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MacroAPE 1083:NKX22 si: Difference between revisions

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-106D6;0.250005!10464-106H5;0.493317!10827-111C8;0.267009!10789-110H6;0.639563!10828-111C9;0.32601!10788-110H5;0.386553!10792-110H9;0.899191!10765-110E9;0.504236!10829-111D1;0.519782!10830-111D2;0.866474!10831-111D3;0.595945!10832-111D4;0.849579!10833-111D5;0.915386!10764-110E8;0.591202!10770-110F5;0.810649!10399-106A3;0.795545!10400-106A4;0.691546!10405-106A9;0.681621!10834-111D6;0.611257!10835-111D7;0.899866!10836-111D8;0.765034!10837-111D9;0.252756!10699-109G6;0.300818!10802-111A1;0.139925!10796-110I4;0.830165!10010-101C1;0.451523!10810-111A9;0.730088!10421-106C7;0.349889!10708-109H6;0.908324!12235-129G3;0.257498!12236-129G4;0.701287!12237-129G5;0.480103!10167-103B5;0.428256!10151-102I7;0.157255!10428-106D5;0.249164!10795-110I3;0.767251!10805-111A4;0.0262738!10052-101G7;0.883282!10189-103D9;0.56401!10589-108D4;0.759621!10425-106D2;0.139336!10427-106D4;0.123136!10702-109G9;0.611949!10432-106D9;0.0319136!10496-107C1;0.872701!10718-109I7;0.21163!10011-101C2;0.780875!10053-101G8;0.860865!10686-109F2;0.00669314!10084-102B3;0.959006!10012-101C3;0.114686!10085-102B4;0.319254!10482-107A5;0.432011!10419-106C5;0.603947!10080-102A8;0.529956!10760-110E4;0.400277!10709-109H7;0.581722!10710-109H8;0.828627!10703-109H1;0.484966!10719-109I8;0.7922!10642-109A3;0.508448!10177-103C6;0.590376!10164-103B2;0.0250031!10173-103C2;0.186655!10166-103B4;0.560687!10083-102B2;0.455511!10188-103D8;0.520799!10552-107I3;0.67591!10553-107I4;0.374902!10013-101C4;0.423805!10536-107G5;0.960428!10618-108G6;0.100873!10423-106C9;0.335313!10785-110H2;0.626233!12238-129G6;0.593216!12239-129G7;0.474369!12240-129G8;0.794159!10416-106C2;0.505036!10801-110I9;0.0483458!10766-110F1;0.452125!10824-111C5;0.258765!10825-111C6;0.479404!10826-111C7;0.471201!10454-106G4;0.414684!10409-106B4;0.230464!10638-108I8;0.888764!10636-108I6;0.740745!10513-107D9;0.942841!10420-106C6;0.503602!10082-102B1;0.391563!10014-101C5;0.69122!10070-101I7;0.867556!10452-106G2;0.843591!10453-106G3;0.211499!10449-106F8;0.473568!10042-101F6;0.2979!10069-101I6;0.0319937!10193-103E4;0.832089!10631-108I1;0.174799!10438-106E6;0.839515!10488-107B2;0.203985!10196-103E7;0.500384!10071-101I8;0.898548!10071-101I8;0.966185!10041-101F5;0.0276174!10451-106G1;0.821713!10450-106F9;0.811664!10604-108F1;0.760087!10605-108F2;0.683264!10606-108F3;0.66369!10603-108E9;0.866465!10497-107C2;0.840716!10448-106F7;0.210566!10643-109A4;0.305534!10426-106D3;0.181138!10431-106D8;0.818608!10197-103E8;0.26628!10443-106F2;0.823729!10815-111B5;0.541426!10816-111B6;0.77072!10817-111B7;0.941976!10015-101C6;0.78865!10410-106B5;0.758237!10054-101G9;0.337268!10758-110E2;0.995144!10711-109H9;0.156318!10040-101F4;0.12122!10470-106I2;0.675542!10415-106C1;0.26931!10198-103E9;0.343232!10614-108G2;0.728274!10612-108F9;0.927881!10549-107H9;0.951962!10615-108G3;0.36415!10487-107B1;0.548637!10433-106E1;0.902949!10688-109F4;0.235304!10444-106F3;0.978045!10444-106F3;0.0368417!10485-107A8;0.0168111!10413-106B8;0.848714!10175-103C4;0.0474945!10161-103A8;0.0845395!12131-128D7;0.00112801!10624-108H3;0.993454!10712-109I1;0.563618!10205-103F7;0.91497!10206-103F8;0.715424!10207-103F9;0.838194!10050-101G5;0.838344!10051-101G6;0.388922!10016-101C7;0.327489!10046-101G1;0.642812!10778-110G4;0.443589!10633-108I3;0.769857!10818-111B8;0.938893!10819-111B9;0.628524!10820-111C1;0.640714!10484-107A7;0.602293!10808-111A7;0.971804!10169-103B7;0.247895!10153-102I9;0.533933!13425-144D5;0.128123!13433-144E4;0.517249!13437-144E8;0.27408!11904-125F5;0.440023!11905-125F6;0.63173!10039-101F3;0.917081!10791-110H8;0.692863!10017-101C8;0.881815!10045-101F9;0.808273!10509-107D5;0.754828!10839-111E2;0.666054!10692-109F8;0.502482!10079-102A7;0.918761!10078-102A6;0.388577!10721-110A1;0.22145!10569-108B2;0.956063!10570-108B3;0.785017!10571-108B4;0.403876!10647-109A8;0.247008!10752-110D5;0.133082!10782-110G8;0.318403!10726-110A6;0.927649!10018-101C9;0.447198!10086-102B5;0.263195!10182-103D2;0.0630564!10165-103B3;0.0673505!10499-107C4;0.0509227!10408-106B3;0.937285!10019-101D1;0.280654!10068-101I5;0.556665!10075-102A3;0.184766!10077-102A5;0.300149!10727-110A7;0.291469!10775-110G1;0.824117!10412-106B7;0.169458!12231-129F8;0.510704!12232-129F9;0.728589!12233-129G1;0.498577!12234-129G2;0.533053!10414-106B9;0.498915!10170-103B8;0.455354!10183-103D3;0.264689!10150-102I6;0.340472!10174-103C3;0.140936!10155-103A2;0.000993252!10038-101F2;0.0062008!10838-111E1;0.0742476!10759-110E3;0.109388!10514-107E1;0.00736419!10465-106H6;0.755154!10691-109F7;0.79608!10843-111E6;0.717069!10844-111E7;0.587682!11747-123G1;0.723642!11748-123G2;0.275562!11749-123G3;0.272249!11750-123G4;0.590787!11751-123G5;0.350627!11840-124H4;0.622867!11752-123G6;0.519067!11753-123G7;0.63845!11754-123G8;0.194733!11755-123G9;0.532625!11756-123H1;0.172431!11833-124G6;0.179523!11760-123H5;0.0609682!11836-124G9;0.148063!11758-123H3;0.382922!11835-124G8;0.276052!11762-123H7;0.0685023!11838-124H2;0.111113!11757-123H2;0.232862!11759-123H4;0.0394955!11761-123H6;0.212458!11842-124H6;0.246254!11837-124H1;0.0711065!10568-108B1;0.09738!13230-141I8;0.00145665!13231-141I9;0.721716!10696-109G3;0.5417!10493-107B7;0.520591!10494-107B8;0.572576!10850-111F4;0.418494!10851-111F5;0.855405!10852-111F6;0.751858!10853-111F7;0.550068!10854-111F8;0.441937!10855-111F9;0.873744!10856-111G1;0.348612!10847-111F1;0.492752!10846-111E9;0.527605!10848-111F2;0.968402!10845-111E8;0.854203!10857-111G2;0.720111!10858-111G3;0.862723!10156-103A3;0.95694!11901-125F2;0.148821!11902-125F3;0.0191907!11903-125F4;0.165051!10689-109F5;0.235606!10648-109A9;0.837914!10784-110H1;0.49162!10744-110C6;0.472737!10772-110F7;0.317034!10474-106I6;0.707299!10600-108E6;0.142449!10684-109E9;0.726958!12226-129F3;0.637811!12227-129F4;0.456049!10508-107D4;0.118591!10539-107G8;0.203859!10607-108F4;0.329838!10555-107I6;0.676848!10774-110F9;0.00269481!10637-108I7;0.835821!10663-109C6;0.760623!10728-110A8;0.869986!10729-110A9;0.242957!10430-106D7;0.895631!10730-110B1;0.417573!10813-111B3;0.430812!10812-111B2;0.90952!10037-101F1;0.727923!10172-103C1;0.524689!10163-103B1;0.101774!10076-102A4;0.0292607!10073-102A1;0.626541!10036-101E9;0.0161079!10195-103E6;0.364627!10277-104E7;0.578433!10434-106E2;0.0820629!10550-107I1;0.987707!10545-107H5;0.781321!10544-107H4;0.399319!10704-109H2;0.989662!10510-107D6;0.145411!10558-107I9;0.125072!10020-101D2;0.408696!10732-110B3;0.726198!10049-101G4;0.0626591!10698-109G5;0.375685!10437-106E5;0.584458!10417-106C3;0.100245!10035-101E8;0.543914!10171-103B9;0.458129!10157-103A4;0.127499!10034-101E7;0.171806!10072-101I9;0.35273!10199-103F1;0.0176771!10200-103F2;0.862326!10697-109G4;0.706091!10723-110A3;0.704797!10179-103C8;0.674237!10160-103A7;0.259229!10180-103C9;0.295083!10162-103A9;0.196749!10021-101D3;0.107779!10840-111E3;0.453935!10706-109H4;0.736061!10033-101E6;0.73283!10032-101E5;0.178099!10490-107B4;0.400544!10439-106E7;0.863154!10022-101D4;0.817264!10176-103C5;0.89981!10469-106I1;0.402435!10067-101I4;0.963473!10411-106B6;0.528517!10471-106I3;0.828906!10030-101E3;0.826276!10475-106I7;0.306899!10787-110H4;0.135899!10477-106I9;0.321738!10695-109G2;0.139384!11771-123I7;0.923787!11772-123I8;0.250043!11773-123I9;0.185087!10093-102C3;0.363258!10442-106F1;0.533832!10442-106F1;0.185263!10201-103F3;0.17927!10639-108I9;0.829834!11843-124H7;0.377765!11841-124H5;0.0272949!10693-109F9;0.0586799!10436-106E4;0.666556!10483-107A6;0.936699!10282-104F3;0.925533!10023-101D5;0.868633!10066-101I3;0.789856!10065-101I2;0.474919!10800-110I8;0.880988!10610-108F7;0.744202!10841-111E4;0.573728!10541-107H1;0.895422!10842-111E5;0.31948!10562-108A4;0.0866787!10024-101D6;0.82472!10064-101I1;0.944718!10609-108F6;0.956595!10048-101G3;0.502819!10781-110G7;0.908792!10181-103D1;0.949791!10159-103A6;0.00281894!10056-101H2;0.00271825!10737-110B8;0.336224!10025-101D7;0.177643!10044-101F8;0.433173!10424-106D1;0.0567927!10463-106H4;0.577926!10616-108G4;0.913322!10486-107A9;0.995059!10062-101H8;0.720353!10202-103F4;0.349514!10158-103A5;0.944105!10441-106E9;2.93807e-05!10031-101E4;0.402699!10063-101H9;0.424225!10063-101H9;0.047623!11763-123H8;0.995919!11765-123I1;0.262294!11768-123I4;0.75003!10807-111A6;0.583372!10790-110H7;0.151822!10798-110I6;0.336744!10786-110H3;0.189348!10591-108D6;0.539671!10593-108D8;0.949854!10590-108D5;0.371094!10026-101D8;0.663682!10096-102C6;0.365646!10168-103B6;0.564413!10154-103A1;0.0127164!10209-103G2;0.00282974!10061-101H7;0.934897!10027-101D9;0.584847!10043-101F7;0.0741801!10783-110G9;0.0685452!10028-101E1;0.291956!10060-101H6;0.850937!10203-103F5;0.539751!10059-101H5;0.803596!10047-101G2;0.999353!10029-101E2;0.568027!10058-101H4;0.871386!10418-106C4;0.900399!10492-107B6;0.529877!10694-109G1;0.934403!10797-110I5;0.888197!10057-101H3;0.847728!10100-102D1;0.933275!10055-101H1;0.707495!10204-103F6;0.869093!10191-103E2;0.0563384!10563-108A5;0.564546
|name=NKX22_si
|name=NKX22_si
|tomtom_result=bap#MA0211.1;-1;5.05211e-06;0.00240481;0.0047428;7;TTTAAGTGGTTT;TTAAGTG;+!ceh-22#MA0264.1;1;0.000114787;0.0546388;0.0538798;10;TTTAAGTGGTTT;TTTCAAGTGGT;-!Nkx3-2#MA0122.1;-1;0.00024477;0.11651;0.0740487;9;TTTAAGTGGTTT;TTAAGTGGA;+!tin#MA0247.1;0;0.000315512;0.150184;0.0740487;8;TTTAAGTGGTTT;CTCAAGTG;+!Nkx2-5#MA0063.1;-1;0.000710727;0.338306;0.133443;7;TTTAAGTGGTTT;TTAATTG;+!vnd#MA0253.1;1;0.000962041;0.457932;0.150523;8;TTTAAGTGGTTT;TTTCAAGTG;+!z#MA0255.1;-1;0.00172597;0.821564;0.231472;10;TTTAAGTGGTTT;TTGAGTGATT;+!Nobox#MA0125.1;-2;0.00384116;1.82839;0.443969;8;TTTAAGTGGTTT;TAATTGGT;+!NK7.1#MA0196.1;-1;0.00425631;2.026;0.443969;7;TTTAAGTGGTTT;TTAATTG;+!Vsx2#MA0180.1;0;0.00751189;3.57566;0.541094;9;TTTAAGTGGTTT;TTTAATTAG;+!MAX#MA0058.1;-1;0.00799684;3.8065;0.541094;10;TTTAAGTGGTTT;TCACGTGGTC;-!En1#MA0027.1;-3;0.00871819;4.14986;0.541094;9;TTTAAGTGGTTT;AAGTAGTGCCC;+!NKX3-1#MA0124.1;-2;0.00929292;4.42343;0.541094;7;TTTAAGTGGTTT;TAAGTAT;-!CG15696#MA0176.1;-1;0.00985465;4.69082;0.541094;7;TTTAAGTGGTTT;TTAATTA;+!hbn#MA0226.1;-1;0.00985465;4.69082;0.541094;7;TTTAAGTGGTTT;TTAATTA;+!unc-4#MA0250.1;-1;0.00985465;4.69082;0.541094;7;TTTAAGTGGTTT;TTAATTG;+!Hmx#MA0192.1;-1;0.0104458;4.97221;0.541094;7;TTTAAGTGGTTT;TTAATTG;+!ARR1#MA0274.1;1;0.0117057;5.57189;0.541094;7;TTTAAGTGGTTT;ATTCAAGT;-!slou#MA0245.1;-1;0.011725;5.58109;0.541094;7;TTTAAGTGGTTT;TTAATTA;+!CG32532#MA0179.1;-1;0.0124166;5.91029;0.541094;7;TTTAAGTGGTTT;TTAATTA;+!B-H2#MA0169.1;-1;0.0131448;6.25694;0.541094;7;TTTAAGTGGTTT;TTAATTG;+!CG7056#MA0183.1;0;0.0136835;6.51333;0.541094;8;TTTAAGTGGTTT;TTTAATTA;+!Ubx#MA0094.2;0;0.0144052;6.85686;0.541094;8;TTTAAGTGGTTT;TTTAATTA;+!CG13424#MA0175.1;-1;0.0147174;7.00547;0.541094;7;TTTAAGTGGTTT;TTAATTG;+!RUNX1#MA0002.2;-1;0.0151959;7.23323;0.541094;11;TTTAAGTGGTTT;GTCTGTGGTTT;+!tup#MA0248.1;-1;0.0155623;7.40766;0.541094;7;TTTAAGTGGTTT;TTAATTG;+!CG34031#MA0444.1;-1;0.0155623;7.40766;0.541094;7;TTTAAGTGGTTT;TTAATTG;+!RUNX1#MA0002.2;-1;0.0166205;7.91137;0.557248;11;TTTAAGTGGTTT;TATTGTGGTTA;+!CG11085#MA0171.1;-1;0.0173786;8.27223;0.562574;7;TTTAAGTGGTTT;TTAATTG;+!en#MA0220.1;-1;0.0183541;8.73654;0.56848;7;TTTAAGTGGTTT;TTAATTA;+!B-H1#MA0168.1;-1;0.0193778;9.22381;0.56848;7;TTTAAGTGGTTT;TTAATTG;+!C15#MA0170.1;-1;0.0193778;9.22381;0.56848;7;TTTAAGTGGTTT;TTAATTA;+!Dr#MA0188.1;-2;0.0204491;9.73379;0.57854;7;TTTAAGTGGTTT;TAATTGG;-
}}
}}

Latest revision as of 13:01, 7 September 2012

Full Name: NKX22_si

Motif matrix
POACGT
12.41463414634146422.8536585365853767.58536585365854611.634146341463437
25.7073170731707280.01.658536585365853817.121951219512205
30.07.9024390243902612.53658536585366214.048780487804901
424.48780487804880.00.00.0
524.48780487804880.00.00.0
60.00.024.48780487804880.0
70.8780487804878060.00.023.609756097561
88.780487804878060.87804878048780614.8292682926829420.0
90.43902439024390188.34146341463414810.5365853658536575.170731707317082
102.63414634146342050.8780487804878061.317073170731707619.65853658536587
112.19512195121951370.01.75609756097561220.536585365853668
126.585365853658553.0731707317073326.0487804878048828.78048780487806

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
bap#MA0211.1-15.05211e-060.002404810.00474287TTTAAGTGGTTTTTAAGTG+
ceh-22#MA0264.110.0001147870.05463880.053879810TTTAAGTGGTTTTTTCAAGTGGT-
Nkx3-2#MA0122.1-10.000244770.116510.07404879TTTAAGTGGTTTTTAAGTGGA+
tin#MA0247.100.0003155120.1501840.07404878TTTAAGTGGTTTCTCAAGTG+
Nkx2-5#MA0063.1-10.0007107270.3383060.1334437TTTAAGTGGTTTTTAATTG+
vnd#MA0253.110.0009620410.4579320.1505238TTTAAGTGGTTTTTTCAAGTG+
z#MA0255.1-10.001725970.8215640.23147210TTTAAGTGGTTTTTGAGTGATT+
Nobox#MA0125.1-20.003841161.828390.4439698TTTAAGTGGTTTTAATTGGT+
NK7.1#MA0196.1-10.004256312.0260.4439697TTTAAGTGGTTTTTAATTG+
Vsx2#MA0180.100.007511893.575660.5410949TTTAAGTGGTTTTTTAATTAG+
MAX#MA0058.1-10.007996843.80650.54109410TTTAAGTGGTTTTCACGTGGTC-
En1#MA0027.1-30.008718194.149860.5410949TTTAAGTGGTTTAAGTAGTGCCC+
NKX3-1#MA0124.1-20.009292924.423430.5410947TTTAAGTGGTTTTAAGTAT-
CG15696#MA0176.1-10.009854654.690820.5410947TTTAAGTGGTTTTTAATTA+
hbn#MA0226.1-10.009854654.690820.5410947TTTAAGTGGTTTTTAATTA+
unc-4#MA0250.1-10.009854654.690820.5410947TTTAAGTGGTTTTTAATTG+
Hmx#MA0192.1-10.01044584.972210.5410947TTTAAGTGGTTTTTAATTG+
ARR1#MA0274.110.01170575.571890.5410947TTTAAGTGGTTTATTCAAGT-
slou#MA0245.1-10.0117255.581090.5410947TTTAAGTGGTTTTTAATTA+
CG32532#MA0179.1-10.01241665.910290.5410947TTTAAGTGGTTTTTAATTA+
B-H2#MA0169.1-10.01314486.256940.5410947TTTAAGTGGTTTTTAATTG+
CG7056#MA0183.100.01368356.513330.5410948TTTAAGTGGTTTTTTAATTA+
Ubx#MA0094.200.01440526.856860.5410948TTTAAGTGGTTTTTTAATTA+
CG13424#MA0175.1-10.01471747.005470.5410947TTTAAGTGGTTTTTAATTG+
RUNX1#MA0002.2-10.01519597.233230.54109411TTTAAGTGGTTTGTCTGTGGTTT+
tup#MA0248.1-10.01556237.407660.5410947TTTAAGTGGTTTTTAATTG+
CG34031#MA0444.1-10.01556237.407660.5410947TTTAAGTGGTTTTTAATTG+
RUNX1#MA0002.2-10.01662057.911370.55724811TTTAAGTGGTTTTATTGTGGTTA+
CG11085#MA0171.1-10.01737868.272230.5625747TTTAAGTGGTTTTTAATTG+
en#MA0220.1-10.01835418.736540.568487TTTAAGTGGTTTTTAATTA+
B-H1#MA0168.1-10.01937789.223810.568487TTTAAGTGGTTTTTAATTG+
C15#MA0170.1-10.01937789.223810.568487TTTAAGTGGTTTTTAATTA+
Dr#MA0188.1-20.02044919.733790.578547TTTAAGTGGTTTTAATTGG-
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