UBERON:0000974: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0000153;;UBERON:0007811 | ||
|property_value="dubious_for_taxon" NCBITaxon:32443;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value="dubious_for_taxon" NCBITaxon:32443;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:26, 27 June 2012
| Name: | neck | ||
|---|---|---|---|
| Definition: | "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck[FMA]." [Wikipedia:Neck] | ||
| Xrefs: |
| ||
| Synonyms: | "collum" RELATED LATIN [Wikipedia:Neck] | ||
| Comments: | Usage notes: true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck. | ||
| Alt_id: | UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000475(organism subdivision) |
|---|---|
| part_of: | UBERON:0000153(anterior region of body),UBERON:0007811(craniocervical region) |
Children
| part of: | UBERON:0000341 (throat),UBERON:0005562 (thymus primordium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10061-101H7 (throat, fetal, donor1)
- 10209-103G2 (throat, adult)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10512-107D8
- 10532-107G1
- 10537-107G6
- 10544-107H4 (oral squamous cell carcinoma cell line:SAS)
- 10545-107H5 (oral squamous cell carcinoma cell line:HSC-3)
- 10550-107I1 (oral squamous cell carcinoma cell line:HO-1-u-1)
- 10588-108D3
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000974 (neck), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.76e-68 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_7238eb45a4984197e5c2b81e8c197f9c | p4@uc009bpa.1 |
| 1.76e-68 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_7238eb45a4984197e5c2b81e8c197f9c | p4@uc009bpa.1 |
| 2.4e-67 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_f5054c81f8d04712ac7c5f94fc3e47b2 | p8@uc009bpa.1 |
| 2.4e-67 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_f5054c81f8d04712ac7c5f94fc3e47b2 | p8@uc009bpa.1 |
| 1.12e-65 | FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_1adc360b7ad93bf3c3496d6ee8f219de | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 1.12e-65 | FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_1adc360b7ad93bf3c3496d6ee8f219de | p1@ENSMUST00000103288, p1@uc009bpl.1 |
| 2.12e-64 | FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_c56aeafc26793df679d156c1445a5dd7 | p@chr12:108361918..108361930, - |
| 2.12e-64 | FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_c56aeafc26793df679d156c1445a5dd7 | p@chr6:41491752..41491776, - |
| 2.12e-64 | FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_c56aeafc26793df679d156c1445a5dd7 | p@chr6:41491752..41491776, - |
| 2.12e-64 | FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_c56aeafc26793df679d156c1445a5dd7 | p@chr12:108361918..108361930, - |
| 3.88e-63 | FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_1f627209c614cb2a02e0c0ac25ef85a8 | p2@ENSMUST00000103283 |
| 3.88e-63 | FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_1f627209c614cb2a02e0c0ac25ef85a8 | p2@ENSMUST00000103283 |
| 4.88e-63 | FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_05a68fa82b4db7d5647d9e2d88c03ecb | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 4.88e-63 | FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_05a68fa82b4db7d5647d9e2d88c03ecb | p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1 |
| 7.68e-62 | FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_f3abbddf90006ee540156bb3dc94174d | p@chr9:44807434..44807445, - |
| 7.68e-62 | FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_f3abbddf90006ee540156bb3dc94174d | p@chr9:44807434..44807445, - |
| 1.0e-61 | FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_0b876d5ae978a1d5f18d8553efdf15ba | p@chr6:41494001..41494028, + |
| 1.0e-61 | FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_0b876d5ae978a1d5f18d8553efdf15ba | p@chr6:41494001..41494028, + |
| 2.4e-61 | FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_a2b89f7c8640e1a1c5cc90f6d983604a | p@chr9:44809185..44809215, - |
| 2.4e-61 | FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_a2b89f7c8640e1a1c5cc90f6d983604a | p@chr9:44809185..44809215, - |
| 2.59e-61 | FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_c52165c61634b4b96e87538b839bfb86 | p11@Prkcq |
| 2.59e-61 | FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_c52165c61634b4b96e87538b839bfb86 | p11@Prkcq |
| 8.25e-61 | FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_924a5a1b7d4e85bcb6abc9c0fbc3c6cf | p@chr14:54791784..54791787, + |
| 8.25e-61 | FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_924a5a1b7d4e85bcb6abc9c0fbc3c6cf | p@chr14:54791784..54791787, + |
| 1.47e-60 | FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_9f911d1bc9ef4dccb14e20056986447b | p1@ENSMUST00000103263 |
| 1.47e-60 | FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_9f911d1bc9ef4dccb14e20056986447b | p1@ENSMUST00000103263 |
| 2.74e-60 | FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_40ce1127a0a73a8fc08113e2babdb14e | p5@Themis |
| 2.74e-60 | FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_40ce1127a0a73a8fc08113e2babdb14e | p5@Themis |
| 3.21e-60 | FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_92aaa98abb832daee01d51522eb60167 | p5@uc009bpa.1 |
| 3.21e-60 | FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_92aaa98abb832daee01d51522eb60167 | p5@uc009bpa.1 |
| 3.77e-60 | FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_927dc2438c3609340919ed20635d2b04 | p@chr9:44793518..44793537, + |
| 3.77e-60 | FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_927dc2438c3609340919ed20635d2b04 | p@chr9:44793518..44793537, + |
| 4.87e-60 | FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_775275c7f1a630ec1aeca1a0da67416a | p@chr6:41071548..41071565, + |
| 4.87e-60 | FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_775275c7f1a630ec1aeca1a0da67416a | p@chr6:41071548..41071565, + |
| 9.63e-60 | FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_f8f2dea3881125138cb390b5360ad860 | p2@uc009bnp.1, p2@uc012eki.1 |
| 9.63e-60 | FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_f8f2dea3881125138cb390b5360ad860 | p2@uc009bnp.1, p2@uc012eki.1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:22928012..22928031,+#_3e584efc4a25f3b40e4080026a68818e | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:22928012..22928031,+#_3e584efc4a25f3b40e4080026a68818e | p3@uc001wea.3, p3@uc010ajt.2, p3@uc010aju.1 |
| 5.49e-59 | FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_50403456043528cfc3567e3582c26b8e | p5@Tcf7 |
| 5.49e-59 | FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_50403456043528cfc3567e3582c26b8e | p5@Tcf7 |
| 2.14e-58 | FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_722cf486060e799e177d33670b1a1231 | p@chr14:61328148..61328173, + |
| 2.14e-58 | FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_722cf486060e799e177d33670b1a1231 | p@chr14:61328148..61328173, + |
| 3.25e-58 | FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_736b39e00629859bb2e9a8e5380ade8a | p2@uc009bpa.1 |
| 3.25e-58 | FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_736b39e00629859bb2e9a8e5380ade8a | p2@uc009bpa.1 |
| 3.74e-58 | FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_c3726a4c1be0a01e5c9daac91a03fdaa | p2@Sh2d1a |
| 3.74e-58 | FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_c3726a4c1be0a01e5c9daac91a03fdaa | p2@Sh2d1a |
| 7.15e-58 | FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_d43cd2cad3629b3ee33466345a8c58bc | p1@uc012ekr.1 |
| 7.15e-58 | FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_d43cd2cad3629b3ee33466345a8c58bc | p1@uc012ekr.1 |
| 9.05e-58 | FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_3628521cae3e212e299eab3dce51041f | p2@1810009J06Rik |
| 9.05e-58 | FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_3628521cae3e212e299eab3dce51041f | p2@1810009J06Rik |
| 1.34e-57 | FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_90140e8f14b92d125ab4cb6bc0faa063 | p1@uc012ekk.1 |
| 1.34e-57 | FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_90140e8f14b92d125ab4cb6bc0faa063 | p1@uc012ekk.1 |
| 1.56e-57 | FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_bd1a94fb0be835a284e60307e23a1be8 | p1@ENSMUST00000103265 |
| 1.56e-57 | FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_bd1a94fb0be835a284e60307e23a1be8 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 1.56e-57 | FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_bd1a94fb0be835a284e60307e23a1be8 | p3@uc009bpo.1, p3@uc009bpp.1 |
| 1.56e-57 | FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_bd1a94fb0be835a284e60307e23a1be8 | p1@ENSMUST00000103265 |
| 3.61e-57 | FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_0e187d90351c2e8df9a74783b35d7e7e | p@chr7:133512043..133512060, - |
| 3.61e-57 | FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_0e187d90351c2e8df9a74783b35d7e7e | p@chr7:133512043..133512060, - |
| 4.31e-57 | FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_7e1aabdd7ea44ba1f086118d9b43df03 | p2@Gm5409 |
| 4.31e-57 | FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_7e1aabdd7ea44ba1f086118d9b43df03 | p2@Gm5409 |
| 6.91e-57 | FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_bf75b2a4519504d179ba22e32d52e5c9 | p4@Trat1 |
| 6.91e-57 | FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_bf75b2a4519504d179ba22e32d52e5c9 | p4@Trat1 |
| 6.93e-57 | FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_0e97750df4be94d7ff6c4252af1a1118 | p5@Trat1 |
| 6.93e-57 | FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_0e97750df4be94d7ff6c4252af1a1118 | p5@Trat1 |
| 7.43e-57 | FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_93b86e1d02b063fe89f3fcfc0c82f6c4 | p@chr6:41489240..41489252, + |
| 7.43e-57 | FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_93b86e1d02b063fe89f3fcfc0c82f6c4 | p@chr6:41489240..41489252, + |
| 1.27e-56 | FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_c94cc0cdec3bf6cabcce5ed455216c27 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 1.27e-56 | FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_c94cc0cdec3bf6cabcce5ed455216c27 | p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1 |
| 1.56e-56 | FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_8725327fbdf00ccf3c167691ce07e97a | p1@ENSMUST00000103282 |
| 1.56e-56 | FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_8725327fbdf00ccf3c167691ce07e97a | p@chr6:41494376..41494389, - |
| 1.56e-56 | FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_8725327fbdf00ccf3c167691ce07e97a | p@chr6:41494376..41494389, - |
| 1.56e-56 | FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_8725327fbdf00ccf3c167691ce07e97a | p1@ENSMUST00000103282 |
| 1.67e-56 | FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_194f96f9c6b2d5eaf9ef8011189e17f8 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 1.67e-56 | FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_194f96f9c6b2d5eaf9ef8011189e17f8 | p1@ENSMUST00000103298, p1@uc009bpy.1 |
| 1.92e-56 | FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_ef4640ad4a889834a7fd5b9cf8e6a162 | p@chr6:41492643..41492662, + |
| 1.92e-56 | FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_ef4640ad4a889834a7fd5b9cf8e6a162 | p@chr6:41492643..41492662, + |
| 2.05e-56 | FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_14f66a731043c7c722fd884cb49e26f9 | p@chr14:54794540..54794554, + |
| 2.05e-56 | FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_14f66a731043c7c722fd884cb49e26f9 | p@chr14:54794540..54794554, + |
| 2.23e-56 | FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_e9d7271ccaf52270f2a0573c91afccb3 | p@chr14:54496363..54496388, + |
| 2.23e-56 | FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_e9d7271ccaf52270f2a0573c91afccb3 | p@chr6:41491801..41491815, - |
| 2.23e-56 | FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_e9d7271ccaf52270f2a0573c91afccb3 | p@chr6:41491801..41491815, - |
| 2.23e-56 | FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_e9d7271ccaf52270f2a0573c91afccb3 | p@chr14:54496363..54496388, + |
| 2.36e-56 | FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_1c50d6c5dfb7dd8a19f13a6f2fa084a3 | p@chr6:41492605..41492621, + |
| 2.36e-56 | FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_1c50d6c5dfb7dd8a19f13a6f2fa084a3 | p@chr6:41492605..41492621, + |
| 2.54e-56 | FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_ef30aec9544f3c4b4c7e22e01df8405f | p1@Il13 |
| 2.54e-56 | FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_ef30aec9544f3c4b4c7e22e01df8405f | p1@Il13 |
| 2.88e-56 | FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_c844cb35ca488249c6509c3d076c1ed3 | p7@Lat |
| 2.88e-56 | FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_c844cb35ca488249c6509c3d076c1ed3 | p7@Lat |
| 3.14e-56 | FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_917fcd3ca94dd9991976521349bdf800 | p@chr6:41138311..41138333, + |
| 3.14e-56 | FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_917fcd3ca94dd9991976521349bdf800 | p@chr6:41138311..41138333, + |
| 4.06e-56 | FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_cfcc5a838fc25a9184568e70c3fb3c00 | p5@uc009bnp.1, p5@uc012eki.1 |
| 4.06e-56 | FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_cfcc5a838fc25a9184568e70c3fb3c00 | p5@uc009bnp.1, p5@uc012eki.1 |
| 4.76e-56 | FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_88ed89f34d1858e870eb7bf9d2574d27 | p@chr4:125978325..125978339, - |
| 4.76e-56 | FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_88ed89f34d1858e870eb7bf9d2574d27 | p8@Lat |
| 4.76e-56 | FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_88ed89f34d1858e870eb7bf9d2574d27 | p6@uc009bpa.1 |
| 4.76e-56 | FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_88ed89f34d1858e870eb7bf9d2574d27 | p6@uc009bpa.1 |
| 4.76e-56 | FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_88ed89f34d1858e870eb7bf9d2574d27 | p@chr4:125978325..125978339, - |
| 4.76e-56 | FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_88ed89f34d1858e870eb7bf9d2574d27 | p8@Lat |
| 3.9e-55 | FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_cc89b7017d2f0107b67a1d34207998af | p2@Cd6 |
| 3.9e-55 | FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_cc89b7017d2f0107b67a1d34207998af | p2@Cd6 |
