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UBERON:0003051

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Name:ear vesicle
Namespace:FANTOM
Definition:"The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator]
Xrefs:
links:

AAO:0011080
BTO:0002661
EHDAA2:0001342
EMAPA:16669
[ Gray40.png Gray40.png]
[ 200px-Gray40.png 200px-Gray40.png]
ncithesaurus:Otic_Vesicle
SCTID:308792006
TAO:0000051
VHOG:0001148
XAO:0000006

ZFA:0000051
Synonyms: "auditory vesicle" RELATED [BTO:0002661]
"otic vesicle" EXACT []
"otocyst" RELATED []
"OV" RELATED []
Alt_id: UBERON:0004373
UBERON:XAO_0000006-ZFA_0000051
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium)
develops_from:UBERON:0009123(otic cup)
part_of:UBERON:0000922(embryo),UBERON:0000924(ectoderm)



Children

develops from:UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex)
part of:UBERON:0005641 (otocyst epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_75fc3970308be340c9f348f4c3017776p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_75fc3970308be340c9f348f4c3017776p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_75fc3970308be340c9f348f4c3017776p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_75fc3970308be340c9f348f4c3017776p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_75fc3970308be340c9f348f4c3017776p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_75fc3970308be340c9f348f4c3017776p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_75fc3970308be340c9f348f4c3017776p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_75fc3970308be340c9f348f4c3017776p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_75fc3970308be340c9f348f4c3017776p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_75fc3970308be340c9f348f4c3017776p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_75fc3970308be340c9f348f4c3017776p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_75fc3970308be340c9f348f4c3017776p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_75fc3970308be340c9f348f4c3017776p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_75fc3970308be340c9f348f4c3017776p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_75fc3970308be340c9f348f4c3017776p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_75fc3970308be340c9f348f4c3017776p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_75fc3970308be340c9f348f4c3017776p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_75fc3970308be340c9f348f4c3017776p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_75fc3970308be340c9f348f4c3017776p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_75fc3970308be340c9f348f4c3017776p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_75fc3970308be340c9f348f4c3017776p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_75fc3970308be340c9f348f4c3017776p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_75fc3970308be340c9f348f4c3017776p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_75fc3970308be340c9f348f4c3017776p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_75fc3970308be340c9f348f4c3017776p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_75fc3970308be340c9f348f4c3017776p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_75fc3970308be340c9f348f4c3017776p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_75fc3970308be340c9f348f4c3017776p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_75fc3970308be340c9f348f4c3017776p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_75fc3970308be340c9f348f4c3017776p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_75fc3970308be340c9f348f4c3017776p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_75fc3970308be340c9f348f4c3017776p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_75fc3970308be340c9f348f4c3017776p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_75fc3970308be340c9f348f4c3017776p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_75fc3970308be340c9f348f4c3017776p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_75fc3970308be340c9f348f4c3017776p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_75fc3970308be340c9f348f4c3017776p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_75fc3970308be340c9f348f4c3017776p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_75fc3970308be340c9f348f4c3017776p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_75fc3970308be340c9f348f4c3017776p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_75fc3970308be340c9f348f4c3017776p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_75fc3970308be340c9f348f4c3017776p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_75fc3970308be340c9f348f4c3017776p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_75fc3970308be340c9f348f4c3017776p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_75fc3970308be340c9f348f4c3017776p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_75fc3970308be340c9f348f4c3017776p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_75fc3970308be340c9f348f4c3017776p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_75fc3970308be340c9f348f4c3017776p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_75fc3970308be340c9f348f4c3017776p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_75fc3970308be340c9f348f4c3017776p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_75fc3970308be340c9f348f4c3017776p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_75fc3970308be340c9f348f4c3017776p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_75fc3970308be340c9f348f4c3017776p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_75fc3970308be340c9f348f4c3017776p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_75fc3970308be340c9f348f4c3017776p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_75fc3970308be340c9f348f4c3017776p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_75fc3970308be340c9f348f4c3017776p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_75fc3970308be340c9f348f4c3017776p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_75fc3970308be340c9f348f4c3017776p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_75fc3970308be340c9f348f4c3017776p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_75fc3970308be340c9f348f4c3017776p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_75fc3970308be340c9f348f4c3017776p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_75fc3970308be340c9f348f4c3017776p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_75fc3970308be340c9f348f4c3017776p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_75fc3970308be340c9f348f4c3017776p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_75fc3970308be340c9f348f4c3017776p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_75fc3970308be340c9f348f4c3017776p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_75fc3970308be340c9f348f4c3017776p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_75fc3970308be340c9f348f4c3017776p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_75fc3970308be340c9f348f4c3017776p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_75fc3970308be340c9f348f4c3017776p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_75fc3970308be340c9f348f4c3017776p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_75fc3970308be340c9f348f4c3017776p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_75fc3970308be340c9f348f4c3017776p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_75fc3970308be340c9f348f4c3017776p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_75fc3970308be340c9f348f4c3017776p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_75fc3970308be340c9f348f4c3017776p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_75fc3970308be340c9f348f4c3017776p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_75fc3970308be340c9f348f4c3017776p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_75fc3970308be340c9f348f4c3017776p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_75fc3970308be340c9f348f4c3017776p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_75fc3970308be340c9f348f4c3017776p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_75fc3970308be340c9f348f4c3017776p2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_75fc3970308be340c9f348f4c3017776p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_75fc3970308be340c9f348f4c3017776p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_75fc3970308be340c9f348f4c3017776p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_75fc3970308be340c9f348f4c3017776p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_75fc3970308be340c9f348f4c3017776p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_75fc3970308be340c9f348f4c3017776p3@Kncn










Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.