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MacroAPE 1083:CRX Retina-Crx-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;315;522;948;345!2;281;1125;132;592!3;47;9;2;2072!4;1896;6;49;179!5;2077;23;13;17!6;2;13;390;1725!7;2;2083;34;11!8;26;1603;28;473 |macroape_...")
 
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0.804437!10827-111C8;0.826441!10789-110H6;0.606964!10828-111C9;0.759463!10788-110H5;0.485755!10792-110H9;0.287162!10765-110E9;0.974944!10829-111D1;0.391744!10830-111D2;0.936761!10831-111D3;0.542662!10832-111D4;0.66983!10833-111D5;0.604717!10764-110E8;0.375215!10770-110F5;0.58697!10399-106A3;0.723645!10400-106A4;0.458548!10405-106A9;0.370652!10834-111D6;0.558746!10835-111D7;0.952931!10836-111D8;0.712538!10837-111D9;0.134424!10699-109G6;0.406866!10802-111A1;0.188385!10796-110I4;0.138195!10010-101C1;0.183232!10810-111A9;0.521671!10421-106C7;0.0810871!10708-109H6;0.829418!12235-129G3;0.741976!12236-129G4;0.958213!12237-129G5;0.674864!10167-103B5;0.672342!10151-102I7;0.016664!10428-106D5;0.00813564!10795-110I3;0.0994374!10805-111A4;0.638275!10052-101G7;0.382101!10189-103D9;0.994045!10589-108D4;0.850491!10425-106D2;0.192688!10427-106D4;0.567767!10702-109G9;0.92092!10432-106D9;0.0197652!10496-107C1;0.695647!10718-109I7;0.762305!10011-101C2;0.186586!10053-101G8;0.451156!10686-109F2;0.577455!10084-102B3;0.00785292!10012-101C3;0.0192328!10085-102B4;0.0142526!10482-107A5;0.000514435!10419-106C5;0.352333!10080-102A8;0.374304!10760-110E4;0.908558!10709-109H7;0.91703!10710-109H8;0.818748!10703-109H1;0.938248!10719-109I8;0.140822!10642-109A3;0.384396!10177-103C6;0.897313!10164-103B2;0.0191039!10173-103C2;0.00148327!10166-103B4;0.0290793!10083-102B2;0.03641!10188-103D8;0.0292667!10552-107I3;0.00614016!10553-107I4;0.693396!10013-101C4;0.727262!10536-107G5;0.89427!10618-108G6;0.903064!10423-106C9;0.0720558!10785-110H2;0.962594!12238-129G6;0.281529!12239-129G7;0.723457!12240-129G8;0.521169!10416-106C2;0.838233!10801-110I9;0.919517!10766-110F1;0.983371!10824-111C5;0.341432!10825-111C6;0.349265!10826-111C7;0.375844!10454-106G4;0.430395!10409-106B4;0.252551!10638-108I8;0.957223!10636-108I6;0.240903!10513-107D9;0.32486!10420-106C6;0.107137!10082-102B1;0.265553!10014-101C5;0.451773!10070-101I7;0.749425!10452-106G2;0.626208!10453-106G3;0.208697!10449-106F8;0.340722!10042-101F6;0.355404!10069-101I6;0.0214065!10193-103E4;0.410201!10631-108I1;0.0179716!10438-106E6;0.940631!10488-107B2;0.706117!10196-103E7;0.753286!10071-101I8;0.956405!10071-101I8;0.159392!10041-101F5;0.00218107!10451-106G1;0.846182!10450-106F9;0.87132!10604-108F1;0.684451!10605-108F2;0.525623!10606-108F3;0.624174!10603-108E9;0.609704!10497-107C2;0.965221!10448-106F7;0.614501!10643-109A4;0.923808!10426-106D3;0.557703!10431-106D8;0.512902!10197-103E8;0.167995!10443-106F2;0.982638!10815-111B5;0.681388!10816-111B6;0.13745!10817-111B7;0.0651151!10015-101C6;0.218618!10410-106B5;0.624205!10054-101G9;0.583934!10758-110E2;1.20777e-07!10711-109H9;0.0745369!10040-101F4;0.648455!10470-106I2;0.00715927!10415-106C1;0.576455!10198-103E9;0.521693!10614-108G2;0.841294!10612-108F9;0.756219!10549-107H9;0.178178!10615-108G3;0.0354393!10487-107B1;0.381621!10433-106E1;0.676388!10688-109F4;0.507445!10444-106F3;0.180235!10444-106F3;0.526134!10485-107A8;0.412283!10413-106B8;0.0921775!10175-103C4;0.000496432!10161-103A8;0.0153453!12131-128D7;0.083479!10624-108H3;0.262078!10712-109I1;0.113052!10205-103F7;0.794579!10206-103F8;0.416453!10207-103F9;0.189757!10050-101G5;0.766831!10051-101G6;0.321587!10016-101C7;0.11452!10046-101G1;0.100728!10778-110G4;0.0830242!10633-108I3;0.0686247!10818-111B8;0.0106719!10819-111B9;0.622326!10820-111C1;0.716433!10484-107A7;0.606475!10808-111A7;0.690885!10169-103B7;0.790089!10153-102I9;0.0114692!13425-144D5;0.00988387!13433-144E4;0.102923!13437-144E8;0.148688!11904-125F5;0.139044!11905-125F6;0.254079!10039-101F3;0.199303!10791-110H8;0.00284036!10017-101C8;0.665332!10045-101F9;0.83803!10509-107D5;0.822932!10839-111E2;0.290069!10692-109F8;0.699045!10079-102A7;0.953333!10078-102A6;0.215246!10721-110A1;0.303957!10569-108B2;0.284407!10570-108B3;0.368193!10571-108B4;0.479874!10647-109A8;0.162242!10752-110D5;0.420079!10782-110G8;0.695674!10726-110A6;0.00271285!10018-101C9;0.904141!10086-102B5;0.621119!10182-103D2;0.320871!10165-103B3;0.0127034!10499-107C4;0.028746!10408-106B3;0.683591!10019-101D1;0.451837!10068-101I5;0.383023!10075-102A3;0.711312!10077-102A5;0.426557!10727-110A7;0.548688!10775-110G1;0.167854!10412-106B7;0.906674!12231-129F8;0.44911!12232-129F9;0.843652!12233-129G1;0.678696!12234-129G2;0.672802!10414-106B9;0.491137!10170-103B8;0.0350709!10183-103D3;0.0337719!10150-102I6;0.0354905!10174-103C3;0.0142408!10155-103A2;0.00983619!10038-101F2;0.0248836!10838-111E1;0.0199587!10759-110E3;1.07704e-05!10514-107E1;0.794267!10465-106H6;0.455881!10691-109F7;0.993508!10843-111E6;0.0721984!10844-111E7;0.0732425!11747-123G1;0.0220614!11748-123G2;6.17145e-05!11749-123G3;0.00816057!11750-123G4;0.00734482!11751-123G5;0.00369876!11840-124H4;0.00311843!11752-123G6;0.00603894!11753-123G7;0.0935378!11754-123G8;0.0051786!11755-123G9;0.00486797!11756-123H1;0.0157237!11833-124G6;0.148162!11760-123H5;0.18674!11836-124G9;0.015735!11758-123H3;0.134877!11835-124G8;0.175614!11762-123H7;0.0830686!11838-124H2;0.0585349!11757-123H2;0.168795!11759-123H4;0.180895!11761-123H6;0.0191037!11842-124H6;0.0581556!11837-124H1;0.106181!10568-108B1;0.0340606!13230-141I8;0.224784!13231-141I9;0.00988383!10696-109G3;0.0621291!10493-107B7;0.601348!10494-107B8;0.880615!10850-111F4;0.693125!10851-111F5;0.532528!10852-111F6;0.346554!10853-111F7;0.50073!10854-111F8;0.3253!10855-111F9;0.411124!10856-111G1;0.202029!10847-111F1;0.10131!10846-111E9;0.450524!10848-111F2;0.0875345!10845-111E8;0.646167!10857-111G2;0.940817!10858-111G3;0.442489!10156-103A3;0.216306!11901-125F2;0.0193789!11902-125F3;0.905064!11903-125F4;0.872562!10689-109F5;0.814404!10648-109A9;0.0359166!10784-110H1;0.303094!10744-110C6;0.618022!10772-110F7;0.798467!10474-106I6;0.838489!10600-108E6;0.778239!10684-109E9;0.102967!12226-129F3;0.0375366!12227-129F4;0.411765!10508-107D4;0.460001!10539-107G8;0.0251241!10607-108F4;0.0647365!10555-107I6;0.314705!10774-110F9;0.105611!10637-108I7;0.420465!10663-109C6;0.315711!10728-110A8;0.717654!10729-110A9;0.262533!10430-106D7;0.125995!10730-110B1;0.716272!10813-111B3;0.723892!10812-111B2;0.0215726!10037-101F1;0.0467933!10172-103C1;0.00375012!10163-103B1;0.0499298!10076-102A4;0.0183349!10073-102A1;0.01153!10036-101E9;0.00220938!10195-103E6;0.000887524!10277-104E7;0.0125182!10434-106E2;0.113555!10550-107I1;0.890433!10545-107H5;0.894221!10544-107H4;0.455343!10704-109H2;0.355223!10510-107D6;0.0403549!10558-107I9;0.922502!10020-101D2;0.246125!10732-110B3;0.523987!10049-101G4;0.020576!10698-109G5;0.293696!10437-106E5;0.208047!10417-106C3;0.192596!10035-101E8;0.933603!10171-103B9;0.0035859!10157-103A4;0.0415345!10034-101E7;0.0152714!10072-101I9;0.00472927!10199-103F1;0.00374093!10200-103F2;0.566!10697-109G4;0.698986!10723-110A3;0.795403!10179-103C8;0.77115!10160-103A7;1.11408e-07!10180-103C9;1.24193e-06!10162-103A9;0.000851218!10021-101D3;0.000299793!10840-111E3;0.886226!10706-109H4;0.583779!10033-101E6;0.269247!10032-101E5;0.00813757!10490-107B4;0.0023568!10439-106E7;0.456453!10022-101D4;0.5513!10176-103C5;0.813972!10469-106I1;0.00757439!10067-101I4;0.0903221!10411-106B6;0.114136!10471-106I3;0.331849!10030-101E3;0.452258!10475-106I7;3.75812e-09!10787-110H4;0.00228664!10477-106I9;0.461101!10695-109G2;0.170479!11771-123I7;0.232534!11772-123I8;0.959128!11773-123I9;0.555369!10093-102C3;0.824733!10442-106F1;0.398015!10442-106F1;0.316717!10201-103F3;0.29814!10639-108I9;0.544798!11843-124H7;0.46053!11841-124H5;0.113933!10693-109F9;0.475324!10436-106E4;0.73814!10483-107A6;0.272803!10282-104F3;0.154196!10023-101D5;0.520509!10066-101I3;0.886588!10065-101I2;0.45108!10800-110I8;0.661567!10610-108F7;0.232495!10841-111E4;0.34531!10541-107H1;0.212483!10842-111E5;0.062327!10562-108A4;0.000601315!10024-101D6;0.876995!10064-101I1;0.536031!10609-108F6;0.109218!10048-101G3;0.362893!10781-110G7;0.661601!10181-103D1;0.0718568!10159-103A6;0.128798!10056-101H2;0.239973!10737-110B8;0.185851!10025-101D7;0.044832!10044-101F8;0.0307957!10424-106D1;0.698213!10463-106H4;0.98118!10616-108G4;0.211321!10486-107A9;0.641349!10062-101H8;0.603639!10202-103F4;0.565261!10158-103A5;0.36706!10441-106E9;0.239822!10031-101E4;0.566821!10063-101H9;0.00126185!10063-101H9;0.00246842!11763-123H8;0.15733!11765-123I1;0.0674325!11768-123I4;0.17248!10807-111A6;0.0890738!10790-110H7;0.125113!10798-110I6;0.139586!10786-110H3;0.00125402!10591-108D6;0.192599!10593-108D8;0.185891!10590-108D5;0.338611!10026-101D8;0.421599!10096-102C6;0.893523!10168-103B6;0.292209!10154-103A1;0.0467316!10209-103G2;0.0560296!10061-101H7;0.532661!10027-101D9;0.265318!10043-101F7;0.940733!10783-110G9;0.71446!10028-101E1;0.489656!10060-101H6;0.616699!10203-103F5;0.983455!10059-101H5;0.648688!10047-101G2;0.290232!10029-101E2;0.537217!10058-101H4;0.862273!10418-106C4;0.390511!10492-107B6;0.206426!10694-109G1;0.444666!10797-110I5;0.510638!10057-101H3;0.265229!10100-102D1;0.515657!10055-101H1;0.985796!10204-103F6;0.592883!10191-103E2;0.896115!10563-108A5;0.908411
|name=CRX_Retina-Crx-ChIP-Seq/Homer
|name=CRX_Retina-Crx-ChIP-Seq/Homer
|tomtom_result=Gsc#MA0190.1;-2;1.92858e-06;0.000918005;0.000611848;6;GCTAATCC;TAATCC;+!bcd#MA0212.1;-2;1.92858e-06;0.000918005;0.000611848;6;GCTAATCC;TAATCC;+!oc#MA0234.1;-2;1.92858e-06;0.000918005;0.000611848;6;GCTAATCC;TAATCC;+!Ptx1#MA0201.1;-1;3.00254e-05;0.0142921;0.00714423;7;GCTAATCC;TTAATCC;+!Ubx#MA0094.1;-2;0.00380719;1.81222;0.724706;4;GCTAATCC;TAAT;+!GLN3#MA0307.1;-2;0.00951521;4.52924;0.999747;5;GCTAATCC;TTATC;-!Pdx1#MA0132.1;-1;0.0133586;6.35869;0.999747;6;GCTAATCC;CTAATT;+!RGT1#MA0367.1;1;0.0143902;6.84975;0.999747;8;GCTAATCC;AATTTTTCCGG;+
}}
}}

Latest revision as of 12:21, 7 September 2012

Full Name: CRX_Retina-Crx-ChIP-Seq/Homer

Motif matrix
POACGT
1315522948345
22811125132592
347922072
41896649179
52077231317
62133901725
7220833411
826160328473

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Gsc#MA0190.1-21.92858e-060.0009180050.0006118486GCTAATCCTAATCC+
bcd#MA0212.1-21.92858e-060.0009180050.0006118486GCTAATCCTAATCC+
oc#MA0234.1-21.92858e-060.0009180050.0006118486GCTAATCCTAATCC+
Ptx1#MA0201.1-13.00254e-050.01429210.007144237GCTAATCCTTAATCC+
Ubx#MA0094.1-20.003807191.812220.7247064GCTAATCCTAAT+
GLN3#MA0307.1-20.009515214.529240.9997475GCTAATCCTTATC-
Pdx1#MA0132.1-10.01335866.358690.9997476GCTAATCCCTAATT+
RGT1#MA0367.110.01439026.849750.9997478GCTAATCCAATTTTTCCGG+
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