UBERON:0002314: Difference between revisions
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|def="Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum] | |def="Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum] | ||
|xref=BM:MB-Tec;;BTO:0001793;;EFO:0000920;;EHDAA2:0004474;;EMAPA:19051;;FMA:83902;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png;;MA:0000211;;MAT:0000451;;ncithesaurus:Tectum_Mesencephali;;NIF_GrossAnatomy:birnlex_1032;;SCTID:362394008;;VHOG:0001388 | |xref=BM:MB-Tec;;BTO:0001793;;EFO:0000920;;EHDAA2:0004474;;EMAPA:19051;;FMA:83902;;http://upload.wikimedia.org/wikipedia/commons/c/cf/Gray685.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png;;MA:0000211;;MAT:0000451;;ncithesaurus:Tectum_Mesencephali;;NIF_GrossAnatomy:birnlex_1032;;SCTID:362394008;;TAO:0001353;;VHOG:0001388 | ||
|is_a=UBERON:0002950 | |is_a=UBERON:0002950 | ||
|synonym="mesencephalic tectum" EXACT [ZFA:0000445];;"neuraxis tectum" EXACT [];;"tectum" EXACT [];;"tectum mesencephali" EXACT [BTO:0001793] | |synonym="mesencephalic tectum" EXACT [ZFA:0000445];;"neuraxis tectum" EXACT [];;"t. mesencephali" RELATED LATIN [Wikipedia:Midbrain_tectum];;"tectum" EXACT [];;"tectum mesencephali" EXACT [BTO:0001793] | ||
|comment=In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP]. | |comment=In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP]. | ||
|alt_id=UBERON:FMA_83902-MA_0000211 | |alt_id=UBERON:FMA_83902-MA_0000211 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:01, 26 June 2012
| Name: | midbrain tectum | ||
|---|---|---|---|
| Definition: | "Dorsal part of the midbrain, consisting of the superior and inferior colliculi and the pretectal nuclei [MM, NIF]. The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_1032, Wikipedia:Midbrain_tectum] | ||
| Xrefs: |
| ||
| Synonyms: |
"mesencephalic tectum" EXACT [ZFA:0000445] "neuraxis tectum" EXACT [] "t. mesencephali" RELATED LATIN [Wikipedia:Midbrain_tectum] "tectum" EXACT [] "tectum mesencephali" EXACT [BTO:0001793] | ||
| Comments: | In adult humans it is present only in the mesencephalon as the inferior and the superior colliculi[WP]. | ||
| Alt_id: | UBERON:FMA_83902-MA_0000211 | ||
| Subset: | uberon_slim |
Gray685.png]
200px-Gray685.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002950(regional part of midbrain) |
|---|
Children
| part of: | UBERON:0002259 (corpora quadrigemina) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 16-22A4 (corpora quadrigemina, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002314 (midbrain tectum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.47e-44 | FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_dd5d34c00efd994ba472fc474a5f201f | p@chr1:158200818..158200829, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_dd5d34c00efd994ba472fc474a5f201f | p@chr1:158200818..158200829, - |
| 2.87e-30 | FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_f53d6eaaf29b9f7707d500b66d46da1a | p@chr15:22719411..22719436, + |
| 2.87e-30 | FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_f53d6eaaf29b9f7707d500b66d46da1a | p19@Rgs8 |
| 2.87e-30 | FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_f53d6eaaf29b9f7707d500b66d46da1a | p@chr15:22719411..22719436, + |
| 2.87e-30 | FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_f53d6eaaf29b9f7707d500b66d46da1a | p19@Rgs8 |
| 3.06e-23 | FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_838afba71ecb52f0d414c703180bdf1d | p@chr2:127098489..127098493, - |
| 3.06e-23 | FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_838afba71ecb52f0d414c703180bdf1d | p@chr2:127098489..127098493, - |
| 5.07e-23 | FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_be53148a8048ba6877494aa1b12c883d | p@chr2:158208771..158208772, + |
| 5.07e-23 | FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_be53148a8048ba6877494aa1b12c883d | p@chr16:96721083..96721092, + |
| 5.07e-23 | FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_be53148a8048ba6877494aa1b12c883d | p@chr16:96721083..96721092, + |
| 5.07e-23 | FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_be53148a8048ba6877494aa1b12c883d | p@chr2:158208771..158208772, + |
| 8.39e-23 | FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_d0e82ecdebadbeb8db5297a353e5f857 | p1@ENSMUST00000157206 |
| 8.39e-23 | FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_d0e82ecdebadbeb8db5297a353e5f857 | p1@ENSMUST00000157206 |
| 1.39e-22 | FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_e06452d8e8b9417eef283bd59286d917 | p7@Adipor2 |
| 1.39e-22 | FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_e06452d8e8b9417eef283bd59286d917 | p7@Adipor2 |
| 5.15e-19 | FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_9bfbfd3e42132c33fc2ee1c249fd06ca | p@chr14:52528327..52528336, - |
| 5.15e-19 | FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_9bfbfd3e42132c33fc2ee1c249fd06ca | p@chr14:52528327..52528336, - |
| 7.74e-19 | FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_b8a6d8fb23350708685aa99be2efd50d | p@chr19:32177340..32177351, - |
| 7.74e-19 | FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_b8a6d8fb23350708685aa99be2efd50d | p@chr19:32177340..32177351, - |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_6d3b154ed14e42ad4d5e3943f7eedfb0 | p@chr4:83035887..83035924, - |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_6d3b154ed14e42ad4d5e3943f7eedfb0 | p@chr4:98216369..98216408, + |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_6d3b154ed14e42ad4d5e3943f7eedfb0 | p@chr4:98216369..98216408, + |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_6d3b154ed14e42ad4d5e3943f7eedfb0 | p@chr4:83035887..83035924, - |
| 1.74e-18 | FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_63c01f45dc2431ca924ae7ed31541e73 | p@chr8:123151369..123151375, + |
| 1.74e-18 | FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_63c01f45dc2431ca924ae7ed31541e73 | p@chr8:123151369..123151375, + |
| 2.59e-18 | FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_a1fef5218c7b0a5b999e1191c9456833 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_a1fef5218c7b0a5b999e1191c9456833 | p@chr8:108091532..108091548, - |
| 2.59e-18 | FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_a1fef5218c7b0a5b999e1191c9456833 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_a1fef5218c7b0a5b999e1191c9456833 | p3@Prmt7 |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_a1fef5218c7b0a5b999e1191c9456833 | p3@Prmt7 |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_a1fef5218c7b0a5b999e1191c9456833 | p@chr8:108091532..108091548, - |
| 6.79e-16 | FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_856b17154c18c716692c57914c4aed7e | p@chr1:101686777..101686780, + |
| 6.79e-16 | FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_856b17154c18c716692c57914c4aed7e | p@chr1:101686777..101686780, + |
| 9.51e-16 | FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p6@Ptprr |
| 9.51e-16 | FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p3@Ninj2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p@chr17:69476739..69476749, + |
| 9.51e-16 | FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p3@Ninj2 |
| 9.51e-16 | FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p@chr17:69476739..69476749, + |
| 9.51e-16 | FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_c45dfbc5a36ec1803b155f9d8a3213d0 | p6@Ptprr |
| 1.33e-15 | FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_d034ce458c29f2d72a9f64bbd961e91c | p19@Gas7 |
| 1.33e-15 | FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_d034ce458c29f2d72a9f64bbd961e91c | p19@Gas7 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr10:111706834..111706844, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_30941ea0f28f8675268e49c9a9cf1dc4 | p1@uc007ovb.1 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_30941ea0f28f8675268e49c9a9cf1dc4 | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr10:111706834..111706844, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_30941ea0f28f8675268e49c9a9cf1dc4 | p1@uc007ovb.1 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_30941ea0f28f8675268e49c9a9cf1dc4 | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr11:55886412..55886420, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_30941ea0f28f8675268e49c9a9cf1dc4 | p@chr11:55886412..55886420, + |
| 3.62e-14 | FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_dc12e20a7cafb3382a6366c2f5d0ed4b | p@chr16:96720848..96720858, + |
| 3.62e-14 | FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_dc12e20a7cafb3382a6366c2f5d0ed4b | p@chr16:96720848..96720858, + |
| 3.62e-14 | FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_dc12e20a7cafb3382a6366c2f5d0ed4b | p63@Tcf7l2 |
| 3.62e-14 | FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_dc12e20a7cafb3382a6366c2f5d0ed4b | p63@Tcf7l2 |
| 4.85e-14 | FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_b70357752d60cd2a19f1f6f04e75f63e | p@chr14:93478934..93478944, - |
| 4.85e-14 | FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_b70357752d60cd2a19f1f6f04e75f63e | p@chr14:93478934..93478944, - |
| 6.5e-14 | FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_d5e9203c315904359bad8d5ede7d05dc | p2@Ghrh |
| 6.5e-14 | FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_d5e9203c315904359bad8d5ede7d05dc | p2@Ghrh |
| 8.69e-14 | FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p7@Fam169a |
| 8.69e-14 | FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p8@St18 |
| 8.69e-14 | FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p7@Fam169a |
| 8.69e-14 | FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p@chr2:31133553..31133564, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p@chr10:19891807..19891818, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p8@St18 |
| 8.69e-14 | FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p@chr10:19891807..19891818, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_5f7ac475bd183abcf62c0cbe60fc3b55 | p@chr2:31133553..31133564, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_a27073b4f857f9ba06e73bc5e083dfe1 | p@chr9:103085667..103085678, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_a27073b4f857f9ba06e73bc5e083dfe1 | p@chr2:163149068..163149077, + |
| 1.16e-13 | FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_a27073b4f857f9ba06e73bc5e083dfe1 | p9@Oprm1 |
| 1.16e-13 | FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_a27073b4f857f9ba06e73bc5e083dfe1 | p@chr2:163149068..163149077, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_a27073b4f857f9ba06e73bc5e083dfe1 | p9@Oprm1 |
| 1.16e-13 | FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_a27073b4f857f9ba06e73bc5e083dfe1 | p@chr9:103085667..103085678, + |
| 1.55e-13 | FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_83a6ef6aa30fbadf28ea0e399fa79b9f | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_83a6ef6aa30fbadf28ea0e399fa79b9f | p6@Skp1a |
| 1.55e-13 | FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_83a6ef6aa30fbadf28ea0e399fa79b9f | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_83a6ef6aa30fbadf28ea0e399fa79b9f | p6@Skp1a |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_9651cc3ea47cf253f6c8d429a0949c2b | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_9651cc3ea47cf253f6c8d429a0949c2b | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_9651cc3ea47cf253f6c8d429a0949c2b | p@chr10:31110259..31110265, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_9651cc3ea47cf253f6c8d429a0949c2b | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_9651cc3ea47cf253f6c8d429a0949c2b | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_9651cc3ea47cf253f6c8d429a0949c2b | p@chr4:43519210..43519232, + |
| 2.06e-13 | FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_9651cc3ea47cf253f6c8d429a0949c2b | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_9651cc3ea47cf253f6c8d429a0949c2b | p@chr4:43519210..43519232, + |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_9651cc3ea47cf253f6c8d429a0949c2b | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_9651cc3ea47cf253f6c8d429a0949c2b | p@chr10:31110259..31110265, - |
| 1.2e-12 | FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_06b93049d46f10e2215e264721da5791 | p3@Rgs17 |
| 1.2e-12 | FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_06b93049d46f10e2215e264721da5791 | p3@Rgs17 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_dcd96565cf8f7be2f115a0454d7bb99f | p1@ENSMUST00000124586 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_dcd96565cf8f7be2f115a0454d7bb99f | p14@Fbxo7 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_dcd96565cf8f7be2f115a0454d7bb99f | p1@ENSMUST00000124586 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_dcd96565cf8f7be2f115a0454d7bb99f | p14@Fbxo7 |
