Personal tools

UBERON:0003051

From FANTOM5_SSTAR

Jump to: navigation, search

Name:ear vesicle
Namespace:FANTOM
Definition:"The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
Xrefs:
links:

AAO:0011080
BTO:0002661
EHDAA2:0001342
EMAPA:16669
[ Gray40.png Gray40.png]
[ 200px-Gray40.png 200px-Gray40.png]
ncithesaurus:Otic_Vesicle
SCTID:308792006
TAO:0000051
VHOG:0001148
XAO:0000006

ZFA:0000051
Synonyms: "auditory vesicle" RELATED [BTO:0002661]
"otic vesicle" EXACT []
"otocyst" RELATED []
"OV" RELATED []
Alt_id: UBERON:0004373
UBERON:XAO_0000006-ZFA_0000051
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0009123(otic cup)
part_of:UBERON:0000922(embryo),UBERON:0000924(ectoderm)



Children

develops from:UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex)
part of:UBERON:0005641 (otocyst epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_75fc3970308be340c9f348f4c3017776p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_75fc3970308be340c9f348f4c3017776p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_75fc3970308be340c9f348f4c3017776p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_75fc3970308be340c9f348f4c3017776p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_75fc3970308be340c9f348f4c3017776p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_75fc3970308be340c9f348f4c3017776p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_75fc3970308be340c9f348f4c3017776p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_75fc3970308be340c9f348f4c3017776p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_75fc3970308be340c9f348f4c3017776p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_75fc3970308be340c9f348f4c3017776p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_75fc3970308be340c9f348f4c3017776p6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_75fc3970308be340c9f348f4c3017776p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_75fc3970308be340c9f348f4c3017776p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_75fc3970308be340c9f348f4c3017776p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_75fc3970308be340c9f348f4c3017776p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_75fc3970308be340c9f348f4c3017776p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_75fc3970308be340c9f348f4c3017776p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_75fc3970308be340c9f348f4c3017776p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_75fc3970308be340c9f348f4c3017776p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_75fc3970308be340c9f348f4c3017776p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_75fc3970308be340c9f348f4c3017776p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_75fc3970308be340c9f348f4c3017776p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_75fc3970308be340c9f348f4c3017776p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_75fc3970308be340c9f348f4c3017776p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_75fc3970308be340c9f348f4c3017776p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_75fc3970308be340c9f348f4c3017776p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_75fc3970308be340c9f348f4c3017776p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_75fc3970308be340c9f348f4c3017776p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_75fc3970308be340c9f348f4c3017776p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_75fc3970308be340c9f348f4c3017776p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_75fc3970308be340c9f348f4c3017776p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_75fc3970308be340c9f348f4c3017776p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_75fc3970308be340c9f348f4c3017776p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_75fc3970308be340c9f348f4c3017776p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_75fc3970308be340c9f348f4c3017776p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_75fc3970308be340c9f348f4c3017776p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_75fc3970308be340c9f348f4c3017776p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_75fc3970308be340c9f348f4c3017776p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_75fc3970308be340c9f348f4c3017776p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_75fc3970308be340c9f348f4c3017776p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_75fc3970308be340c9f348f4c3017776p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_75fc3970308be340c9f348f4c3017776p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_75fc3970308be340c9f348f4c3017776p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_75fc3970308be340c9f348f4c3017776p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_75fc3970308be340c9f348f4c3017776p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_75fc3970308be340c9f348f4c3017776p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_75fc3970308be340c9f348f4c3017776p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_75fc3970308be340c9f348f4c3017776p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_75fc3970308be340c9f348f4c3017776p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_75fc3970308be340c9f348f4c3017776p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_75fc3970308be340c9f348f4c3017776p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_75fc3970308be340c9f348f4c3017776p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_75fc3970308be340c9f348f4c3017776p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_75fc3970308be340c9f348f4c3017776p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_75fc3970308be340c9f348f4c3017776p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_75fc3970308be340c9f348f4c3017776p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_75fc3970308be340c9f348f4c3017776p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_75fc3970308be340c9f348f4c3017776p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_75fc3970308be340c9f348f4c3017776p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_75fc3970308be340c9f348f4c3017776p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_75fc3970308be340c9f348f4c3017776p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_75fc3970308be340c9f348f4c3017776p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_75fc3970308be340c9f348f4c3017776p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_75fc3970308be340c9f348f4c3017776p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_75fc3970308be340c9f348f4c3017776p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_75fc3970308be340c9f348f4c3017776p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_75fc3970308be340c9f348f4c3017776p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_75fc3970308be340c9f348f4c3017776p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_75fc3970308be340c9f348f4c3017776p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_75fc3970308be340c9f348f4c3017776p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_75fc3970308be340c9f348f4c3017776p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_75fc3970308be340c9f348f4c3017776p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_75fc3970308be340c9f348f4c3017776p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_75fc3970308be340c9f348f4c3017776p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_75fc3970308be340c9f348f4c3017776p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_75fc3970308be340c9f348f4c3017776p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_75fc3970308be340c9f348f4c3017776p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_75fc3970308be340c9f348f4c3017776p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_75fc3970308be340c9f348f4c3017776p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776p7@A730017C20Rik










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.