Personal tools

UBERON:0005291

From FANTOM5_SSTAR

Jump to: navigation, search

Name:embryonic tissue
Namespace:FANTOM
Definition:"A portion of tissue that is part of an embryo." [OBOL:automatic]
Synonyms: "developing tissue" RELATED []
"portion of embryonic tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000479(tissue),UBERON:0002050(embryonic structure)
part_of:UBERON:0000922(embryo),UBERON:0002050(embryonic structure)



Children

is a:UBERON:0000076 (external ectoderm),UBERON:0001049 (neural tube),UBERON:0003050 (olfactory placode),UBERON:0003051 (ear vesicle),UBERON:0003056 (pre-chordal neural plate),UBERON:0003071 (eye primordium),UBERON:0003075 (neural plate),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003099 (cranial neural crest),UBERON:0003220 (metanephric mesenchyme),UBERON:0003249 (epithelium of otic placode),UBERON:0003820 (prostate bud),UBERON:0003894 (liver primordium),UBERON:0003922 (pancreatic epithelial bud),UBERON:0004061 (neural tube mantle layer),UBERON:0004117 (pharyngeal pouch),UBERON:0004140 (primary heart field),UBERON:0004141 (heart tube),UBERON:0005062 (neural fold),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme),UBERON:0005295 (sex cord),UBERON:0005333 (mammary bud),UBERON:0005356 (Rathke's pouch),UBERON:0005428 (vagal neural crest),UBERON:0005641 (otocyst epithelium),UBERON:0005866 (pre-cartilage condensation),UBERON:0005891 (coelomic epithelium),UBERON:0006258 (lateral plate mesenchyme),UBERON:0006267 (notochordal plate),UBERON:0006293 (spleen primordium),UBERON:0007005 (cardiac mesoderm),UBERON:0007383 (enveloping layer of ectoderm),UBERON:0007690 (early pharyngeal endoderm),UBERON:0008835 (hepatic diverticulum),UBERON:0009526 (maxillary process mesenchyme),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0009846 (embryonic cloacal epithelium),UBERON:0009881 (anterior lateral plate mesoderm),UBERON:0010046 (entire pharyngeal arch associated mesenchyme),UBERON:0010286 (midbrain neural tube),UBERON:0010316 (germ layer / neural crest),UBERON:0010359 (pharyngeal arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005291 (embryonic tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data