UBERON:0000118: Difference between revisions
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|def="Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds] | |def="Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds] | ||
|xref=BTO:0001643;;EHDAA2:0004089;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png;;ncithesaurus:Respiratory_Diverticulum;;SCTID:361427007 | |xref=BTO:0001643;;EHDAA2:0004089;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png;;ncithesaurus:Primary_Bronchial_Bud;;ncithesaurus:Respiratory_Diverticulum;;SCTID:361427007 | ||
|is_a= | |is_a=UBERON:0005153;;UBERON:0005911 | ||
|synonym="lung bud" RELATED PLURAL [];;"primary lung bud" RELATED [GO:0060572];;"respiratory diverticulum" RELATED [Wikipedia:Lung_buds] | |synonym="lung bud" RELATED PLURAL [];;"primary lung bud" RELATED [GO:0060572];;"respiratory diverticulum" RELATED [Wikipedia:Lung_buds] | ||
|comment= | |comment= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 16:56, 26 June 2012
| Name: | lung bud | ||
|---|---|---|---|
| Definition: | "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds] | ||
| Xrefs: |
| ||
| Synonyms: |
"lung bud" RELATED PLURAL [] "primary lung bud" RELATED [GO:0060572] "respiratory diverticulum" RELATED [Wikipedia:Lung_buds] |
200px-Gray948.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005153(epithelial bud),UBERON:0005911(endo-epithelium) |
|---|
Children
| develops from: | UBERON:0002048 (lung) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000118 (lung bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.5e-81 | FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_0c6774dc0fc5c12fe6f1e11e3c5a7ea0 | p4@Tbx4 |
| 3.5e-81 | FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_0c6774dc0fc5c12fe6f1e11e3c5a7ea0 | p4@Tbx4 |
| 1.94e-76 | FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_2a840244afd700eed1fd220726812e19 | p1@ENSMUST00000134305 |
| 1.94e-76 | FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_2a840244afd700eed1fd220726812e19 | p1@ENSMUST00000134305 |
| 6.06e-75 | FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_1717f3bcd92032d47f05905f2350f356 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 6.06e-75 | FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_1717f3bcd92032d47f05905f2350f356 | p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1 |
| 7.98e-75 | FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_c4382425bdc59c0a70b6f62d538616ee | p6@Tbx4 |
| 7.98e-75 | FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_c4382425bdc59c0a70b6f62d538616ee | p6@Tbx4 |
| 3.64e-74 | FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_64137b09a5887372273d01e6843a3855 | p@chr8:94878479..94878503, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_64137b09a5887372273d01e6843a3855 | p@chr11:59457994..59457997, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_64137b09a5887372273d01e6843a3855 | p@chr12:57636003..57636017, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_64137b09a5887372273d01e6843a3855 | p@chr12:57598716..57598720, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_64137b09a5887372273d01e6843a3855 | p@chr12:57636003..57636017, - |
| 3.64e-74 | FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_64137b09a5887372273d01e6843a3855 | p@chr4:138812977..138812992, + |
| 3.64e-74 | FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_64137b09a5887372273d01e6843a3855 | p@chr11:59457994..59457997, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_64137b09a5887372273d01e6843a3855 | p@chr12:57598716..57598720, - |
| 3.64e-74 | FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_64137b09a5887372273d01e6843a3855 | p@chr4:138812977..138812992, + |
| 3.64e-74 | FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_64137b09a5887372273d01e6843a3855 | p@chr8:94878479..94878503, - |
| 3.06e-70 | FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_42cfdaaf4b7a1732dfa9ea19e9f7ed0f | p8@Nkx2-1 |
| 3.06e-70 | FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_42cfdaaf4b7a1732dfa9ea19e9f7ed0f | p8@Nkx2-1 |
| 3.48e-70 | FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_9a2afd9917323378ab15577084408fab | p2@E030019B13Rik |
| 3.48e-70 | FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_9a2afd9917323378ab15577084408fab | p2@E030019B13Rik |
| 3.96e-70 | FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_b2c78f184d2e03a7838901bfb1d85876 | p10@Nebl |
| 3.96e-70 | FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_b2c78f184d2e03a7838901bfb1d85876 | p10@Nebl |
| 4.5e-70 | FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_87a278cf51a142a28715606fe9679053 | p9@Nkx2-1 |
| 4.5e-70 | FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_87a278cf51a142a28715606fe9679053 | p9@Nkx2-1 |
| 9.69e-69 | FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_c6ab621df6f74b29687ac8ae14e22ca6 | p@chr12:57598537..57598547, - |
| 9.69e-69 | FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_c6ab621df6f74b29687ac8ae14e22ca6 | p3@Trpm6 |
| 9.69e-69 | FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_c6ab621df6f74b29687ac8ae14e22ca6 | p3@E030019B13Rik |
| 9.69e-69 | FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_c6ab621df6f74b29687ac8ae14e22ca6 | p@chr12:57598537..57598547, - |
| 9.69e-69 | FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_c6ab621df6f74b29687ac8ae14e22ca6 | p3@E030019B13Rik |
| 9.69e-69 | FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_c6ab621df6f74b29687ac8ae14e22ca6 | p3@Trpm6 |
| 1.11e-68 | FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_ae4f793183db9de06e10a2872856af05 | p@chr14:115241755..115241762, - |
| 1.11e-68 | FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_ae4f793183db9de06e10a2872856af05 | p@chr14:115241755..115241762, - |
| 1.27e-68 | FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_cc54afc4a4656b6df3e3bfc1114fc373 | p@chr4:138812999..138813015, + |
| 1.27e-68 | FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_cc54afc4a4656b6df3e3bfc1114fc373 | p@chr4:138812999..138813015, + |
| 4.47e-68 | FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c63d69373c753807182a75c0583cafe1 | p@chr5:120282691..120282701, + |
| 4.47e-68 | FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c63d69373c753807182a75c0583cafe1 | p@chr5:120282691..120282701, + |
| 5.44e-68 | FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr2:66524237..66524246, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr1:184610062..184610074, + |
| 5.44e-68 | FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr2:66524237..66524246, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr14:70922576..70922589, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_d3b1edeffe2f553ba411a688d9bac3f7 | p3@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_d3b1edeffe2f553ba411a688d9bac3f7 | p4@Sftpb |
| 5.44e-68 | FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr14:70921265..70921285, - |
| 5.44e-68 | FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr14:70922576..70922589, - |
| 5.44e-68 | FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_d3b1edeffe2f553ba411a688d9bac3f7 | p4@Sftpb |
| 5.44e-68 | FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_d3b1edeffe2f553ba411a688d9bac3f7 | p3@Sftpb |
| 5.44e-68 | FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr1:184610062..184610074, + |
| 5.44e-68 | FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_d3b1edeffe2f553ba411a688d9bac3f7 | p@chr14:70921265..70921285, - |
| 5.08e-66 | FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_bf8edbaeb647932e7f155531e096d4f5 | p4@E030019B13Rik |
| 5.08e-66 | FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_bf8edbaeb647932e7f155531e096d4f5 | p4@E030019B13Rik |
| 4.92e-64 | FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_5e6db023f53a78e4f28ac1d8d9ea501c | p@chr12:57623172..57623185, - |
| 4.92e-64 | FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_5e6db023f53a78e4f28ac1d8d9ea501c | p@chr14:70922007..70922052, + |
| 4.92e-64 | FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_5e6db023f53a78e4f28ac1d8d9ea501c | p@chr12:57623172..57623185, - |
| 4.92e-64 | FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_5e6db023f53a78e4f28ac1d8d9ea501c | p@chr14:70922007..70922052, + |
| 5.59e-64 | FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_332cd94b9a53394e37d98f21451f5dc2 | p@chr5:28785436..28785450, - |
| 5.59e-64 | FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_332cd94b9a53394e37d98f21451f5dc2 | p@chr5:28785436..28785450, - |
| 6.35e-64 | FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_d9cb73ae931c9ea9ff3a26e43e65f219 | p@chr14:70922459..70922482, - |
| 6.35e-64 | FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_d9cb73ae931c9ea9ff3a26e43e65f219 | p@chr14:70922459..70922482, - |
| 2.55e-63 | FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_6861b5d8f185956c69749d22b0339571 | p4@Etv5 |
| 2.55e-63 | FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_6861b5d8f185956c69749d22b0339571 | p4@Etv5 |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72259797..72259814, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr14:70922486..70922510, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr14:70923240..70923251, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p4@Lamp3 |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72264890..72264911, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr14:70922486..70922510, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72259797..72259814, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72264418..72264441, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72264890..72264911, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p4@Lamp3 |
| 1.43e-62 | FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72263977..72263993, + |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72263977..72263993, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr12:57376690..57376716, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr6:72264418..72264441, + |
| 1.43e-62 | FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr14:70923240..70923251, - |
| 1.43e-62 | FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_eb4eca4a539e1b64cbebe6513f1b0a78 | p@chr12:57376690..57376716, - |
| 1.63e-62 | FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_36a4d0c4dfe971ac1f0561a0a9d9bbfd | p@chr6:72264609..72264653, - |
| 1.63e-62 | FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_36a4d0c4dfe971ac1f0561a0a9d9bbfd | p@chr6:72264609..72264653, - |
| 1.87e-62 | FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_df8cc23e5a9e45271323b4ba8a53e420 | p@chr6:129378567..129378573, - |
| 1.87e-62 | FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_df8cc23e5a9e45271323b4ba8a53e420 | p@chr6:129378567..129378573, - |
| 1.91e-62 | FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_5f056a71071ce73589d8555cfee0c8b5 | p16@Pde5a |
| 1.91e-62 | FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_5f056a71071ce73589d8555cfee0c8b5 | p16@Pde5a |
| 3.02e-62 | FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_b218b5f70a9db91bf930011e901bc68a | p7@Nkx2-1 |
| 3.02e-62 | FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_b218b5f70a9db91bf930011e901bc68a | p7@Nkx2-1 |
| 5.06e-62 | FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_ad6b22fe1ceb69b6e47800545a7b6208 | p@chr12:57636936..57636953, - |
| 5.06e-62 | FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_ad6b22fe1ceb69b6e47800545a7b6208 | p@chr12:57636936..57636953, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr17:67043399..67043410,-#_2ce4af1de2e956bc008d65dd654e47ad | p9@Ptprm |
| 7.58e-62 | FFCP PHASE1:Mm9::chr5:28785382..28785394,-#_2ce4af1de2e956bc008d65dd654e47ad | p@chr5:28785382..28785394, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr2:126950686..126950702,-#_2ce4af1de2e956bc008d65dd654e47ad | p@chr2:126950686..126950702, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr14:41949922..41949935,+#_2ce4af1de2e956bc008d65dd654e47ad | p@chr14:41949922..41949935, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr6:72259749..72259765,+#_2ce4af1de2e956bc008d65dd654e47ad | p@chr6:72259749..72259765, + |
| 7.58e-62 | FFCP PHASE1:Mm9::chr6:72264657..72264693,-#_2ce4af1de2e956bc008d65dd654e47ad | p@chr6:72264657..72264693, - |
| 7.58e-62 | FFCP PHASE2:Mm9::chr12:57630433..57630438,-#_2ce4af1de2e956bc008d65dd654e47ad | p6@E030019B13Rik |
| 7.58e-62 | FFCP PHASE2:Mm9::chr16:19673341..19673350,-#_2ce4af1de2e956bc008d65dd654e47ad | p@chr16:19673341..19673350, - |
| 7.58e-62 | FFCP PHASE1:Mm9::chr12:57630433..57630438,-#_2ce4af1de2e956bc008d65dd654e47ad | p6@E030019B13Rik |
| 7.58e-62 | FFCP PHASE1:Mm9::chr14:70931508..70931519,+#_2ce4af1de2e956bc008d65dd654e47ad | p@chr14:70931508..70931519, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr14:41951096..41951112,+#_2ce4af1de2e956bc008d65dd654e47ad | p@chr14:41951096..41951112, + |
| 7.58e-62 | FFCP PHASE2:Mm9::chr14:41949964..41949979,+#_2ce4af1de2e956bc008d65dd654e47ad | p@chr14:41949964..41949979, + |
