Personal tools

UBERON:0003285: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 6: Line 6:
|xref=EHDAA:1697;;EMAPA:16405
|xref=EHDAA:1697;;EMAPA:16405
|is_a=UBERON:0002050;;UBERON:0002101
|is_a=UBERON:0002050;;UBERON:0002101
|synonym="developmental tissue limb" EXACT [OBOL:automatic];;"embryo limb" EXACT [OBOL:automatic];;"limb of developmental tissue" EXACT [OBOL:automatic]
|synonym="developmental tissue limb" EXACT [OBOL:automatic];;"embryo limb" EXACT [OBOL:automatic];;"embryonic limb" EXACT [OBOL:automatic];;"limb of developmental tissue" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|alt_id=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=

Latest revision as of 13:33, 27 June 2012

Name:limb of embryo
Definition:"A limb that is part of a embryo [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA:1697

EMAPA:16405
Synonyms: "developmental tissue limb" EXACT [OBOL:automatic]
"embryo limb" EXACT [OBOL:automatic]
"embryonic limb" EXACT [OBOL:automatic]
"limb of developmental tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002050(embryonic structure),UBERON:0002101(limb)
part_of:UBERON:0000922(embryo)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003285 (limb of embryo), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b4cf486a5faa957eb3389cb66b540d19p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b4cf486a5faa957eb3389cb66b540d19p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_e3ece8e79b92a644c0d138adb7c6258ep@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_e3ece8e79b92a644c0d138adb7c6258ep@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_e3ece8e79b92a644c0d138adb7c6258ep@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_e3ece8e79b92a644c0d138adb7c6258ep@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_e3ece8e79b92a644c0d138adb7c6258ep@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_e3ece8e79b92a644c0d138adb7c6258ep@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_fbcc3b850a731929200a79492ef579dfp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_fbcc3b850a731929200a79492ef579dfp@chr6:51525810..51525817, +
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_2f6be6c2a7b8c1aae50e4cf54617e1b6p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_2f6be6c2a7b8c1aae50e4cf54617e1b6p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_6c2871f38b10863b5b75c23433668d36p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_6c2871f38b10863b5b75c23433668d36p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_6c2871f38b10863b5b75c23433668d36p@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_6c2871f38b10863b5b75c23433668d36p@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_6c2871f38b10863b5b75c23433668d36p@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_6c2871f38b10863b5b75c23433668d36p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_6c2871f38b10863b5b75c23433668d36p@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_6c2871f38b10863b5b75c23433668d36p@chr11:67063327..67063335, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_0189331b00cc616c2c0e429df23ee6afp@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_0189331b00cc616c2c0e429df23ee6afp@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_ea6ecceedfe282c3ee6fb41d1da18a3ep@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_ea6ecceedfe282c3ee6fb41d1da18a3ep@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_9d924aa5680253a3b43c195605ab6ee9p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_9d924aa5680253a3b43c195605ab6ee9p3@Asb16
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_f2895bed78c74d65ba45b1759ae8e9aap@chr7:133604286..133604297, -
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_f2895bed78c74d65ba45b1759ae8e9aap@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_1858d09a6d5c961fb20b15e75281eaa4p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_1858d09a6d5c961fb20b15e75281eaa4p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_66805c650c20a5bef54c0b4acdcf0df4p2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_66805c650c20a5bef54c0b4acdcf0df4p2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_26edf218b222cc0ebe6cb5c55ba36034p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_26edf218b222cc0ebe6cb5c55ba36034p3@Mmp9
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_7a7c7e5deff9de6ffa36006f87481165p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_7a7c7e5deff9de6ffa36006f87481165p2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_7a7c7e5deff9de6ffa36006f87481165p@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_7a7c7e5deff9de6ffa36006f87481165p@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_7416e1368494804c293fba29cf972c8dp4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_7416e1368494804c293fba29cf972c8dp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_7416e1368494804c293fba29cf972c8dp@chr11:75409652..75409664, +
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_7416e1368494804c293fba29cf972c8dp4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_03625e8efc7a2cc7619867419382a7c9p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_03625e8efc7a2cc7619867419382a7c9p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_540bd831ccd314f207e33c24736c2170p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_540bd831ccd314f207e33c24736c2170p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_540bd831ccd314f207e33c24736c2170p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_540bd831ccd314f207e33c24736c2170p@chr18:76271498..76271508, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_41e5c06aa1caf565f1f18358516b7670p@chr2:32482387..32482399, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_41e5c06aa1caf565f1f18358516b7670p@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_682141d6e145f9c713f0b072d636006bp@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_682141d6e145f9c713f0b072d636006bp@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_682141d6e145f9c713f0b072d636006bp@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_682141d6e145f9c713f0b072d636006bp@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_fa1b7aa97dafa5cc3cac7a8d207f5405p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_fa1b7aa97dafa5cc3cac7a8d207f5405p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_7e074fa574e05c9a7306911bbc9d088ap2@Myoz3
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_7e074fa574e05c9a7306911bbc9d088ap2@Myoz3
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_cae492dcca6c662c25dfd9f0b00562c4p2@Myh4
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_cae492dcca6c662c25dfd9f0b00562c4p2@Myh4
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_cc7683eb4ec4a28ef4e202776236a6b6p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_cc7683eb4ec4a28ef4e202776236a6b6p@chr1:57155729..57155740, -
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_dc8a16ef7e1a8390ece054b5afa19c13p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_dc8a16ef7e1a8390ece054b5afa19c13p1@Msmp
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_dc8a16ef7e1a8390ece054b5afa19c13p@chr11:67056544..67056589, -
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_dc8a16ef7e1a8390ece054b5afa19c13p1@Msmp
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_9918ca4dd802c7fe716263985055abc2p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_9918ca4dd802c7fe716263985055abc2p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_9918ca4dd802c7fe716263985055abc2p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_9918ca4dd802c7fe716263985055abc2p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_18fad4acf3889855669c75d6f2745d02p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_18fad4acf3889855669c75d6f2745d02p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_b9612cab3392d85ac81e6f9d9451cf0bp@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_b9612cab3392d85ac81e6f9d9451cf0bp@chr11:67069796..67069817, -
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_28436afe5906ce312797d876084ab350p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_28436afe5906ce312797d876084ab350p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_961ba1411d1581ce2ca708a5f622a9a5p1@Siglec15
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_961ba1411d1581ce2ca708a5f622a9a5p1@Siglec15
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_6ef1f8aa322af3e6e1592125379cbd29p6@Atp2a1
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_6ef1f8aa322af3e6e1592125379cbd29p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_6ae9ea469b95e846a77e43b35f42d8c7p7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_6ae9ea469b95e846a77e43b35f42d8c7p7@Atp2a1
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_cdb512a9702b64edcc823d4a778d23c7p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_cdb512a9702b64edcc823d4a778d23c7p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_cdb512a9702b64edcc823d4a778d23c7p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_cdb512a9702b64edcc823d4a778d23c7p@chr7:133592162..133592188, -
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_e9b10a5a6b5b311d895aa6b1835500cfp4@Sgca
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_e9b10a5a6b5b311d895aa6b1835500cfp4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_2bc021e112bbba0f2bc16784fcb564dcp1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_2bc021e112bbba0f2bc16784fcb564dcp1@Mepe
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_9bc332c3bb01650589758c5f88643b0dp@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_9bc332c3bb01650589758c5f88643b0dp2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_9bc332c3bb01650589758c5f88643b0dp2@Tm4sf19
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_9bc332c3bb01650589758c5f88643b0dp@chr12:81581216..81581231, +
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_79201112251ee058522330c5e2b0e717p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_79201112251ee058522330c5e2b0e717p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_79201112251ee058522330c5e2b0e717p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_79201112251ee058522330c5e2b0e717p5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_b6dbd162ebd7f5e60516208379599455p@chr2:180890942..180890956, -
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_b6dbd162ebd7f5e60516208379599455p2@Siglec15

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003285&oldid=1837688"