UBERON:0003051
From FANTOM5_SSTAR
| Name: | ear vesicle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory vesicle" RELATED [BTO:0002661] "otic vesicle" EXACT [] "otocyst" RELATED [] "OV" RELATED [] | ||
| Alt_id: |
UBERON:0004373 UBERON:XAO_0000006-ZFA_0000051 | ||
| Subset: | vertebrate_core |
Gray40.png]
200px-Gray40.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium) |
|---|---|
| develops_from: | UBERON:0009123(otic cup) |
| part_of: | UBERON:0000922(embryo),UBERON:0000924(ectoderm) |
Children
| develops from: | UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex) |
|---|---|
| part of: | UBERON:0005641 (otocyst epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_75fc3970308be340c9f348f4c3017776 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_75fc3970308be340c9f348f4c3017776 | p3@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_75fc3970308be340c9f348f4c3017776 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_75fc3970308be340c9f348f4c3017776 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_75fc3970308be340c9f348f4c3017776 | p1@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_75fc3970308be340c9f348f4c3017776 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_75fc3970308be340c9f348f4c3017776 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_75fc3970308be340c9f348f4c3017776 | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776 | p2@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_75fc3970308be340c9f348f4c3017776 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_75fc3970308be340c9f348f4c3017776 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_75fc3970308be340c9f348f4c3017776 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_75fc3970308be340c9f348f4c3017776 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776 | p2@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_75fc3970308be340c9f348f4c3017776 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:85334335..85334353, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251614..113251623, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_75fc3970308be340c9f348f4c3017776 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_75fc3970308be340c9f348f4c3017776 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:144115382..144115389, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_75fc3970308be340c9f348f4c3017776 | p4@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_75fc3970308be340c9f348f4c3017776 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_75fc3970308be340c9f348f4c3017776 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_75fc3970308be340c9f348f4c3017776 | p1@Dytn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_75fc3970308be340c9f348f4c3017776 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_75fc3970308be340c9f348f4c3017776 | p3@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_75fc3970308be340c9f348f4c3017776 | p1@Otog |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_75fc3970308be340c9f348f4c3017776 | p2@Strc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_75fc3970308be340c9f348f4c3017776 | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_75fc3970308be340c9f348f4c3017776 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_75fc3970308be340c9f348f4c3017776 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_75fc3970308be340c9f348f4c3017776 | p1@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_75fc3970308be340c9f348f4c3017776 | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_75fc3970308be340c9f348f4c3017776 | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_75fc3970308be340c9f348f4c3017776 | p9@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_75fc3970308be340c9f348f4c3017776 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_75fc3970308be340c9f348f4c3017776 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_75fc3970308be340c9f348f4c3017776 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_75fc3970308be340c9f348f4c3017776 | p3@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_75fc3970308be340c9f348f4c3017776 | p6@Jag1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_75fc3970308be340c9f348f4c3017776 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_75fc3970308be340c9f348f4c3017776 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:109905468..109905474, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_75fc3970308be340c9f348f4c3017776 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_75fc3970308be340c9f348f4c3017776 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:130461150..130461185, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_75fc3970308be340c9f348f4c3017776 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_75fc3970308be340c9f348f4c3017776 | p1@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_75fc3970308be340c9f348f4c3017776 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:56208792..56208814, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_75fc3970308be340c9f348f4c3017776 | p1@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_75fc3970308be340c9f348f4c3017776 | p1@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_75fc3970308be340c9f348f4c3017776 | p1@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206745..42206774, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
