FF:10042-101F6
From FANTOM5_SSTAR
| Name: | corpus callosum, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10649 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| MicroRNAs: | Including candidate novel miRNAs(CAGE samples) Excluding candidate novel miRNAs(CAGE samples) |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA
link to dataset.
data
Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to
the median expression in the FANTOM5 collection is shown. Value is log10
transformed.
Analyst:NA
link to dataset.
data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this
sample. Pearson's correlation between the number of TFBSs estimated by
using the position-weight matrix for each promoter and its expression is
expressed as Z-score by taking the ones based on random position-weight
matrix, and the tail probability of the normal distribution corresponding
to the Z-score is taken as the resulting P-value. Lower P-value indicates
more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon
link to dataset.
data
library id: CNhs10649
FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in
169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon
link to dataset.
data
library id: CNhs10649
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0322 |
| 10 | 10 | 0.0224 |
| 100 | 100 | 0.265 |
| 101 | 101 | 0.792 |
| 102 | 102 | 0.857 |
| 103 | 103 | 0.0721 |
| 104 | 104 | 0.179 |
| 105 | 105 | 0.535 |
| 106 | 106 | 0.0349 |
| 107 | 107 | 0.226 |
| 108 | 108 | 0.757 |
| 109 | 109 | 0.00708 |
| 11 | 11 | 0.00855 |
| 110 | 110 | 0.0381 |
| 111 | 111 | 0.0325 |
| 112 | 112 | 0.245 |
| 113 | 113 | 0.465 |
| 114 | 114 | 0.0502 |
| 115 | 115 | 0.563 |
| 116 | 116 | 0.193 |
| 117 | 117 | 0.0145 |
| 118 | 118 | 0.129 |
| 119 | 119 | 0.12 |
| 12 | 12 | 0.769 |
| 120 | 120 | 0.083 |
| 121 | 121 | 0.956 |
| 122 | 122 | 0.596 |
| 123 | 123 | 0.549 |
| 124 | 124 | 0.349 |
| 125 | 125 | 0.388 |
| 126 | 126 | 0.181 |
| 127 | 127 | 0.448 |
| 128 | 128 | 0.191 |
| 129 | 129 | 0.533 |
| 13 | 13 | 0.00857 |
| 130 | 130 | 0.803 |
| 131 | 131 | 0.017 |
| 132 | 132 | 0.443 |
| 133 | 133 | 0.00732 |
| 134 | 134 | 0.147 |
| 135 | 135 | 0.128 |
| 136 | 136 | 0.0135 |
| 137 | 137 | 0.769 |
| 138 | 138 | 0.764 |
| 139 | 139 | 0.127 |
| 14 | 14 | 0.868 |
| 140 | 140 | 0.163 |
| 141 | 141 | 0.105 |
| 142 | 142 | 0.656 |
| 143 | 143 | 0.00891 |
| 144 | 144 | 0.824 |
| 145 | 145 | 0.286 |
| 146 | 146 | 0.939 |
| 147 | 147 | 0.684 |
| 148 | 148 | 0.339 |
| 149 | 149 | 0.441 |
| 15 | 15 | 0.0478 |
| 150 | 150 | 0.126 |
| 151 | 151 | 0.878 |
| 152 | 152 | 0.154 |
| 153 | 153 | 0.692 |
| 154 | 154 | 0.521 |
| 155 | 155 | 0.421 |
| 156 | 156 | 0.482 |
| 157 | 157 | 0.419 |
| 158 | 158 | 0.239 |
| 159 | 159 | 0.00492 |
| 16 | 16 | 0.0498 |
| 160 | 160 | 0.183 |
| 161 | 161 | 0.285 |
| 162 | 162 | 0.962 |
| 163 | 163 | 0.759 |
| 164 | 164 | 0.00332 |
| 165 | 165 | 0.152 |
| 166 | 166 | 0.93 |
| 167 | 167 | 0.442 |
| 168 | 168 | 0.819 |
| 169 | 169 | 0.0272 |
| 17 | 17 | 0.115 |
| 18 | 18 | 0.0411 |
| 19 | 19 | 0.441 |
| 2 | 2 | 0.786 |
| 20 | 20 | 0.105 |
| 21 | 21 | 0.0432 |
| 22 | 22 | 0.494 |
| 23 | 23 | 0.443 |
| 24 | 24 | 0.183 |
| 25 | 25 | 0.495 |
| 26 | 26 | 0.00449 |
| 27 | 27 | 0.726 |
| 28 | 28 | 0.85 |
| 29 | 29 | 0.00364 |
| 3 | 3 | 0.0271 |
| 30 | 30 | 0.436 |
| 31 | 31 | 0.993 |
| 32 | 32 | 0.00929 |
| 33 | 33 | 0.0778 |
| 34 | 34 | 0.889 |
| 35 | 35 | 0.355 |
| 36 | 36 | 0.117 |
| 37 | 37 | 0.036 |
| 38 | 38 | 0.415 |
| 39 | 39 | 0.443 |
| 4 | 4 | 1 |
| 40 | 40 | 0.155 |
| 41 | 41 | 0.482 |
| 42 | 42 | 0.182 |
| 43 | 43 | 0.117 |
| 44 | 44 | 0.0203 |
| 45 | 45 | 0.975 |
| 46 | 46 | 0.0251 |
| 47 | 47 | 0.0731 |
| 48 | 48 | 0.0644 |
| 49 | 49 | 0.225 |
| 5 | 5 | 0.925 |
| 50 | 50 | 0.62 |
| 51 | 51 | 0.438 |
| 52 | 52 | 0.918 |
| 53 | 53 | 0.574 |
| 54 | 54 | 0.661 |
| 55 | 55 | 0.698 |
| 56 | 56 | 0.608 |
| 57 | 57 | 0.201 |
| 58 | 58 | 0.35 |
| 59 | 59 | 0.169 |
| 6 | 6 | 0.69 |
| 60 | 60 | 0.131 |
| 61 | 61 | 0.157 |
| 62 | 62 | 0.15 |
| 63 | 63 | 0.347 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.305 |
| 66 | 66 | 0.283 |
| 67 | 67 | 0.297 |
| 68 | 68 | 0.735 |
| 69 | 69 | 0.42 |
| 7 | 7 | 0.164 |
| 70 | 70 | 0.0103 |
| 71 | 71 | 0.00669 |
| 72 | 72 | 0.445 |
| 73 | 73 | 0.0599 |
| 74 | 74 | 0.411 |
| 75 | 75 | 0.0121 |
| 76 | 76 | 0.128 |
| 77 | 77 | 0.302 |
| 78 | 78 | 7.15873e-4 |
| 79 | 79 | 0.146 |
| 8 | 8 | 0.0624 |
| 80 | 80 | 0.569 |
| 81 | 81 | 0.334 |
| 82 | 82 | 0.519 |
| 83 | 83 | 0.205 |
| 84 | 84 | 0.381 |
| 85 | 85 | 0.363 |
| 86 | 86 | 0.184 |
| 87 | 87 | 0.0076 |
| 88 | 88 | 0.687 |
| 89 | 89 | 0.281 |
| 9 | 9 | 0.776 |
| 90 | 90 | 0.0184 |
| 91 | 91 | 0.425 |
| 92 | 92 | 0.335 |
| 93 | 93 | 0.998 |
| 94 | 94 | 0.0288 |
| 95 | 95 | 0.0273 |
| 96 | 96 | 0.82 |
| 97 | 97 | 0.853 |
| 98 | 98 | 0.126 |
| 99 | 99 | 0.967 |
de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10649
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji
link to source data
data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002336 (corpus callosum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005162 (multi cell component structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000122 (neuron projection bundle)
0011215 (central nervous system cell part cluster)
0001018 (axon tract)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002473 (intercerebral commissure)
0005340 (dorsal telencephalic commissure)
0003544 (brain white matter)
0005970 (brain commissure)
0002316 (white matter)
0010317 (germ layer / neural crest derived structure)
0001020 (nervous system commissure)
0001017 (central nervous system)
0001016 (nervous system)
0001893 (telencephalon)
0001890 (forebrain)
0002437 (cerebral hemisphere white matter)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010042 (human corpus callosum - adult sample)
Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji
link to source data
data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
