbJoint

MA:0000691
Synonyms: "joint of limb" EXACT []
"joint of limb skeletal system" EXACT [Obol:automatic]
"skeletal limb joint" EXACT [GO:0036023]
Comments:Most limb joints are synovial, but a few such as the tibiofibular joints are syndesmoses
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000982(skeletal joint)
part_of:UBERON:0002101(limb)



Children

is a:UBERON:0003840 (hindlimb joint),UBERON:0011139 (synovial limb joint)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003657 (limb joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results