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MacroAPE 1083:GCCGCTTTAA,motif411: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.311;0.311;283.321;27.057!2;0.311;224.853;20.526;65.31!3;27.679;166.074;52.87;64.377!4;13.684;35.765;196.863;64.688!5;0.311;252.532;54.736;...")
 
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-107E1;0.221839!10465-106H6;0.885486!10691-109F7;0.950084!10843-111E6;0.395002!10844-111E7;0.79164!11747-123G1;0.333615!11748-123G2;0.281728!11749-123G3;0.345528!11750-123G4;0.995375!11751-123G5;0.123962!11840-124H4;0.447473!11752-123G6;0.65515!11753-123G7;0.766215!11754-123G8;0.286942!11755-123G9;0.0816285!11756-123H1;0.0614352!11833-124G6;0.11048!11760-123H5;0.143436!11836-124G9;0.0128704!11758-123H3;0.973568!11835-124G8;0.686813!11762-123H7;0.0735221!11838-124H2;0.0981104!11757-123H2;0.30271!11759-123H4;0.609881!11761-123H6;0.182037!11842-124H6;0.42373!11837-124H1;0.119294!10568-108B1;0.112438!13230-141I8;0.233605!13231-141I9;0.0109592!10696-109G3;0.000792467!10493-107B7;0.0315074!10494-107B8;0.392469!10850-111F4;0.0933887!10851-111F5;0.412368!10852-111F6;0.109373!10853-111F7;0.14856!10854-111F8;0.657382!10855-111F9;0.00165625!10856-111G1;0.612307!10847-111F1;0.103792!10846-111E9;0.0516053!10848-111F2;0.900966!10845-111E8;0.121381!10857-111G2;0.108108!10858-111G3;0.930249!10156-103A3;0.876754!11901-125F2;0.644715!11902-125F3;0.00061421!11903-125F4;0.00408482!10689-109F5;0.000582584!10648-109A9;0.409007!10784-110H1;0.323749!10744-110C6;0.950835!10772-110F7;0.317034!10474-106I6;0.0263723!10600-108E6;0.00100654!10684-109E9;0.13455!12226-129F3;0.0441203!12227-129F4;0.901229!10508-107D4;0.533054!10539-107G8;0.576883!10607-108F4;0.883809!10555-107I6;0.59714!10774-110F9;0.370182!10637-108I7;0.924271!10663-109C6;0.614499!10728-110A8;0.0904902!10729-110A9;0.092024!10430-106D7;0.0763383!10730-110B1;0.0464968!10813-111B3;0.112873!10812-111B2;0.0305903!10037-101F1;0.0020444!10172-103C1;0.606284!10163-103B1;0.963478!10076-102A4;0.570126!10073-102A1;0.507659!10036-101E9;0.659493!10195-103E6;0.325003!10277-104E7;0.532211!10434-106E2;0.447832!10550-107I1;0.876687!10545-107H5;0.828387!10544-107H4;0.09584!10704-109H2;0.95171!10510-107D6;5.4153e-05!10558-107I9;0.00254804!10020-101D2;0.0397977!10732-110B3;0.0998694!10049-101G4;0.00010211!10698-109G5;0.88904!10437-106E5;0.77425!10417-106C3;0.749347!10035-101E8;0.709849!10171-103B9;0.608403!10157-103A4;0.95223!10034-101E7;0.796696!10072-101I9;0.524641!10199-103F1;0.406175!10200-103F2;0.980238!10697-109G4;0.0724167!10723-110A3;0.896186!10179-103C8;0.356112!10160-103A7;0.3693!10180-103C9;0.871286!10162-103A9;0.21887!10021-101D3;0.279073!10840-111E3;0.314966!10706-109H4;0.00331304!10033-101E6;0.634616!10032-101E5;0.976085!10490-107B4;0.486843!10439-106E7;0.468089!10022-101D4;0.966997!10176-103C5;0.133985!10469-106I1;0.927553!10067-101I4;0.693803!10411-106B6;0.078619!10471-106I3;0.276863!10030-101E3;0.0416896!10475-106I7;0.143526!10787-110H4;0.995437!10477-106I9;0.65948!10695-109G2;0.00384157!11771-123I7;1.06619e-05!11772-123I8;0.786221!11773-123I9;0.278342!10093-102C3;0.414385!10442-106F1;0.554842!10442-106F1;0.070973!10201-103F3;0.112287!10639-108I9;0.0180418!11843-124H7;0.526145!11841-124H5;0.0203357!10693-109F9;0.196373!10436-106E4;0.940986!10483-107A6;0.853204!10282-104F3;0.314588!10023-101D5;0.881658!10066-101I3;0.332762!10065-101I2;0.0504729!10800-110I8;0.244575!10610-108F7;0.509474!10841-111E4;0.16715!10541-107H1;0.747659!10842-111E5;0.98262!10562-108A4;0.816502!10024-101D6;0.754005!10064-101I1;0.79554!10609-108F6;0.401913!10048-101G3;0.0582125!10781-110G7;0.0526859!10181-103D1;0.184341!10159-103A6;0.860772!10056-101H2;0.885683!10737-110B8;0.0591318!10025-101D7;0.00041119!10044-101F8;0.574073!10424-106D1;0.333518!10463-106H4;0.0757519!10616-108G4;0.16494!10486-107A9;0.629197!10062-101H8;0.093696!10202-103F4;0.0301911!10158-103A5;0.948723!10441-106E9;0.711319!10031-101E4;0.00128424!10063-101H9;0.27697!10063-101H9;0.278131!11763-123H8;0.559272!11765-123I1;0.0121482!11768-123I4;0.00574405!10807-111A6;0.0170871!10790-110H7;0.265308!10798-110I6;0.852185!10786-110H3;0.0198189!10591-108D6;0.994779!10593-108D8;0.905431!10590-108D5;0.449002!10026-101D8;0.985541!10096-102C6;0.148195!10168-103B6;0.273486!10154-103A1;0.909437!10209-103G2;0.625553!10061-101H7;0.324917!10027-101D9;0.0491332!10043-101F7;0.221779!10783-110G9;0.951656!10028-101E1;0.0291523!10060-101H6;0.248419!10203-103F5;0.0833752!10059-101H5;0.339203!10047-101G2;0.0954436!10029-101E2;0.942419!10058-101H4;0.431242!10418-106C4;0.0735858!10492-107B6;0.197272!10694-109G1;0.653522!10797-110I5;0.000171805!10057-101H3;0.910884!10100-102D1;0.0444501!10055-101H1;0.144851!10204-103F6;0.0164306!10191-103E2;0.0741014!10563-108A5;0.263482
|name=GCCGCTTTAA,motif411,CNhs10638,T:311.0(9.06%),B:2703.9(4.25%),P:1e-33
|name=GCCGCTTTAA,motif411,CNhs10638,T:311.0(9.06%),B:2703.9(4.25%),P:1e-33
|tomtom_result=MNB1A#MA0053.1;-3;0.00116843;0.556171;0.653409;5;GCCGCTTTAA;GCTTT;-!Dof3#MA0021.1;-2;0.00193347;0.920334;0.653409;6;GCCGCTTTAA;CGCTTT;-!PBF#MA0064.1;-3;0.00219272;1.04374;0.653409;5;GCCGCTTTAA;GCTTT;-!Dof2#MA0020.1;-2;0.00274542;1.30682;0.653409;6;GCCGCTTTAA;TGCTTT;-!TBP#MA0108.2;2;0.00591218;2.8142;0.867972;10;GCCGCTTTAA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;2;0.00591218;2.8142;0.867972;10;GCCGCTTTAA;CCCCGCCTTTTATAC;-!SMP1#MA0383.1;1;0.00638215;3.0379;0.867972;10;GCCGCTTTAA;TGCTAATTTAATTATAGGTAA;-!ARID3A#MA0151.1;-5;0.00932844;4.44034;1;5;GCCGCTTTAA;TTTAAT;-!ceh-22#MA0264.1;0;0.0109633;5.21854;1;10;GCCGCTTTAA;ACCACTTGAAA;+!YER130C#MA0423.1;0;0.0190169;9.05206;1;9;GCCGCTTTAA;ACCCCTATT;+
}}
}}

Latest revision as of 13:32, 7 September 2012

Full Name: GCCGCTTTAA,motif411,CNhs10638,T:311.0(9.06%),B:2703.9(4.25%),P:1e-33

Motif matrix
POACGT
10.3110.311283.32127.057
20.311224.85320.52665.31
327.679166.07452.8764.377
413.68435.765196.86364.688
50.311252.53254.7363.421
60.31119.9040.311290.474
76.220.3119.641294.828
860.02321.4590.311229.207
9234.80518.6621.14836.387
10310.0670.3110.3110.311

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
MNB1A#MA0053.1-30.001168430.5561710.6534095GCCGCTTTAAGCTTT-
Dof3#MA0021.1-20.001933470.9203340.6534096GCCGCTTTAACGCTTT-
PBF#MA0064.1-30.002192721.043740.6534095GCCGCTTTAAGCTTT-
Dof2#MA0020.1-20.002745421.306820.6534096GCCGCTTTAATGCTTT-
TBP#MA0108.220.005912182.81420.86797210GCCGCTTTAACCCCGCCTTTTATAC-
TBP#MA0108.220.005912182.81420.86797210GCCGCTTTAACCCCGCCTTTTATAC-
SMP1#MA0383.110.006382153.03790.86797210GCCGCTTTAATGCTAATTTAATTATAGGTAA-
ARID3A#MA0151.1-50.009328444.4403415GCCGCTTTAATTTAAT-
ceh-22#MA0264.100.01096335.21854110GCCGCTTTAAACCACTTGAAA+
YER130C#MA0423.100.01901699.0520619GCCGCTTTAAACCCCTATT+
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