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Revision as of 13:44, 27 June 2012

Name:otic cup

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003069(otic placode)



Children

develops from:UBERON:0003051 (ear vesicle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009123 (otic cup), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_b1910012f17566919440def95cc5be02p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_b1910012f17566919440def95cc5be02p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_b1910012f17566919440def95cc5be02p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_b1910012f17566919440def95cc5be02p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_b1910012f17566919440def95cc5be02p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_b1910012f17566919440def95cc5be02p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_b1910012f17566919440def95cc5be02p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_b1910012f17566919440def95cc5be02p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_b1910012f17566919440def95cc5be02p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_b1910012f17566919440def95cc5be02p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_b1910012f17566919440def95cc5be02p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_b1910012f17566919440def95cc5be02p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_b1910012f17566919440def95cc5be02p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_b1910012f17566919440def95cc5be02p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_b1910012f17566919440def95cc5be02p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_b1910012f17566919440def95cc5be02p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_b1910012f17566919440def95cc5be02p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_b1910012f17566919440def95cc5be02p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_b1910012f17566919440def95cc5be02p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_b1910012f17566919440def95cc5be02p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_b1910012f17566919440def95cc5be02p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_b1910012f17566919440def95cc5be02p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_b1910012f17566919440def95cc5be02p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_b1910012f17566919440def95cc5be02p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_b1910012f17566919440def95cc5be02p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_b1910012f17566919440def95cc5be02p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_b1910012f17566919440def95cc5be02p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_b1910012f17566919440def95cc5be02p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_b1910012f17566919440def95cc5be02p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_b1910012f17566919440def95cc5be02p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_b1910012f17566919440def95cc5be02p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_b1910012f17566919440def95cc5be02p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_b1910012f17566919440def95cc5be02p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_b1910012f17566919440def95cc5be02p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_b1910012f17566919440def95cc5be02p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_b1910012f17566919440def95cc5be02p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_b1910012f17566919440def95cc5be02p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_b1910012f17566919440def95cc5be02p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_b1910012f17566919440def95cc5be02p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_b1910012f17566919440def95cc5be02p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_b1910012f17566919440def95cc5be02p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_b1910012f17566919440def95cc5be02p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_b1910012f17566919440def95cc5be02p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_b1910012f17566919440def95cc5be02p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_b1910012f17566919440def95cc5be02p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_b1910012f17566919440def95cc5be02p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_b1910012f17566919440def95cc5be02p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_b1910012f17566919440def95cc5be02p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_b1910012f17566919440def95cc5be02p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_b1910012f17566919440def95cc5be02p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_b1910012f17566919440def95cc5be02p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_b1910012f17566919440def95cc5be02p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_b1910012f17566919440def95cc5be02p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_b1910012f17566919440def95cc5be02p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_b1910012f17566919440def95cc5be02p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_b1910012f17566919440def95cc5be02p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_b1910012f17566919440def95cc5be02p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_b1910012f17566919440def95cc5be02p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_b1910012f17566919440def95cc5be02p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_b1910012f17566919440def95cc5be02p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_b1910012f17566919440def95cc5be02p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_b1910012f17566919440def95cc5be02p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_b1910012f17566919440def95cc5be02p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_b1910012f17566919440def95cc5be02p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_b1910012f17566919440def95cc5be02p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_b1910012f17566919440def95cc5be02p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_b1910012f17566919440def95cc5be02p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_b1910012f17566919440def95cc5be02p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_b1910012f17566919440def95cc5be02p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_b1910012f17566919440def95cc5be02p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_b1910012f17566919440def95cc5be02p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_b1910012f17566919440def95cc5be02p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_b1910012f17566919440def95cc5be02p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_b1910012f17566919440def95cc5be02p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_b1910012f17566919440def95cc5be02p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_b1910012f17566919440def95cc5be02p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_b1910012f17566919440def95cc5be02p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_b1910012f17566919440def95cc5be02p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_b1910012f17566919440def95cc5be02p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_b1910012f17566919440def95cc5be02p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_b1910012f17566919440def95cc5be02p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_b1910012f17566919440def95cc5be02p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_b1910012f17566919440def95cc5be02p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_b1910012f17566919440def95cc5be02p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_b1910012f17566919440def95cc5be02p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_b1910012f17566919440def95cc5be02p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_b1910012f17566919440def95cc5be02p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_b1910012f17566919440def95cc5be02p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_b1910012f17566919440def95cc5be02p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_b1910012f17566919440def95cc5be02p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_b1910012f17566919440def95cc5be02p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_b1910012f17566919440def95cc5be02p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_b1910012f17566919440def95cc5be02p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_b1910012f17566919440def95cc5be02p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_b1910012f17566919440def95cc5be02p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_b1910012f17566919440def95cc5be02p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_b1910012f17566919440def95cc5be02p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_b1910012f17566919440def95cc5be02p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_b1910012f17566919440def95cc5be02p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_b1910012f17566919440def95cc5be02p5@BC030867

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