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|namespace=
|namespace=
|def=
|def=
|xref=EHDAA:379;;EHDAA2:0000919;;EMAPA:16179
|xref=EHDAA2:0000919;;EHDAA:379;;EMAPA:16179
|is_a=UBERON:0003104;;UBERON:0005291
|is_a=UBERON:0003104;;UBERON:0004120;;UBERON:0005291
|synonym=
|synonym=
|comment=todo - merge
|comment=Editors note: todo - merge with LP mesoderm, review mesoderm/mesenchyme terminology
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
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|obo_creation_date=
|obo_creation_date=
|subset=emapa_ehdaa2
|subset=emapa_ehdaa2
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0003081
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:07, 26 June 2012

Name:lateral plate mesenchyme
Xrefs:
links:

EHDAA2:0000919
EHDAA:379

EMAPA:16179
Comments:Editors note: todo - merge with LP mesoderm, review mesoderm/mesenchyme terminology
Subset: emapa_ehdaa2

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006258 (lateral plate mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr12:53068889..53068898,-#_d36d1a886430c3cb7f43a9c63b8e3b03p@chr12:53068889..53068898, -
9.37e-99FFCP PHASE1:Hg19::chr12:53068923..53068932,-#_d36d1a886430c3cb7f43a9c63b8e3b03p@chr12:53068923..53068932, -
9.37e-99FFCP PHASE2:Hg19::chr12:53068889..53068898,-#_d36d1a886430c3cb7f43a9c63b8e3b03p@chr12:53068889..53068898, -
9.37e-99FFCP PHASE2:Hg19::chr12:53068923..53068932,-#_d36d1a886430c3cb7f43a9c63b8e3b03p@chr12:53068923..53068932, -
2.55e-98FFCP PHASE2:Hg19::chr5:59672718..59672753,-#_79d39321845401cb5d932f85efe55d26p@chr5:59672718..59672753, -
2.55e-98FFCP PHASE2:Hg19::chr8:72252453..72252458,-#_79d39321845401cb5d932f85efe55d26p@chr8:72252453..72252458, -
2.55e-98FFCP PHASE1:Hg19::chr15:45803320..45803343,+#_79d39321845401cb5d932f85efe55d26p1@HMGN2P46
2.55e-98FFCP PHASE1:Hg19::chr9:79379348..79379360,+#_79d39321845401cb5d932f85efe55d26p1@PCA3
2.55e-98FFCP PHASE2:Hg19::chr17:38976407..38976413,-#_79d39321845401cb5d932f85efe55d26p20@KRT10
2.55e-98FFCP PHASE2:Hg19::chr6:110964453..110964459,-#_79d39321845401cb5d932f85efe55d26p16@CDK19
2.55e-98FFCP PHASE1:Hg19::chr16:15811123..15811133,+#_79d39321845401cb5d932f85efe55d26p@chr16:15811123..15811133, +
2.55e-98FFCP PHASE1:Hg19::chr5:59672718..59672753,-#_79d39321845401cb5d932f85efe55d26p@chr5:59672718..59672753, -
2.55e-98FFCP PHASE2:Hg19::chr17:38975820..38975830,-#_79d39321845401cb5d932f85efe55d26p10@KRT10
2.55e-98FFCP PHASE1:Hg19::chr8:72252453..72252458,-#_79d39321845401cb5d932f85efe55d26p@chr8:72252453..72252458, -
2.55e-98FFCP PHASE2:Hg19::chr15:45803320..45803343,+#_79d39321845401cb5d932f85efe55d26p1@HMGN2P46
2.55e-98FFCP PHASE2:Hg19::chr16:15811123..15811133,+#_79d39321845401cb5d932f85efe55d26p@chr16:15811123..15811133, +
2.55e-98FFCP PHASE1:Hg19::chr6:110964453..110964459,-#_79d39321845401cb5d932f85efe55d26p16@CDK19
2.55e-98FFCP PHASE2:Hg19::chr9:79379348..79379360,+#_79d39321845401cb5d932f85efe55d26p1@PCA3
2.55e-98FFCP PHASE1:Hg19::chr17:38976407..38976413,-#_79d39321845401cb5d932f85efe55d26p20@KRT10
2.55e-98FFCP PHASE1:Hg19::chr17:38975820..38975830,-#_79d39321845401cb5d932f85efe55d26p10@KRT10
1.23e-66FFCP PHASE2:Hg19::chr12:53068552..53068579,-#_48a78f53951718f6a2e832feda1248dbp@chr12:53068552..53068579, -
1.23e-66FFCP PHASE2:Hg19::chr14:74454889..74454892,-#_48a78f53951718f6a2e832feda1248dbp10@ENTPD5
1.23e-66FFCP PHASE1:Hg19::chr12:53068552..53068579,-#_48a78f53951718f6a2e832feda1248dbp@chr12:53068552..53068579, -
1.23e-66FFCP PHASE1:Hg19::chr14:74454889..74454892,-#_48a78f53951718f6a2e832feda1248dbp10@ENTPD5
2.39e-66FFCP PHASE2:Hg19::chr1:209545365..209545377,+#_64cd4887cb4b51b27fff657fdf1d1267p1@ENST00000447257
2.39e-66FFCP PHASE2:Hg19::chr6:152585338..152585342,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr6:152585338..152585342, -
2.39e-66FFCP PHASE2:Hg19::chr19:38664309..38664322,+#_64cd4887cb4b51b27fff657fdf1d1267p@chr19:38664309..38664322, +
2.39e-66FFCP PHASE1:Hg19::chr17:38975850..38975854,-#_64cd4887cb4b51b27fff657fdf1d1267p19@KRT10
2.39e-66FFCP PHASE2:Hg19::chr2:179399981..179399988,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr2:179399981..179399988, -
2.39e-66FFCP PHASE2:Hg19::chr17:38975796..38975805,-#_64cd4887cb4b51b27fff657fdf1d1267p13@KRT10
2.39e-66FFCP PHASE1:Hg19::chr17:38978526..38978535,+#_64cd4887cb4b51b27fff657fdf1d1267p@chr17:38978526..38978535, +
2.39e-66FFCP PHASE1:Hg19::chr1:61416169..61416181,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr1:61416169..61416181, -
2.39e-66FFCP PHASE1:Hg19::chr19:51517928..51517936,-#_64cd4887cb4b51b27fff657fdf1d1267p2@AK026045
2.39e-66FFCP PHASE2:Hg19::chr2:179393635..179393640,-#_64cd4887cb4b51b27fff657fdf1d1267p167@TTN
2.39e-66FFCP PHASE1:Hg19::chr4:186434325..186434339,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr4:186434325..186434339, -
2.39e-66FFCP PHASE2:Hg19::chr17:38976909..38976919,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr17:38976909..38976919, -
2.39e-66FFCP PHASE1:Hg19::chr1:209545365..209545377,+#_64cd4887cb4b51b27fff657fdf1d1267p1@ENST00000447257
2.39e-66FFCP PHASE1:Hg19::chr17:33640639..33640650,+#_64cd4887cb4b51b27fff657fdf1d1267p@chr17:33640639..33640650, +
2.39e-66FFCP PHASE1:Hg19::chr6:152585338..152585342,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr6:152585338..152585342, -
2.39e-66FFCP PHASE2:Hg19::chr17:38975850..38975854,-#_64cd4887cb4b51b27fff657fdf1d1267p19@KRT10
2.39e-66FFCP PHASE1:Hg19::chr19:38664309..38664322,+#_64cd4887cb4b51b27fff657fdf1d1267p@chr19:38664309..38664322, +
2.39e-66FFCP PHASE1:Hg19::chr2:179399981..179399988,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr2:179399981..179399988, -
2.39e-66FFCP PHASE2:Hg19::chr17:38978526..38978535,+#_64cd4887cb4b51b27fff657fdf1d1267p@chr17:38978526..38978535, +
2.39e-66FFCP PHASE1:Hg19::chr17:38975796..38975805,-#_64cd4887cb4b51b27fff657fdf1d1267p13@KRT10
2.39e-66FFCP PHASE2:Hg19::chr1:61416169..61416181,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr1:61416169..61416181, -
2.39e-66FFCP PHASE1:Hg19::chr2:179393635..179393640,-#_64cd4887cb4b51b27fff657fdf1d1267p167@TTN
2.39e-66FFCP PHASE2:Hg19::chr19:51517928..51517936,-#_64cd4887cb4b51b27fff657fdf1d1267p2@AK026045
2.39e-66FFCP PHASE1:Hg19::chr17:38976909..38976919,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr17:38976909..38976919, -
2.39e-66FFCP PHASE2:Hg19::chr17:33640639..33640650,+#_64cd4887cb4b51b27fff657fdf1d1267p@chr17:33640639..33640650, +
2.39e-66FFCP PHASE2:Hg19::chr4:186434325..186434339,-#_64cd4887cb4b51b27fff657fdf1d1267p@chr4:186434325..186434339, -
4.66e-66FFCP PHASE2:Hg19::chr2:152520302..152520308,-#_96c59d039523d9720fb7c23b369688ddp@chr2:152520302..152520308, -
4.66e-66FFCP PHASE1:Hg19::chr13:103555720..103555725,+#_96c59d039523d9720fb7c23b369688ddp@chr13:103555720..103555725, +
4.66e-66FFCP PHASE2:Hg19::chr2:152520333..152520340,-#_96c59d039523d9720fb7c23b369688ddp@chr2:152520333..152520340, -
4.66e-66FFCP PHASE2:Hg19::chr2:152548420..152548425,-#_96c59d039523d9720fb7c23b369688ddp@chr2:152548420..152548425, -
4.66e-66FFCP PHASE2:Hg19::chr2:75869014..75869047,+#_96c59d039523d9720fb7c23b369688ddp@chr2:75869014..75869047, +
4.66e-66FFCP PHASE2:Hg19::chr3:52875783..52875812,-#_96c59d039523d9720fb7c23b369688ddp7@TMEM110
4.66e-66FFCP PHASE1:Hg19::chr2:75869014..75869047,+#_96c59d039523d9720fb7c23b369688ddp@chr2:75869014..75869047, +
4.66e-66FFCP PHASE2:Hg19::chr16:34571309..34571314,-#_96c59d039523d9720fb7c23b369688ddp@chr16:34571309..34571314, -
4.66e-66FFCP PHASE1:Hg19::chr3:52875783..52875812,-#_96c59d039523d9720fb7c23b369688ddp7@TMEM110
4.66e-66FFCP PHASE1:Hg19::chr2:152520302..152520308,-#_96c59d039523d9720fb7c23b369688ddp@chr2:152520302..152520308, -
4.66e-66FFCP PHASE2:Hg19::chr5:66771311..66771320,-#_96c59d039523d9720fb7c23b369688ddp2@ENST00000508512
4.66e-66FFCP PHASE1:Hg19::chr16:34571309..34571314,-#_96c59d039523d9720fb7c23b369688ddp@chr16:34571309..34571314, -
4.66e-66FFCP PHASE2:Hg19::chr2:179542558..179542568,-#_96c59d039523d9720fb7c23b369688ddp@chr2:179542558..179542568, -
4.66e-66FFCP PHASE2:Hg19::chr13:103555720..103555725,+#_96c59d039523d9720fb7c23b369688ddp@chr13:103555720..103555725, +
4.66e-66FFCP PHASE1:Hg19::chr10:94301107..94301111,-#_96c59d039523d9720fb7c23b369688ddp18@IDE
4.66e-66FFCP PHASE1:Hg19::chr2:152520333..152520340,-#_96c59d039523d9720fb7c23b369688ddp@chr2:152520333..152520340, -
4.66e-66FFCP PHASE1:Hg19::chr2:179542558..179542568,-#_96c59d039523d9720fb7c23b369688ddp@chr2:179542558..179542568, -
4.66e-66FFCP PHASE1:Hg19::chr2:152548420..152548425,-#_96c59d039523d9720fb7c23b369688ddp@chr2:152548420..152548425, -
4.66e-66FFCP PHASE1:Hg19::chr5:66771311..66771320,-#_96c59d039523d9720fb7c23b369688ddp2@ENST00000508512
4.66e-66FFCP PHASE2:Hg19::chr10:94301107..94301111,-#_96c59d039523d9720fb7c23b369688ddp18@IDE
1.46e-50FFCP PHASE2:Hg19::chr17:4448859..4448864,-#_5c5bee6acbce05dfc829931aa34564bep@chr17:4448859..4448864, -
1.46e-50FFCP PHASE2:Hg19::chr2:178753478..178753487,-#_5c5bee6acbce05dfc829931aa34564bep10@PDE11A
1.46e-50FFCP PHASE1:Hg19::chr17:4448859..4448864,-#_5c5bee6acbce05dfc829931aa34564bep@chr17:4448859..4448864, -
1.46e-50FFCP PHASE1:Hg19::chr2:178753478..178753487,-#_5c5bee6acbce05dfc829931aa34564bep10@PDE11A
2.42e-50FFCP PHASE1:Hg19::chr10:71351909..71351911,+#_2f8b11a5d5280d39ca25d46b3f51766ep@chr10:71351909..71351911, +
2.42e-50FFCP PHASE2:Hg19::chr10:71351909..71351911,+#_2f8b11a5d5280d39ca25d46b3f51766ep@chr10:71351909..71351911, +
2.42e-50FFCP PHASE2:Hg19::chr17:10421962..10421969,-#_2f8b11a5d5280d39ca25d46b3f51766ep2@MYH1
2.42e-50FFCP PHASE1:Hg19::chr2:152554090..152554096,-#_2f8b11a5d5280d39ca25d46b3f51766ep@chr2:152554090..152554096, -
2.42e-50FFCP PHASE2:Hg19::chr2:170783857..170783860,+#_2f8b11a5d5280d39ca25d46b3f51766ep@chr2:170783857..170783860, +
2.42e-50FFCP PHASE2:Hg19::chr16:56598984..56598990,+#_2f8b11a5d5280d39ca25d46b3f51766ep1@MT4
2.42e-50FFCP PHASE2:Hg19::chr20:33451327..33451358,-#_2f8b11a5d5280d39ca25d46b3f51766ep4@GGT7
2.42e-50FFCP PHASE1:Hg19::chr10:15646574..15646578,-#_2f8b11a5d5280d39ca25d46b3f51766ep11@ITGA8
2.42e-50FFCP PHASE1:Hg19::chr16:56598984..56598990,+#_2f8b11a5d5280d39ca25d46b3f51766ep1@MT4
2.42e-50FFCP PHASE1:Hg19::chr17:10421962..10421969,-#_2f8b11a5d5280d39ca25d46b3f51766ep2@MYH1
2.42e-50FFCP PHASE2:Hg19::chr10:15646574..15646578,-#_2f8b11a5d5280d39ca25d46b3f51766ep11@ITGA8
2.42e-50FFCP PHASE1:Hg19::chr2:170783857..170783860,+#_2f8b11a5d5280d39ca25d46b3f51766ep@chr2:170783857..170783860, +
2.42e-50FFCP PHASE2:Hg19::chr2:152554090..152554096,-#_2f8b11a5d5280d39ca25d46b3f51766ep@chr2:152554090..152554096, -
2.42e-50FFCP PHASE1:Hg19::chr20:33451327..33451358,-#_2f8b11a5d5280d39ca25d46b3f51766ep4@GGT7
3.99e-50FFCP PHASE2:Hg19::chr5:38484957..38484965,-#_70133603049e6e224281e711d97b1a99p@chr5:38484957..38484965, -
3.99e-50FFCP PHASE1:Hg19::chr2:152534162..152534168,-#_70133603049e6e224281e711d97b1a99p@chr2:152534162..152534168, -
3.99e-50FFCP PHASE2:Hg19::chr6:2744431..2744440,-#_70133603049e6e224281e711d97b1a99p@chr6:2744431..2744440, -
3.99e-50FFCP PHASE2:Hg19::chr6:56362490..56362515,-#_70133603049e6e224281e711d97b1a99p60@DST
3.99e-50FFCP PHASE1:Hg19::chr5:66771335..66771342,-#_70133603049e6e224281e711d97b1a99p3@ENST00000508512
3.99e-50FFCP PHASE2:Hg19::chr17:38976882..38976895,-#_70133603049e6e224281e711d97b1a99p@chr17:38976882..38976895, -
3.99e-50FFCP PHASE2:Hg19::chr16:15865517..15865522,-#_70133603049e6e224281e711d97b1a99p@chr16:15865517..15865522, -
3.99e-50FFCP PHASE1:Hg19::chr2:152409955..152409964,-#_70133603049e6e224281e711d97b1a99p@chr2:152409955..152409964, -
3.99e-50FFCP PHASE2:Hg19::chr5:66771414..66771419,-#_70133603049e6e224281e711d97b1a99p2@ENST00000515184
3.99e-50FFCP PHASE2:Hg19::chr2:152393727..152393736,-#_70133603049e6e224281e711d97b1a99p@chr2:152393727..152393736, -
3.99e-50FFCP PHASE1:Hg19::chr1:152483278..152483280,+#_70133603049e6e224281e711d97b1a99p1@LCE5A
3.99e-50FFCP PHASE1:Hg19::chr16:15865517..15865522,-#_70133603049e6e224281e711d97b1a99p@chr16:15865517..15865522, -

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