UBERON:0003051
From FANTOM5_SSTAR
| Name: | ear vesicle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory vesicle" RELATED [BTO:0002661] "otic vesicle" EXACT [] "otocyst" RELATED [] "OV" RELATED [] | ||
| Alt_id: |
UBERON:0004373 UBERON:XAO_0000006-ZFA_0000051 | ||
| Subset: | vertebrate_core |
Gray40.png]
200px-Gray40.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium) |
|---|---|
| develops_from: | UBERON:0009123(otic cup) |
| part_of: | UBERON:0000922(embryo),UBERON:0000924(ectoderm) |
Children
| develops from: | UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex) |
|---|---|
| part of: | UBERON:0005641 (otocyst epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_75fc3970308be340c9f348f4c3017776 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251606..113251613, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_75fc3970308be340c9f348f4c3017776 | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_75fc3970308be340c9f348f4c3017776 | p@chr5:147854240..147854249, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_75fc3970308be340c9f348f4c3017776 | p3@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_75fc3970308be340c9f348f4c3017776 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_75fc3970308be340c9f348f4c3017776 | p@chr7:29733825..29733837, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_75fc3970308be340c9f348f4c3017776 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_75fc3970308be340c9f348f4c3017776 | p10@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_75fc3970308be340c9f348f4c3017776 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_75fc3970308be340c9f348f4c3017776 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_75fc3970308be340c9f348f4c3017776 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_75fc3970308be340c9f348f4c3017776 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_75fc3970308be340c9f348f4c3017776 | p3@Epyc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_75fc3970308be340c9f348f4c3017776 | p@chr16:93971325..93971337, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_75fc3970308be340c9f348f4c3017776 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_75fc3970308be340c9f348f4c3017776 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_75fc3970308be340c9f348f4c3017776 | p3@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_75fc3970308be340c9f348f4c3017776 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_75fc3970308be340c9f348f4c3017776 | p7@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_75fc3970308be340c9f348f4c3017776 | p6@Jag1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_75fc3970308be340c9f348f4c3017776 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_75fc3970308be340c9f348f4c3017776 | p@chr15:58022966..58022995, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_75fc3970308be340c9f348f4c3017776 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_75fc3970308be340c9f348f4c3017776 | p5@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_75fc3970308be340c9f348f4c3017776 | p@chrX:154140781..154140788, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_75fc3970308be340c9f348f4c3017776 | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_75fc3970308be340c9f348f4c3017776 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:41495920..41495928, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_75fc3970308be340c9f348f4c3017776 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_75fc3970308be340c9f348f4c3017776 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_75fc3970308be340c9f348f4c3017776 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_75fc3970308be340c9f348f4c3017776 | p4@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_75fc3970308be340c9f348f4c3017776 | p5@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_75fc3970308be340c9f348f4c3017776 | p2@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_75fc3970308be340c9f348f4c3017776 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_75fc3970308be340c9f348f4c3017776 | p@chr8:13425469..13425503, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_75fc3970308be340c9f348f4c3017776 | p@chr19:10536767..10536777, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_75fc3970308be340c9f348f4c3017776 | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_75fc3970308be340c9f348f4c3017776 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_75fc3970308be340c9f348f4c3017776 | p2@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:89215333..89215341, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_75fc3970308be340c9f348f4c3017776 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_75fc3970308be340c9f348f4c3017776 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_75fc3970308be340c9f348f4c3017776 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_75fc3970308be340c9f348f4c3017776 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_75fc3970308be340c9f348f4c3017776 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_75fc3970308be340c9f348f4c3017776 | p1@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_75fc3970308be340c9f348f4c3017776 | p10@Otof |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:20649897..20649907, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
