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MacroAPE 1083:10-VGGAAACGAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;120.802;97.546;104.329;0.323!2;0.323;0.323;322.031;0.323!3;18.734;0.323;240.958;62.985!4;257.431;0.323;64.923;0.323!5;322.031;0.323;0.323;0....")
 
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3607!12177-128I8;0.0616901!12182-129A4;0.045859!12183-129A5;0.0312654!12184-129A6;0.0277787!10809-111A8;0.0842393!10597-108E3;0.136773!10717-109I6;0.088684!10455-106G5;0.309165!10534-107G3;0.1007!10429-106D6;0.991194!10464-106H5;0.645139!10827-111C8;0.410678!10789-110H6;0.0128846!10828-111C9;0.125068!10788-110H5;0.155642!10792-110H9;0.55293!10765-110E9;0.226787!10829-111D1;0.922241!10830-111D2;0.40147!10831-111D3;0.461024!10832-111D4;0.258564!10833-111D5;0.455419!10764-110E8;0.332167!10770-110F5;0.641964!10399-106A3;0.484529!10400-106A4;0.86929!10405-106A9;0.729213!10834-111D6;0.959586!10835-111D7;0.169504!10836-111D8;0.736773!10837-111D9;0.484178!10699-109G6;0.209511!10802-111A1;0.249685!10796-110I4;0.464403!10010-101C1;0.176929!10810-111A9;0.961792!10421-106C7;0.0693594!10708-109H6;0.0214522!12235-129G3;0.683476!12236-129G4;0.677833!12237-129G5;0.211292!10167-103B5;0.377456!10151-102I7;0.00971332!10428-106D5;0.01252!10795-110I3;0.423632!10805-111A4;0.08478!10052-101G7;0.0127832!10189-103D9;0.941556!10589-108D4;0.253124!10425-106D2;0.000819502!10427-106D4;0.0516553!10702-109G9;0.0428678!10432-106D9;0.836042!10496-107C1;0.414863!10718-109I7;0.153952!10011-101C2;0.609013!10053-101G8;0.89737!10686-109F2;0.128205!10084-102B3;0.512036!10012-101C3;0.00222486!10085-102B4;0.0054258!10482-107A5;0.00019493!10419-106C5;0.00596693!10080-102A8;0.000121592!10760-110E4;0.5832!10709-109H7;0.00171034!10710-109H8;0.102893!10703-109H1;0.00428431!10719-109I8;1.90577e-07!10642-109A3;0.0445701!10177-103C6;0.0060714!10164-103B2;0.0191277!10173-103C2;0.014434!10166-103B4;0.000472857!10083-102B2;0.00211597!10188-103D8;0.000263742!10552-107I3;0.0100164!10553-107I4;0.316855!10013-101C4;0.0146607!10536-107G5;0.913798!10618-108G6;0.996594!10423-106C9;0.8318!10785-110H2;0.81739!12238-129G6;0.148006!12239-129G7;0.270109!12240-129G8;0.047991!10416-106C2;0.112134!10801-110I9;0.907521!10766-110F1;0.0100813!10824-111C5;0.290781!10825-111C6;0.901671!10826-111C7;0.958535!10454-106G4;0.787082!10409-106B4;0.524537!10638-108I8;0.388138!10636-108I6;0.436666!10513-107D9;0.565415!10420-106C6;0.00947192!10082-102B1;0.0604667!10014-101C5;0.397861!10070-101I7;0.573445!10452-106G2;0.936038!10453-106G3;0.0361262!10449-106F8;0.104439!10042-101F6;0.0580688!10069-101I6;0.00141559!10193-103E4;0.265961!10631-108I1;0.00349229!10438-106E6;0.440401!10488-107B2;0.0309146!10196-103E7;0.960524!10071-101I8;0.0758373!10071-101I8;0.775201!10041-101F5;0.00167751!10451-106G1;0.904005!10450-106F9;0.872261!10604-108F1;0.46221!10605-108F2;0.303375!10606-108F3;0.427533!10603-108E9;0.489052!10497-107C2;0.123061!10448-106F7;0.637342!10643-109A4;0.97181!10426-106D3;0.289431!10431-106D8;0.534933!10197-103E8;0.969701!10443-106F2;0.188917!10815-111B5;0.50551!10816-111B6;0.809439!10817-111B7;0.976168!10015-101C6;0.83478!10410-106B5;0.239286!10054-101G9;0.247631!10758-110E2;0.0732638!10711-109H9;0.411749!10040-101F4;0.0318393!10470-106I2;0.00304485!10415-106C1;0.277715!10198-103E9;0.288031!10614-108G2;0.496415!10612-108F9;0.944032!10549-107H9;0.0184404!10615-108G3;0.330153!10487-107B1;0.0120175!10433-106E1;0.464845!10688-109F4;0.283625!10444-106F3;0.126614!10444-106F3;0.956461!10485-107A8;0.905301!10413-106B8;0.357081!10175-103C4;0.000466216!10161-103A8;0.0146364!12131-128D7;0.00587248!10624-108H3;0.242068!10712-109I1;0.991997!10205-103F7;0.0763737!10206-103F8;0.371223!10207-103F9;0.150777!10050-101G5;0.106537!10051-101G6;0.0200937!10016-101C7;0.0304011!10046-101G1;0.0990239!10778-110G4;0.21179!10633-108I3;0.371781!10818-111B8;0.00340387!10819-111B9;0.0680852!10820-111C1;0.0747774!10484-107A7;0.0818637!10808-111A7;0.467708!10169-103B7;0.0551038!10153-102I9;0.00680437!13425-144D5;0.00577177!13433-144E4;0.0398675!13437-144E8;0.0159888!11904-125F5;0.0132645!11905-125F6;0.00242693!10039-101F3;0.0331445!10791-110H8;0.00414342!10017-101C8;0.000535061!10045-101F9;0.83849!10509-107D5;0.438833!10839-111E2;0.191948!10692-109F8;0.0661687!10079-102A7;0.45042!10078-102A6;0.163922!10721-110A1;0.358373!10569-108B2;0.325591!10570-108B3;0.912531!10571-108B4;0.675401!10647-109A8;0.733716!10752-110D5;0.676368!10782-110G8;0.138159!10726-110A6;0.57916!10018-101C9;0.809886!10086-102B5;0.422185!10182-103D2;0.00838525!10165-103B3;0.0087241!10499-107C4;0.0148291!10408-106B3;0.0321344!10019-101D1;0.764597!10068-101I5;0.147212!10075-102A3;0.452746!10077-102A5;0.472605!10727-110A7;0.0758452!10775-110G1;0.0434002!10412-106B7;0.014738!12231-129F8;0.615229!12232-129F9;0.950736!12233-129G1;0.50046!12234-129G2;0.728003!10414-106B9;0.927244!10170-103B8;0.000127786!10183-103D3;0.00438511!10150-102I6;0.00453784!10174-103C3;0.00799131!10155-103A2;0.00647981!10038-101F2;0.012685!10838-111E1;0.00852353!10759-110E3;0.00782175!10514-107E1;0.862491!10465-106H6;0.79879!10691-109F7;0.932507!10843-111E6;0.0606531!10844-111E7;0.00388375!11747-123G1;0.00365893!11748-123G2;0.618816!11749-123G3;0.740269!11750-123G4;0.37443!11751-123G5;0.698601!11840-124H4;0.739453!11752-123G6;0.182086!11753-123G7;0.392721!11754-123G8;0.850388!11755-123G9;0.480074!11756-123H1;0.0688368!11833-124G6;0.00279025!11760-123H5;0.11479!11836-124G9;0.00561626!11758-123H3;0.379233!11835-124G8;0.15218!11762-123H7;0.0973275!11838-124H2;0.442625!11757-123H2;0.367435!11759-123H4;0.0625451!11761-123H6;0.00498526!11842-124H6;0.100641!11837-124H1;0.192535!10568-108B1;0.0233892!13230-141I8;0.635467!13231-141I9;0.992721!10696-109G3;0.891458!10493-107B7;0.0702504!10494-107B8;0.904173!10850-111F4;0.819743!10851-111F5;0.883145!10852-111F6;0.702989!10853-111F7;0.358024!10854-111F8;0.863151!10855-111F9;0.299006!10856-111G1;0.920137!10847-111F1;0.085832!10846-111E9;0.362432!10848-111F2;0.934154!10845-111E8;0.861745!10857-111G2;0.661393!10858-111G3;0.91421!10156-103A3;0.989072!11901-125F2;0.00451386!11902-125F3;0.0643808!11903-125F4;0.0722976!10689-109F5;0.0735983!10648-109A9;0.775975!10784-110H1;0.451631!10744-110C6;0.527123!10772-110F7;0.0253485!10474-106I6;0.914193!10600-108E6;0.658285!10684-109E9;0.859111!12226-129F3;0.974879!12227-129F4;0.115134!10508-107D4;0.0898053!10539-107G8;0.000432423!10607-108F4;0.0210552!10555-107I6;0.166843!10774-110F9;0.00340849!10637-108I7;0.0418936!10663-109C6;0.0150339!10728-110A8;0.0311744!10729-110A9;0.135186!10430-106D7;0.363726!10730-110B1;0.702285!10813-111B3;0.0035979!10812-111B2;0.0902927!10037-101F1;0.82529!10172-103C1;0.00604275!10163-103B1;0.00396389!10076-102A4;0.00890311!10073-102A1;0.00192886!10036-101E9;0.00337579!10195-103E6;0.00228673!10277-104E7;0.0044725!10434-106E2;9.73203e-06!10550-107I1;0.0236051!10545-107H5;0.162153!10544-107H4;0.116255!10704-109H2;0.633272!10510-107D6;0.600237!10558-107I9;0.707107!10020-101D2;0.314876!10732-110B3;0.920718!10049-101G4;0.717593!10698-109G5;0.195618!10437-106E5;0.581208!10417-106C3;0.858512!10035-101E8;0.849901!10171-103B9;0.00372851!10157-103A4;0.00193831!10034-101E7;0.00841555!10072-101I9;0.00300253!10199-103F1;0.00196972!10200-103F2;0.2036!10697-109G4;0.506926!10723-110A3;0.644299!10179-103C8;0.908441!10160-103A7;0.00561446!10180-103C9;0.00534157!10162-103A9;0.0127499!10021-101D3;0.0787239!10840-111E3;0.428782!10706-109H4;0.0330066!10033-101E6;0.845805!10032-101E5;0.00414653!10490-107B4;0.00236881!10439-106E7;0.157931!10022-101D4;0.476242!10176-103C5;0.807305!10469-106I1;0.00898718!10067-101I4;0.374153!10411-106B6;0.283257!10471-106I3;0.210228!10030-101E3;0.170591!10475-106I7;0.0536334!10787-110H4;0.0217371!10477-106I9;0.15992!10695-109G2;0.219033!11771-123I7;0.542202!11772-123I8;0.0561643!11773-123I9;0.000803795!10093-102C3;0.00122558!10442-106F1;0.105724!10442-106F1;0.90141!10201-103F3;0.900535!10639-108I9;0.208195!11843-124H7;0.538277!11841-124H5;0.616774!10693-109F9;0.33039!10436-106E4;0.0734275!10483-107A6;0.305712!10282-104F3;0.607165!10023-101D5;0.0170649!10066-101I3;0.119914!10065-101I2;0.0620164!10800-110I8;0.212528!10610-108F7;0.0225689!10841-111E4;0.00387426!10541-107H1;0.0518982!10842-111E5;0.0453699!10562-108A4;0.00384274!10024-101D6;0.00259082!10064-101I1;0.694077!10609-108F6;0.719316!10048-101G3;0.00108192!10781-110G7;0.444206!10181-103D1;0.000176621!10159-103A6;0.0176047!10056-101H2;0.0364025!10737-110B8;0.0173198!10025-101D7;0.0835364!10044-101F8;0.0160362!10424-106D1;0.0562878!10463-106H4;0.133416!10616-108G4;0.339816!10486-107A9;0.0984598!10062-101H8;0.517712!10202-103F4;0.991694!10158-103A5;0.185096!10441-106E9;0.00758714!10031-101E4;0.230368!10063-101H9;0.00211495!10063-101H9;0.00212104!11763-123H8;0.296905!11765-123I1;0.600376!11768-123I4;0.344002!10807-111A6;0.40037!10790-110H7;0.0446107!10798-110I6;0.0685399!10786-110H3;0.0221563!10591-108D6;0.0727496!10593-108D8;0.177982!10590-108D5;0.201589!10026-101D8;0.428877!10096-102C6;0.288898!10168-103B6;0.0575032!10154-103A1;0.00266097!10209-103G2;0.00502501!10061-101H7;0.249373!10027-101D9;0.177683!10043-101F7;0.472407!10783-110G9;0.390005!10028-101E1;0.539609!10060-101H6;0.553596!10203-103F5;0.150452!10059-101H5;0.186053!10047-101G2;0.0991667!10029-101E2;0.66269!10058-101H4;0.994294!10418-106C4;0.187363!10492-107B6;0.582272!10694-109G1;0.153452!10797-110I5;0.309323!10057-101H3;0.762508!10100-102D1;0.295636!10055-101H1;0.460948!10204-103F6;0.214258!10191-103E2;0.274607!10563-108A5;0.929902
|name=10-VGGAAACGAC,CNhs13491,BestGuess:REL_do_HM09(0.735873087466282),T:323.0(10.71%),B:2330.8(5.04%),P:1e-35
|name=10-VGGAAACGAC,CNhs13491,BestGuess:REL_do_HM09(0.735873087466282),T:323.0(10.71%),B:2330.8(5.04%),P:1e-35
|tomtom_result=REL#MA0101.1;-1;0.00065666;0.31257;0.351426;9;AGGAAACGAC;GGAAATCCCC;-!RELA#MA0107.1;-1;0.00079713;0.379434;0.351426;9;AGGAAACGAC;GGAAATTCCC;-!Su(H)#MA0085.1;4;0.0017107;0.814295;0.351426;10;AGGAAACGAC;CTGTGGGAAACGAGAT;+!STAT1#MA0137.2;0;0.0021196;1.00893;0.351426;10;AGGAAACGAC;GGAAAACGAAACTG;+!dl_2#MA0023.1;-1;0.00213075;1.01424;0.351426;9;AGGAAACGAC;GGAAAACCCC;-!GABPA#MA0062.2;1;0.00239401;1.13955;0.351426;10;AGGAAACGAC;CCGGAAGTGGC;+!dl_1#MA0022.1;0;0.00293421;1.39668;0.351426;10;AGGAAACGAC;CGGAAAAACCCC;-!ETS1#MA0098.1;0;0.00297678;1.41695;0.351426;6;AGGAAACGAC;CGGAAA;-!NFKB1#MA0105.1;0;0.00337912;1.60846;0.351979;10;AGGAAACGAC;GGGGAATCCCC;-!STAT1#MA0137.2;7;0.00372683;1.77397;0.351979;8;AGGAAACGAC;GGTTTCCGGGAAATG;-!FEV#MA0156.1;1;0.00494166;2.35223;0.424284;7;AGGAAACGAC;CAGGAAAT;+!NF-kappaB#MA0061.1;-1;0.00558631;2.65908;0.428318;9;AGGAAACGAC;GGAAATTCCC;-!YRM1#MA0438.1;1;0.00595769;2.83586;0.428318;7;AGGAAACGAC;ACGGAAAT;+!En1#MA0027.1;-1;0.00689685;3.2829;0.428318;9;AGGAAACGAC;GAACACTACTT;-!che-1#MA0260.1;-2;0.00741051;3.5274;0.428318;6;AGGAAACGAC;GAAACC;+!SPT23#MA0388.1;-2;0.00757933;3.60776;0.428318;8;AGGAAACGAC;GAAATCAA;+!SPI1#MA0080.2;0;0.0101808;4.84607;0.534179;6;AGGAAACGAC;CGGAAG;+!Eip74EF#MA0026.1;1;0.0133622;6.3604;0.622971;6;AGGAAACGAC;CCGGAAG;+!ELF5#MA0136.1;1;0.0139338;6.63247;0.622971;8;AGGAAACGAC;AAGGAAGTA;-!CEP3#MA0282.1;2;0.0148458;7.0666;0.622971;6;AGGAAACGAC;CTCGGAAA;+!GCR2#MA0305.1;0;0.0149651;7.1234;0.622971;7;AGGAAACGAC;AGGAAGC;-!id1#MA0120.1;0;0.0153981;7.3295;0.622971;10;AGGAAACGAC;CGAAAAGGAAAA;-!SPIB#MA0081.1;2;0.0158308;7.53546;0.622971;5;AGGAAACGAC;AGAGGAA;+!UPC2#MA0411.1;-2;0.0197729;9.4119;0.695575;7;AGGAAACGAC;TATACGA;+!SPI1#MA0080.2;0;0.0208944;9.94572;0.695575;7;AGGAAACGAC;AGGAAGT;+!STE12#MA0393.1;-1;0.0208944;9.94572;0.695575;7;AGGAAACGAC;TGAAACA;+
}}
}}

Latest revision as of 14:05, 7 September 2012

Full Name: 10-VGGAAACGAC,CNhs13491,BestGuess:REL_do_HM09(0.735873087466282),T:323.0(10.71%),B:2330.8(5.04%),P:1e-35

Motif matrix
POACGT
1120.80297.546104.3290.323
20.3230.323322.0310.323
318.7340.323240.95862.985
4257.4310.32364.9230.323
5322.0310.3230.3230.323
6322.0310.3230.3230.323
70.323204.4590.323117.895
80.323114.342208.0120.323
9209.95112.4040.3230.323
1053.941222.8745.8660.323

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
REL#MA0101.1-10.000656660.312570.3514269AGGAAACGACGGAAATCCCC-
RELA#MA0107.1-10.000797130.3794340.3514269AGGAAACGACGGAAATTCCC-
Su(H)#MA0085.140.00171070.8142950.35142610AGGAAACGACCTGTGGGAAACGAGAT+
STAT1#MA0137.200.00211961.008930.35142610AGGAAACGACGGAAAACGAAACTG+
dl_2#MA0023.1-10.002130751.014240.3514269AGGAAACGACGGAAAACCCC-
GABPA#MA0062.210.002394011.139550.35142610AGGAAACGACCCGGAAGTGGC+
dl_1#MA0022.100.002934211.396680.35142610AGGAAACGACCGGAAAAACCCC-
ETS1#MA0098.100.002976781.416950.3514266AGGAAACGACCGGAAA-
NFKB1#MA0105.100.003379121.608460.35197910AGGAAACGACGGGGAATCCCC-
STAT1#MA0137.270.003726831.773970.3519798AGGAAACGACGGTTTCCGGGAAATG-
FEV#MA0156.110.004941662.352230.4242847AGGAAACGACCAGGAAAT+
NF-kappaB#MA0061.1-10.005586312.659080.4283189AGGAAACGACGGAAATTCCC-
YRM1#MA0438.110.005957692.835860.4283187AGGAAACGACACGGAAAT+
En1#MA0027.1-10.006896853.28290.4283189AGGAAACGACGAACACTACTT-
che-1#MA0260.1-20.007410513.52740.4283186AGGAAACGACGAAACC+
SPT23#MA0388.1-20.007579333.607760.4283188AGGAAACGACGAAATCAA+
SPI1#MA0080.200.01018084.846070.5341796AGGAAACGACCGGAAG+
Eip74EF#MA0026.110.01336226.36040.6229716AGGAAACGACCCGGAAG+
ELF5#MA0136.110.01393386.632470.6229718AGGAAACGACAAGGAAGTA-
CEP3#MA0282.120.01484587.06660.6229716AGGAAACGACCTCGGAAA+
GCR2#MA0305.100.01496517.12340.6229717AGGAAACGACAGGAAGC-
id1#MA0120.100.01539817.32950.62297110AGGAAACGACCGAAAAGGAAAA-
SPIB#MA0081.120.01583087.535460.6229715AGGAAACGACAGAGGAA+
UPC2#MA0411.1-20.01977299.41190.6955757AGGAAACGACTATACGA+
SPI1#MA0080.200.02089449.945720.6955757AGGAAACGACAGGAAGT+
STE12#MA0393.1-10.02089449.945720.6955757AGGAAACGACTGAAACA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:10-VGGAAACGAC&oldid=2134233"