UBERON:0002950
From FANTOM5_SSTAR
Name: | regional part of midbrain | ||
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Namespace: | FANTOM | ||
Definition: | "A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic] | ||
Xrefs: |
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Synonyms: |
"anatomical structure of brain of midbrain" EXACT [OBOL:automatic] "biological structure of brain of midbrain" EXACT [OBOL:automatic] "brain anatomical structure of midbrain" EXACT [OBOL:automatic] "brain biological structure of midbrain" EXACT [OBOL:automatic] "midbrain anatomical structure of brain" EXACT [OBOL:automatic] "midbrain biological structure of brain" EXACT [OBOL:automatic] "midbrain brain anatomical structure" EXACT [OBOL:automatic] "midbrain brain biological structure" EXACT [OBOL:automatic] "midbrain neuraxis segment" EXACT [OBOL:automatic] "midbrain regional part of brain" EXACT [OBOL:automatic] "midbrain segment" EXACT [FMA:61997] "midbrain segment of brain" EXACT [OBOL:automatic] "neuraxis segment of midbrain" EXACT [OBOL:automatic] "regional part of brain of midbrain" EXACT [OBOL:automatic] "segment of brain of midbrain" EXACT [OBOL:automatic] "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763] | ||
Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997 |
Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.
link to ontology dataset
data
Parents
is_a: | UBERON:0002616(regional part of brain) |
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part_of: | UBERON:0001891(midbrain) |
Children
is a: | UBERON:0002314 (midbrain tectum) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
- 16-22A4 (corpora quadrigemina, adult)
Mouse (Mus musculus)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10358-105E7 (substantia nigra, newborn, donor10223)
- 10371-105G2 (substantia nigra, adult, donor10258)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
- 16-22A4 (corpora quadrigemina, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002950 (regional part of midbrain), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
9.37e-99 | FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_13c30aef985bf4955f282afd3b276ebc | p@chr4:56229918..56229919, - |
9.37e-99 | FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_13c30aef985bf4955f282afd3b276ebc | p@chr10:68718064..68718067, - |
9.37e-99 | FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_13c30aef985bf4955f282afd3b276ebc | p5@C1orf130 |
9.37e-99 | FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_13c30aef985bf4955f282afd3b276ebc | +, p@chr9:139916913..139916917 |
9.37e-99 | FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_13c30aef985bf4955f282afd3b276ebc | p@chr10:68718064..68718067, - |
9.37e-99 | FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_13c30aef985bf4955f282afd3b276ebc | p@chr9:139916913..139916917, + |
9.37e-99 | FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_13c30aef985bf4955f282afd3b276ebc | p59@ANK3 |
9.37e-99 | FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_13c30aef985bf4955f282afd3b276ebc | p59@ANK3 |
9.37e-99 | FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_13c30aef985bf4955f282afd3b276ebc | p@chr4:56229918..56229919, - |
9.37e-99 | FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_13c30aef985bf4955f282afd3b276ebc | p5@C1orf130 |
2.55e-98 | FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_e507a854b733ac7500ee560022241c1b | p@chr1:65776926..65776928, + |
2.55e-98 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_e507a854b733ac7500ee560022241c1b | p@chr18:74702556..74702558, - |
2.55e-98 | FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_e507a854b733ac7500ee560022241c1b | p@chr5:57935348..57935354, - |
2.55e-98 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_e507a854b733ac7500ee560022241c1b | p@chr18:74702556..74702558, - |
2.55e-98 | FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_e507a854b733ac7500ee560022241c1b | p@chr5:57935348..57935354, - |
2.55e-98 | FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_e507a854b733ac7500ee560022241c1b | p@chr1:65776926..65776928, + |
1.23e-66 | FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_2afbe33b3ff608518733346f7e1625f9 | p@chr10:22967066..22967069, - |
1.23e-66 | FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_2afbe33b3ff608518733346f7e1625f9 | p@chr10:22967066..22967069, - |
1.23e-66 | FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_2afbe33b3ff608518733346f7e1625f9 | p@chr8:53312058..53312067, - |
1.23e-66 | FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_2afbe33b3ff608518733346f7e1625f9 | p6@PKD1L2 |
1.23e-66 | FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_2afbe33b3ff608518733346f7e1625f9 | p6@PKD1L2 |
1.23e-66 | FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_2afbe33b3ff608518733346f7e1625f9 | p@chr8:53312058..53312067, - |
1.23e-66 | FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_2afbe33b3ff608518733346f7e1625f9 | p@chr16:57309513..57309516, - |
1.23e-66 | FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_2afbe33b3ff608518733346f7e1625f9 | p@chr16:57309513..57309516, - |
2.39e-66 | FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_c996a56d86627bfda9b6528262ef7624 | p@chr1:44956567..44956571, + |
2.39e-66 | FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_c996a56d86627bfda9b6528262ef7624 | p@chr14:95727527..95727529, - |
2.39e-66 | FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_c996a56d86627bfda9b6528262ef7624 | p@chr11:7340444..7340448, + |
2.39e-66 | FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_c996a56d86627bfda9b6528262ef7624 | p@chr11:7340444..7340448, + |
2.39e-66 | FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_c996a56d86627bfda9b6528262ef7624 | p@chr1:44956567..44956571, + |
2.39e-66 | FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_c996a56d86627bfda9b6528262ef7624 | p@chr14:95727527..95727529, - |
4.66e-66 | FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr9:79516011..79516022, - |
4.66e-66 | FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr14:105166013..105166017, + |
4.66e-66 | FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr13:43872447..43872452, - |
4.66e-66 | FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr9:79516011..79516022, - |
4.66e-66 | FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_fd449d7c45f1b7227f6c9fcce29a31ba | p8@OMG |
4.66e-66 | FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr13:43872447..43872452, - |
4.66e-66 | FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_fd449d7c45f1b7227f6c9fcce29a31ba | p8@OMG |
4.66e-66 | FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr14:105166013..105166017, + |
4.66e-66 | FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr13:34922094..34922105, + |
4.66e-66 | FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_fd449d7c45f1b7227f6c9fcce29a31ba | p@chr13:34922094..34922105, + |
1.46e-50 | FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_e5a8ce706b31c1f73ffd2233bd1c205c | p@chr9:108178201..108178203, + |
1.46e-50 | FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_e5a8ce706b31c1f73ffd2233bd1c205c | p@chrX:28627633..28627642, + |
1.46e-50 | FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_e5a8ce706b31c1f73ffd2233bd1c205c | p@chrX:28627633..28627642, + |
1.46e-50 | FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_e5a8ce706b31c1f73ffd2233bd1c205c | p@chr9:108178201..108178203, + |
3.99e-50 | FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_5884383296f1fb2b0a521d6e821ca7bb | +, p@chr3:50717966..50717971 |
3.99e-50 | FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_5884383296f1fb2b0a521d6e821ca7bb | p@chr20:52570026..52570037, - |
3.99e-50 | FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_5884383296f1fb2b0a521d6e821ca7bb | p@chr3:50717966..50717971, + |
3.99e-50 | FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_5884383296f1fb2b0a521d6e821ca7bb | p@chr6:134626498..134626502, - |
3.99e-50 | FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_5884383296f1fb2b0a521d6e821ca7bb | p@chr6:89803656..89803659, + |
3.99e-50 | FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_5884383296f1fb2b0a521d6e821ca7bb | p@chr20:52570026..52570037, - |
3.99e-50 | FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_5884383296f1fb2b0a521d6e821ca7bb | p@chr6:134626498..134626502, - |
3.99e-50 | FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_5884383296f1fb2b0a521d6e821ca7bb | p@chr6:89803656..89803659, + |
6.58e-50 | FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_2ef63967c4239e70449c0ae05a8e1749 | p@chr17:70910145..70910148, - |
6.58e-50 | FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_2ef63967c4239e70449c0ae05a8e1749 | p@chr17:3479944..3479947, - |
6.58e-50 | FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_2ef63967c4239e70449c0ae05a8e1749 | p10@KCNJ10 |
6.58e-50 | FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_2ef63967c4239e70449c0ae05a8e1749 | p10@KCNJ10 |
6.58e-50 | FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_2ef63967c4239e70449c0ae05a8e1749 | p@chr9:137240632..137240635, + |
6.58e-50 | FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_2ef63967c4239e70449c0ae05a8e1749 | p2@LOC285796 |
6.58e-50 | FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_2ef63967c4239e70449c0ae05a8e1749 | p@chr9:137240632..137240635, + |
6.58e-50 | FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_2ef63967c4239e70449c0ae05a8e1749 | -, p@chr1:161275096..161275109 |
6.58e-50 | FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_2ef63967c4239e70449c0ae05a8e1749 | p@chr18:26665245..26665249, + |
6.58e-50 | FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_2ef63967c4239e70449c0ae05a8e1749 | p@chr9:19515907..19515918, - |
6.58e-50 | FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_2ef63967c4239e70449c0ae05a8e1749 | p21@PLEKHG1 |
6.58e-50 | FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_2ef63967c4239e70449c0ae05a8e1749 | p21@PLEKHG1 |
6.58e-50 | FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_2ef63967c4239e70449c0ae05a8e1749 | p@chr22:48980473..48980481, + |
6.58e-50 | FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_2ef63967c4239e70449c0ae05a8e1749 | -, p@chr17:3479944..3479947 |
6.58e-50 | FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_2ef63967c4239e70449c0ae05a8e1749 | p@chr22:48980473..48980481, + |
6.58e-50 | FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_2ef63967c4239e70449c0ae05a8e1749 | p2@LOC285796 |
6.58e-50 | FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_2ef63967c4239e70449c0ae05a8e1749 | p@chr1:161275096..161275109, - |
6.58e-50 | FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_2ef63967c4239e70449c0ae05a8e1749 | p@chr18:26665245..26665249, + |
6.58e-50 | FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_2ef63967c4239e70449c0ae05a8e1749 | p@chr17:70910145..70910148, - |
6.58e-50 | FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_2ef63967c4239e70449c0ae05a8e1749 | p@chr9:19515907..19515918, - |
2.38e-43 | FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_4403ce2cab20455902a71871ad3aabbe | p@chr19:40804786..40804795, - |
2.38e-43 | FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_4403ce2cab20455902a71871ad3aabbe | p@chr19:40804786..40804795, - |
6.62e-41 | FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_d9664c16ef6ac65725191592ce29be43 | p4@C5orf64 |
6.62e-41 | FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_d9664c16ef6ac65725191592ce29be43 | p4@C5orf64 |
6.62e-41 | FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_d9664c16ef6ac65725191592ce29be43 | p@chr4:139891920..139891924, - |
6.62e-41 | FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_d9664c16ef6ac65725191592ce29be43 | p@chr4:139891920..139891924, - |
9.91e-41 | FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_662cc2a2211374e97162d4d078d40b39 | p@chr5:152017019..152017026, + |
9.91e-41 | FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_662cc2a2211374e97162d4d078d40b39 | p@chr5:152017019..152017026, + |
9.91e-41 | FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_662cc2a2211374e97162d4d078d40b39 | p@chrX:13792462..13792477, - |
9.91e-41 | FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_662cc2a2211374e97162d4d078d40b39 | p@chr13:21100208..21100214, + |
9.91e-41 | FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_662cc2a2211374e97162d4d078d40b39 | p@chr13:21100208..21100214, + |
9.91e-41 | FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_662cc2a2211374e97162d4d078d40b39 | p@chrX:13792462..13792477, - |
1.48e-40 | FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p@chr1:161275238..161275250, - |
1.48e-40 | FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p10@CELSR2 |
1.48e-40 | FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p@chr9:139911084..139911102, - |
1.48e-40 | FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p@chr2:135170207..135170218, + |
1.48e-40 | FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p@chr2:135170207..135170218, + |
1.48e-40 | FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p@chr1:161275238..161275250, - |
1.48e-40 | FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p@chr17:71046459..71046462, - |
1.48e-40 | FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | -, p@chr9:139911084..139911102 |
1.48e-40 | FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p@chr17:71046459..71046462, - |
1.48e-40 | FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_8ecfa3a20ad4f4e7e9f950fa2f6c8e2d | p10@CELSR2 |
2.21e-40 | FFCP PHASE1:Hg19::chrX:103046993..103046994,+#_605c9bbf4e7696c6f9c981d61308471d | p@chrX:103046993..103046994, + |
2.21e-40 | FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_605c9bbf4e7696c6f9c981d61308471d | p19@ADARB2 |
2.21e-40 | FFCP PHASE2:Hg19::chr9:19513297..19513309,-#_605c9bbf4e7696c6f9c981d61308471d | p4@SLC24A2 |
2.21e-40 | FFCP PHASE1:Hg19::chr8:27522642..27522647,+#_605c9bbf4e7696c6f9c981d61308471d | p@chr8:27522642..27522647, + |
2.21e-40 | FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_605c9bbf4e7696c6f9c981d61308471d | p19@ADARB2 |
2.21e-40 | FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_605c9bbf4e7696c6f9c981d61308471d | p20@ADARB2 |