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MacroAPE 1083:Motif561: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;37024;20051;60022;16771!02;35231;6874;74132;17631!03;0;0;133868;0!04;133868;0;0;0!05;133868;0;0;0!06;0;0;133868;0!07;0;0;133868;0 |macroap...")
 
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27-111C8;0.21539!10789-110H6;0.128726!10828-111C9;0.0832834!10788-110H5;0.0959115!10792-110H9;0.0614625!10765-110E9;0.107863!10829-111D1;0.319759!10830-111D2;0.135789!10831-111D3;0.144119!10832-111D4;0.121471!10833-111D5;0.435841!10764-110E8;0.272668!10770-110F5;0.300066!10399-106A3;0.0133471!10400-106A4;0.164174!10405-106A9;0.193634!10834-111D6;0.218619!10835-111D7;0.0790427!10836-111D8;0.0603542!10837-111D9;0.0900106!10699-109G6;0.0950536!10802-111A1;0.133827!10796-110I4;0.0783292!10010-101C1;0.106426!10810-111A9;0.233552!10421-106C7;0.282249!10708-109H6;0.0873713!12235-129G3;0.402487!12236-129G4;0.631133!12237-129G5;0.540472!10167-103B5;0.4851!10151-102I7;0.15795!10428-106D5;0.156696!10795-110I3;0.326694!10805-111A4;0.159046!10052-101G7;0.917765!10189-103D9;0.116835!10589-108D4;0.418479!10425-106D2;0.374656!10427-106D4;0.61836!10702-109G9;0.413422!10432-106D9;0.463616!10496-107C1;0.0231677!10718-109I7;0.0130334!10011-101C2;0.198441!10053-101G8;0.17623!10686-109F2;0.327571!10084-102B3;0.00598941!10012-101C3;0.154636!10085-102B4;0.158095!10482-107A5;0.130887!10419-106C5;0.187703!10080-102A8;0.174511!10760-110E4;0.585124!10709-109H7;0.0321621!10710-109H8;0.0560521!10703-109H1;0.0460748!10719-109I8;0.970794!10642-109A3;0.173004!10177-103C6;0.38328!10164-103B2;0.134073!10173-103C2;0.13513!10166-103B4;0.0768973!10083-102B2;0.09185!10188-103D8;0.118211!10552-107I3;0.126967!10553-107I4;0.246907!10013-101C4;0.456434!10536-107G5;0.248979!10618-108G6;0.45558!10423-106C9;0.0809646!10785-110H2;0.0530888!12238-129G6;0.0945457!12239-129G7;0.984805!12240-129G8;0.757991!10416-106C2;0.303779!10801-110I9;0.0890289!10766-110F1;0.109922!10824-111C5;0.0736954!10825-111C6;0.112064!10826-111C7;0.109813!10454-106G4;0.102722!10409-106B4;0.0979522!10638-108I8;0.1233!10636-108I6;0.0485986!10513-107D9;0.123678!10420-106C6;0.0173101!10082-102B1;0.83229!10014-101C5;0.787339!10070-101I7;0.530295!10452-106G2;0.419543!10453-106G3;0.463585!10449-106F8;0.281296!10042-101F6;0.275771!10069-101I6;0.132457!10193-103E4;0.0989971!10631-108I1;0.168699!10438-106E6;0.197486!10488-107B2;0.233759!10196-103E7;0.21234!10071-101I8;0.286066!10071-101I8;0.199073!10041-101F5;0.1042!10451-106G1;0.0821175!10450-106F9;0.549274!10604-108F1;0.817597!10605-108F2;0.131322!10606-108F3;0.0896144!10603-108E9;0.279538!10497-107C2;0.221304!10448-106F7;0.149257!10643-109A4;0.308028!10426-106D3;0.00901558!10431-106D8;0.122367!10197-103E8;0.127046!10443-106F2;0.298818!10815-111B5;0.776795!10816-111B6;0.0911961!10817-111B7;0.156121!10015-101C6;0.0838055!10410-106B5;0.644745!10054-101G9;0.652133!10758-110E2;0.152814!10711-109H9;0.170715!10040-101F4;0.32652!10470-106I2;0.156623!10415-106C1;0.270709!10198-103E9;0.00924589!10614-108G2;0.344914!10612-108F9;0.103068!10549-107H9;0.0904312!10615-108G3;0.458476!10487-107B1;0.86174!10433-106E1;0.0689914!10688-109F4;0.710589!10444-106F3;0.0739718!10444-106F3;0.738754!10485-107A8;0.927251!10413-106B8;0.220556!10175-103C4;0.754944!10161-103A8;0.197233!12131-128D7;0.197993!10624-108H3;0.471734!10712-109I1;0.204258!10205-103F7;0.205544!10206-103F8;0.113766!10207-103F9;0.143041!10050-101G5;0.167674!10051-101G6;0.882053!10016-101C7;0.410101!10046-101G1;0.264995!10778-110G4;0.0723646!10633-108I3;0.296465!10818-111B8;0.212887!10819-111B9;0.0699867!10820-111C1;0.0613951!10484-107A7;0.0682162!10808-111A7;0.339598!10169-103B7;0.18803!10153-102I9;0.165175!13425-144D5;0.13809!13433-144E4;0.962107!13437-144E8;0.9114!11904-125F5;0.765218!11905-125F6;0.551215!10039-101F3;0.789512!10791-110H8;0.158387!10017-101C8;0.0291419!10045-101F9;0.897763!10509-107D5;0.149973!10839-111E2;0.380251!10692-109F8;0.216506!10079-102A7;0.597741!10078-102A6;0.390377!10721-110A1;0.546447!10569-108B2;0.35393!10570-108B3;0.418213!10571-108B4;0.518267!10647-109A8;0.792309!10752-110D5;0.684203!10782-110G8;0.211799!10726-110A6;0.197402!10018-101C9;0.389545!10086-102B5;0.183038!10182-103D2;0.283919!10165-103B3;0.187183!10499-107C4;0.183874!10408-106B3;0.0443421!10019-101D1;0.224014!10068-101I5;0.388472!10075-102A3;0.0810934!10077-102A5;0.603634!10727-110A7;0.783943!10775-110G1;0.179208!10412-106B7;0.118409!12231-129F8;0.568069!12232-129F9;0.0411975!12233-129G1;0.04619!12234-129G2;0.0460498!10414-106B9;0.0502559!10170-103B8;0.5941!10183-103D3;0.187603!10150-102I6;0.189126!10174-103C3;0.161538!10155-103A2;0.155117!10038-101F2;0.134099!10838-111E1;0.1563!10759-110E3;0.160299!10514-107E1;0.109084!10465-106H6;0.0137287!10691-109F7;0.198695!10843-111E6;0.0558096!10844-111E7;0.800962!11747-123G1;0.429513!11748-123G2;0.505822!11749-123G3;0.0693655!11750-123G4;0.0970126!11751-123G5;0.131614!11840-124H4;0.121095!11752-123G6;0.152945!11753-123G7;0.551512!11754-123G8;0.114804!11755-123G9;0.240667!11756-123H1;0.870438!11833-124G6;0.723652!11760-123H5;0.976957!11836-124G9;0.452743!11758-123H3;0.10075!11835-124G8;0.156916!11762-123H7;0.821387!11838-124H2;0.516531!11757-123H2;0.429126!11759-123H4;0.989683!11761-123H6;0.147243!11842-124H6;0.341452!11837-124H1;0.386745!10568-108B1;0.377504!13230-141I8;0.292245!13231-141I9;0.25192!10696-109G3;0.159005!10493-107B7;0.0365162!10494-107B8;0.175017!10850-111F4;0.316207!10851-111F5;0.245222!10852-111F6;0.0912149!10853-111F7;0.146744!10854-111F8;0.35657!10855-111F9;0.0393311!10856-111G1;0.362696!10847-111F1;0.0723228!10846-111E9;0.0736229!10848-111F2;0.0575212!10845-111E8;0.0279906!10857-111G2;0.0317611!10858-111G3;0.0243389!10156-103A3;0.0118164!11901-125F2;0.174745!11902-125F3;0.565988!11903-125F4;0.593489!10689-109F5;0.494686!10648-109A9;0.238588!10784-110H1;0.0544378!10744-110C6;0.0922845!10772-110F7;0.177357!10474-106I6;0.0643552!10600-108E6;0.170857!10684-109E9;0.822775!12226-129F3;0.83607!12227-129F4;0.0832756!10508-107D4;0.0720223!10539-107G8;0.217029!10607-108F4;0.452865!10555-107I6;0.491314!10774-110F9;0.176696!10637-108I7;0.644967!10663-109C6;0.100647!10728-110A8;0.148007!10729-110A9;0.220742!10430-106D7;0.0876979!10730-110B1;0.471703!10813-111B3;0.392773!10812-111B2;0.0675048!10037-101F1;0.376392!10172-103C1;0.146605!10163-103B1;0.195675!10076-102A4;0.160709!10073-102A1;0.182297!10036-101E9;0.132594!10195-103E6;0.157974!10277-104E7;0.151046!10434-106E2;0.118817!10550-107I1;0.0547495!10545-107H5;0.0687309!10544-107H4;0.0438376!10704-109H2;0.334394!10510-107D6;0.483077!10558-107I9;0.510061!10020-101D2;0.432565!10732-110B3;0.0531472!10049-101G4;0.887149!10698-109G5;0.27409!10437-106E5;0.0827937!10417-106C3;0.0265289!10035-101E8;0.214814!10171-103B9;0.171269!10157-103A4;0.156854!10034-101E7;0.169596!10072-101I9;0.1587!10199-103F1;0.116131!10200-103F2;0.340442!10697-109G4;0.253413!10723-110A3;0.263491!10179-103C8;0.139865!10160-103A7;0.200554!10180-103C9;0.275356!10162-103A9;0.101879!10021-101D3;0.152558!10840-111E3;0.861!10706-109H4;0.227255!10033-101E6;0.2551!10032-101E5;0.199671!10490-107B4;0.175639!10439-106E7;0.0258174!10022-101D4;0.0153636!10176-103C5;0.205283!10469-106I1;0.150664!10067-101I4;0.122359!10411-106B6;0.18818!10471-106I3;0.0757904!10030-101E3;0.362154!10475-106I7;0.0959894!10787-110H4;0.858363!10477-106I9;0.512876!10695-109G2;0.0805886!11771-123I7;0.0755019!11772-123I8;0.75154!11773-123I9;0.717536!10093-102C3;0.373683!10442-106F1;0.651086!10442-106F1;0.362724!10201-103F3;0.348289!10639-108I9;0.260514!11843-124H7;0.26361!11841-124H5;0.778732!10693-109F9;0.255575!10436-106E4;0.602573!10483-107A6;0.0341834!10282-104F3;0.0537358!10023-101D5;0.563876!10066-101I3;0.336866!10065-101I2;0.148022!10800-110I8;0.202938!10610-108F7;0.723263!10841-111E4;0.300009!10541-107H1;0.608347!10842-111E5;0.989501!10562-108A4;0.475965!10024-101D6;0.651839!10064-101I1;0.887508!10609-108F6;0.445804!10048-101G3;0.0602345!10781-110G7;0.138254!10181-103D1;0.49059!10159-103A6;0.168687!10056-101H2;0.159769!10737-110B8;0.142101!10025-101D7;0.332744!10044-101F8;0.666626!10424-106D1;0.46119!10463-106H4;0.286295!10616-108G4;0.185432!10486-107A9;0.168067!10062-101H8;0.038502!10202-103F4;0.42333!10158-103A5;0.763172!10441-106E9;0.1808!10031-101E4;0.0528334!10063-101H9;0.148367!10063-101H9;0.117695!11763-123H8;0.291879!11765-123I1;0.391434!11768-123I4;0.243701!10807-111A6;0.327756!10790-110H7;0.57556!10798-110I6;0.659136!10786-110H3;0.79493!10591-108D6;0.00792418!10593-108D8;0.879575!10590-108D5;0.567024!10026-101D8;0.716229!10096-102C6;0.135132!10168-103B6;0.255623!10154-103A1;0.141967!10209-103G2;0.164725!10061-101H7;0.691951!10027-101D9;0.202782!10043-101F7;0.968328!10783-110G9;0.166736!10028-101E1;0.114671!10060-101H6;0.363295!10203-103F5;0.128543!10059-101H5;0.905149!10047-101G2;0.63212!10029-101E2;0.770186!10058-101H4;0.805807!10418-106C4;0.254651!10492-107B6;0.103115!10694-109G1;0.0416146!10797-110I5;0.101659!10057-101H3;0.161591!10100-102D1;0.221115!10055-101H1;0.124912!10204-103F6;0.170824!10191-103E2;0.347235!10563-108A5;0.209131
|name=motif561
|name=motif561
|tomtom_result=Klf4#MA0039.1;3;0.000238852;0.113694;0.22733;7;GGGAAGG;TAAAGGAAGG;+!EWSR1-FLI1#MA0149.1;-1;0.000958011;0.456013;0.291156;6;GGGAAGG;GGAAGGAAGGAAGGAAGG;+!SPI1#MA0080.2;0;0.00113315;0.539381;0.291156;6;GGGAAGG;CGGAAG;+!GCR2#MA0305.1;0;0.00122365;0.582459;0.291156;7;GGGAAGG;AGGAAGC;-!TEC1#MA0406.1;0;0.00181681;0.8648;0.345832;7;GGGAAGG;GGGAATGT;-!SPI1#MA0080.2;0;0.00518331;2.46726;0.82221;7;GGGAAGG;AGGAAGT;+!Stat3#MA0144.1;4;0.00958795;4.56386;0.999747;6;GGGAAGG;TTCCAGGAAG;+!SP1#MA0079.2;1;0.0100745;4.79545;0.999747;7;GGGAAGG;GGGGGCGGGG;-!Kr#MA0452.1;0;0.012687;6.03902;0.999747;7;GGGAAGG;CAAAAGGGTTA;+!STAT1#MA0137.2;7;0.0156705;7.45914;0.999747;7;GGGAAGG;GGTTTCCGGGAAATG;-!Eip74EF#MA0026.1;1;0.0164274;7.81944;0.999747;6;GGGAAGG;CCGGAAG;+!ETS1#MA0098.1;0;0.0166735;7.93657;0.999747;6;GGGAAGG;CGGAAA;-!GABPA#MA0062.1;2;0.0200372;9.53771;0.999747;7;GGGAAGG;ACCGGAAGAG;+
}}
}}

Latest revision as of 12:54, 7 September 2012

Full Name: motif561

Motif matrix
POACGT
0137024200516002216771
023523168747413217631
03001338680
04133868000
05133868000
06001338680
07001338680

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Klf4#MA0039.130.0002388520.1136940.227337GGGAAGGTAAAGGAAGG+
EWSR1-FLI1#MA0149.1-10.0009580110.4560130.2911566GGGAAGGGGAAGGAAGGAAGGAAGG+
SPI1#MA0080.200.001133150.5393810.2911566GGGAAGGCGGAAG+
GCR2#MA0305.100.001223650.5824590.2911567GGGAAGGAGGAAGC-
TEC1#MA0406.100.001816810.86480.3458327GGGAAGGGGGAATGT-
SPI1#MA0080.200.005183312.467260.822217GGGAAGGAGGAAGT+
Stat3#MA0144.140.009587954.563860.9997476GGGAAGGTTCCAGGAAG+
SP1#MA0079.210.01007454.795450.9997477GGGAAGGGGGGGCGGGG-
Kr#MA0452.100.0126876.039020.9997477GGGAAGGCAAAAGGGTTA+
STAT1#MA0137.270.01567057.459140.9997477GGGAAGGGGTTTCCGGGAAATG-
Eip74EF#MA0026.110.01642747.819440.9997476GGGAAGGCCGGAAG+
ETS1#MA0098.100.01667357.936570.9997476GGGAAGGCGGAAA-
GABPA#MA0062.120.02003729.537710.9997477GGGAAGGACCGGAAGAG+