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|def="White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711]
|def="White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711]
|xref=BTO:0000236;;FMA:241998;;MA:0000945;;ncithesaurus:Cerebral_White_Matter;;NIF_GrossAnatomy:birnlex_711;;SCTID:361691006
|xref=BTO:0000236;;FMA:241998;;MA:0000945;;ncithesaurus:Cerebral_White_Matter;;NIF_GrossAnatomy:birnlex_711;;SCTID:361691006
|is_a=UBERON:0002316;;UBERON:0002791;;UBERON:0003544
|is_a=UBERON:0003544
|synonym=
|synonym=
|comment=
|comment=
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001893
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:02, 26 June 2012

Name:cerebral white matter
Definition:"White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711]
Xrefs:
links:

BTO:0000236
FMA:241998
MA:0000945
ncithesaurus:Cerebral_White_Matter
NIF_GrossAnatomy:birnlex_711

SCTID:361691006
Alt_id: UBERON:MA_0000945-FMA_241998

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003544(brain white matter)



Children

part of:UBERON:0002473 (intercerebral commissure)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002437 (cerebral white matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_fca4ab32ef4cdfed20a448f739d27f35p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_fca4ab32ef4cdfed20a448f739d27f35p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_fca4ab32ef4cdfed20a448f739d27f35p@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_fca4ab32ef4cdfed20a448f739d27f35p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_fca4ab32ef4cdfed20a448f739d27f35p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_fca4ab32ef4cdfed20a448f739d27f35p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_fca4ab32ef4cdfed20a448f739d27f35p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_fca4ab32ef4cdfed20a448f739d27f35p@chr17:73689469..73689476, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_4ba5d594ba9830c039e995877dbf67c6p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_4ba5d594ba9830c039e995877dbf67c6p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_4ba5d594ba9830c039e995877dbf67c6p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_4ba5d594ba9830c039e995877dbf67c6p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_4ba5d594ba9830c039e995877dbf67c6p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_4ba5d594ba9830c039e995877dbf67c6p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_4ba5d594ba9830c039e995877dbf67c6p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_4ba5d594ba9830c039e995877dbf67c6p@chr14:33926303..33926307, -
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_bd77259d8fd64c5b899424318cb3e771p10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_bd77259d8fd64c5b899424318cb3e771p10@SH3BP5
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_bd77259d8fd64c5b899424318cb3e771p@chr19:35788742..35788752, +
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_bd77259d8fd64c5b899424318cb3e771p@chr19:35788742..35788752, +
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_d3bdc90f4c7b4abe523c656963cfab03p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_d3bdc90f4c7b4abe523c656963cfab03p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_d3bdc90f4c7b4abe523c656963cfab03p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_d3bdc90f4c7b4abe523c656963cfab03p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_d3bdc90f4c7b4abe523c656963cfab03p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_d3bdc90f4c7b4abe523c656963cfab03p32@NAV3
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_d3bdc90f4c7b4abe523c656963cfab03p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_d3bdc90f4c7b4abe523c656963cfab03p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_d3bdc90f4c7b4abe523c656963cfab03p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_d3bdc90f4c7b4abe523c656963cfab03p@chr8:42037488..42037504, +
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_047328338c756e808a98ca09885fdd3cp16@FAM13C
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_047328338c756e808a98ca09885fdd3cp24@ARHGAP21
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_047328338c756e808a98ca09885fdd3cp@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_047328338c756e808a98ca09885fdd3cp16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_047328338c756e808a98ca09885fdd3cp24@ARHGAP21
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_047328338c756e808a98ca09885fdd3cp@chr6:163681762..163681767, +
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p15@PDE6B
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p26@PRLR
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_7ab0a3e4dd8a3e04ccc6211ebd6099d3p@chr8:101522298..101522305, -
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_eb21a17db8d96a435e813d686cc576b1p2@LOC154449
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_eb21a17db8d96a435e813d686cc576b1p2@LOC154449
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_9ee1ecc3a6fb315e197d9c1563a5da22p@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_9ee1ecc3a6fb315e197d9c1563a5da22p31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_9ee1ecc3a6fb315e197d9c1563a5da22p31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_9ee1ecc3a6fb315e197d9c1563a5da22p6@CYP4F3
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_9ee1ecc3a6fb315e197d9c1563a5da22p@chrX:103031196..103031205, -
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_9ee1ecc3a6fb315e197d9c1563a5da22p6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_9ee1ecc3a6fb315e197d9c1563a5da22p@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_9ee1ecc3a6fb315e197d9c1563a5da22p8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_9ee1ecc3a6fb315e197d9c1563a5da22p8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_9ee1ecc3a6fb315e197d9c1563a5da22p@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_9ee1ecc3a6fb315e197d9c1563a5da22p@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_9ee1ecc3a6fb315e197d9c1563a5da22p@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_9ee1ecc3a6fb315e197d9c1563a5da22p@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_9ee1ecc3a6fb315e197d9c1563a5da22p@chr10:7454514..7454525, -
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr11:45922629..45922637, +
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_94cbe0d6a6d00f2da6b1c81274ef0854p8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_94cbe0d6a6d00f2da6b1c81274ef0854p8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr17:36726052..36726061, -
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_94cbe0d6a6d00f2da6b1c81274ef0854p@chr17:36726052..36726061, -
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_71d5f2000bad4bae98d04d5bfb3e8524p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_71d5f2000bad4bae98d04d5bfb3e8524p@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_71d5f2000bad4bae98d04d5bfb3e8524p6@C6orf192
6.58e-50FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_71d5f2000bad4bae98d04d5bfb3e8524p8@IL1RAPL1
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_71d5f2000bad4bae98d04d5bfb3e8524p13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_71d5f2000bad4bae98d04d5bfb3e8524p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_71d5f2000bad4bae98d04d5bfb3e8524p10@PTPN3
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_71d5f2000bad4bae98d04d5bfb3e8524p8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_71d5f2000bad4bae98d04d5bfb3e8524p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_71d5f2000bad4bae98d04d5bfb3e8524p13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_71d5f2000bad4bae98d04d5bfb3e8524p8@IL1RAPL1
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_71d5f2000bad4bae98d04d5bfb3e8524p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_71d5f2000bad4bae98d04d5bfb3e8524p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_71d5f2000bad4bae98d04d5bfb3e8524p@chr4:7412700..7412704, +
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_71d5f2000bad4bae98d04d5bfb3e8524p6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_71d5f2000bad4bae98d04d5bfb3e8524p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_71d5f2000bad4bae98d04d5bfb3e8524p8@CARNS1
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_71d5f2000bad4bae98d04d5bfb3e8524p10@PTPN3

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