Personal tools

MCL coexpression mm9:380: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0.0463881334738607,0.410130748634561,0.443180802249334,0.241490633071222,0.228305454550766,0.277337860386656,0.194802486496893,0.0995782645255524,-0.375919370457905,-0.37403265080852,-0.320015882182026,-0.276086369046211,-0.00478103599665403,0.0128345586701506,-0.0411778412962207,0.0608866561967966,0.107158059107085,0.0551755966400236,0.0914513908429587,0.135110496359276,0.0626028125716048,0.0799446189472266,0.107352160988296,0.382676896717143,0.387717111601026,0.556730501125246,0.462233970059459,0.432480456509365,0.471039072083513,0.35219900686191,0.451525469005704,-0.228809185479353,-0.224004017497366,-0.667285654626524,0.165654813668653,0.175055684227841,0.12958579133779,0.758772537563652,0.721812139160612,0.638359274552039,0.771239936552502,0.778133854571954,0.75304351838901,0.0305341105583149,0.0493693353736755,0.0908998400394914,0.42067714121267,0.253846203965757,0.33289620882627,0.290748406753719,0.187787597344103,0.228442196870639,0.0603258065959702,-0.0202573927369114,-0.0811059683497672,0.182992953470044,0.102403255337861,0.198128235887795,0.0236479397248565,0.00545269939911218,0.0499535893916996,0.325780516129577,0.253611174383575,0.614339213421574,0.632281768384473,0.642400600120677,0.442775425768239,0.445834707630423,-0.0794582526008645,-0.0783096577276007,-0.0381773805003858,0.0869846987046867,0.0646478023986717,-0.169439595054626,-0.147932542606781,-0.0307862722012009,-0.0934476097515361,-0.121965936250159,-0.117950779129251,-0.00481994165459635,0.00639212910651982,-0.0227972720265585,0.0976853198176184,0.0357401885554795,-0.0190817934303997,-0.0600754123595527,-0.0717704790902134,-0.0414710480672398,0.0487391092074562,0.0891120986608109,0.0817266291281425,0.204285809959928,0.117906998125448,0.167201819306769,0.184973560249178,0.101238998190272,0.108515122749892,0.0657241846718224,0.148706822364716,0.160820723427551,0.148836034637228,-0.0482278852198706,-0.0205696385271583,-0.202904252709279,0.231070302492473,0.193989345066649,0.237377742964849,0.114657264740721,-0.0121953827968725,-0.00782740509927947,-0.0553324203288069,-0.0489618172373484,0.013944638315092,0.0462010318399135,-0.0618227861189511,0.0476232154311448,0.16754557397473,0.00768532120562448,0.0942174116552991,-0.0893917773869408,-0.0187785483419506,-0.0340029912296965,0.13454135248035,-0.206818641715083,-0.0854120489394264,0.249195293926771,0.083979777107788,0.212791997394293,0.116048201749419,-0.156128605634664,-0.185288673376753,-0.158733007129548,-0.154396415077385,-0.142190968993073,-0.113626789818766,-0.104709035381543,-0.104458703480485,0.086757575503219,0.273752070631469,0.0251616569150381,-0.119762351601768,-0.0380298290479205,-0.119372754832491,-0.0742413681385132,-0.179454322147806,-0.162628969850597,-0.118107036354767,-0.0705553596885952,-0.139678873612202,-0.224451082720142,-0.157212967072875,-0.0584212374216555,-0.129881965123051,-0.095819283026149,0.00276598762867586,-0.1205673022897,0.0794174481785083,0.112450885775517,0.114723694003591,-0.0386124131371069,-0.0593169659461196,-0.00792906377142867,-0.0776360260457457,-0.00998107673440345,0.00357444808649971,-0.0308950147274153,-0.0165260418393769,-0.0304665062995057,-0.0592173045157168,0.0164741702696719,-0.0200274479928464,0.0143570023234795,0.00096243372333925,0.0304076794232888,-0.198529473408521,-0.175691571210469,0.384126431653905,0.164954222679132,-0.14421233889023,-0.130885558660023,-0.117700679615007,0.0125337321090096,0.0853694022415237,0.145569972352327,0.207241614145547,0.172780727150758,0.213574211863597,0.203095490986136,0.162738281783954,0.14125869959861,0.252463330151059,0.195374451914496,-0.0225713642758734,-0.0753339658328394,-0.149537780386472,-0.0590270076803898,-0.00863545523415,-0.0494263409625554,-0.00706531018759506,0.0788527182718219,0.0880963318789117,0.11852744758387,0.152826085036188,-0.125206348843874,-0.0262328058219192,-0.0555036663992013,0.0160722275174091,0.0320291075200354,0.14472087398231,0.055505618839107,-0.0551771177789022,0.0681725242873412,-0.0629692639752037,0.0364028238714156,0.0788737064106579,0.0332136370649159,0.0850187727289319,0.0986126942851583,0.065160752400424,-0.0798633681484925,-0.149662354791799,-0.08186365247653,-0.0277116248942588,-0.0169393164024315,0.0170050558549979,-0.014413965424924,-0.0340551559982937,-0.0269968058779935,-0.0435351788095915,0.0606455178749536,0.11514162271866,0.115102007508111,0.322387376354948,0.299065156438019,0.116614625949145,0.0704529164395012,-0.0908394348499005,-0.167801165705937,-0.0103317193033321,-0.0293361745629835,-0.0963723437833412,-0.0691491192902525,-0.139552341345026,-0.10729874434696,-0.112236538535784,-0.122566820621147,-0.0644023256331772,-0.062143694307928,-0.140726516646889,-0.29221304001459,-0.0579029943231571,-0.00820437529285492,-0.136155345312219,-0.0120601707456416,0.0672968110379448,-0.0366971175346823,0.0409458545207661,0.130870448111626,0.19445655259144,0.0768489597701097,0.0535260687389807,-0.0223764224847479,0.0453021628599422,0.0458989777047571,0.0214197956732985,0.157187989241974,0.107626113725986,-0.0352129879692687,0.0491888021899883,-0.0176657458363414,-0.0477890473514212,-0.0246333623155366,-0.00823902806018075,0.081637405881451,0.0502713201333408,0.092182588529402,0.186875905010699,-0.0216609749306616,-0.125421302241787,-0.107671995952208,-0.0140111222829966,-0.0324494353692356,0.168767264347522,-0.127971437525085,0.0814838629669457,-0.00514650035961261,-0.0266895826022227,0.0616923337896849,0.004182120624693,0.0550119829383835,0.00102309669955048,0.0257710813977288,0.0116414538788602,0.360815434553845,-0.148038382769193,-0.0838341378188675,-0.00176599845712477,0.088574774844747,0.0646397046968412,0.0765480416801387,0.0287964510885383,0.14665083497095,0.19974799359797,0.14958964410673,-0.0678837760516784,-0.129736801548027,-0.0466594823061171,-0.102786120924223,-0.0230476295930871,-0.0697010227843314,-0.143116422345842,-0.0966250631911741,-0.126267864542627,-0.181448456677629,-0.119989525574549,-0.060698628874898,0.00213773800016792,-0.0216225163732326,-0.0804203530783007,-0.130929081598014,-0.133510946318827,-0.142135344945379,-0.151173454905032,-0.168788201173335,-0.188055281187249,-0.16152276654095,-0.127709207407581,-0.107774602963986,-0.092488704731599,0.063683113175126,-0.229208245410174,-0.260549683940391,-0.200988819252126,0.037397965009609,0.146512931765677,0.0306101512113958,0.0722313744365851,0.128373024070651,-0.150337160576047,-0.12086612468755,-0.128293958453141,-0.109499752667505,-0.0951844802662571,-0.0874491703020301,-0.169760136403088,-0.134465356855518,-0.124329551294056,-0.171762334635565,-0.0730420685733204,-0.172342318450168,-0.0766320778942272,-0.0891470517012712,-0.0669439532390458,-0.0100135542301468,-0.0669807789701469,-0.0664384550604064,-0.0713859960842809,-0.0611010991791139,-0.0743271135353394,-0.0520325875554243,-0.0365487385098796,-0.0432806022741263,-0.0473849728022699,-0.0669497448285737,-0.0658505249704145,-0.025999917191943,-0.0379642223109617,-0.0721131816867101,-0.108646453424285,-0.0387354115209565,-0.0206693027762494,-0.0592566841379613,-0.0619289673196139,-0.0585143647186437,-0.0394087684040466,-0.0520296804297725,-0.0341186263165889,-0.111965899457189,-0.0723918387369172,-0.0520678297457884,-0.0781758756004027,-0.0465697110197428,-0.0396211090087033,-0.0751481079914844,-0.0302653665493315,-0.077838632456695,-0.0504005215710505,0.0130554558259568,0.0329221473910862
|coexpression_dpi_cluster_scores_median=0.0463881334738607,0.410130748634561,0.443180802249334,0.241490633071222,0.228305454550766,0.277337860386656,0.194802486496893,0.0995782645255524,-0.375919370457905,-0.37403265080852,-0.320015882182026,-0.276086369046211,-0.00478103599665403,0.0128345586701506,-0.0411778412962207,0.0608866561967966,0.107158059107085,0.0551755966400236,0.0914513908429587,0.135110496359276,0.0626028125716048,0.0799446189472266,0.107352160988296,0.382676896717143,0.387717111601026,0.556730501125246,0.462233970059459,0.432480456509365,0.471039072083513,0.35219900686191,0.451525469005704,-0.228809185479353,-0.224004017497366,-0.667285654626524,0.165654813668653,0.175055684227841,0.12958579133779,0.758772537563652,0.721812139160612,0.638359274552039,0.771239936552502,0.778133854571954,0.75304351838901,0.0305341105583149,0.0493693353736755,0.0908998400394914,0.42067714121267,0.253846203965757,0.33289620882627,0.290748406753719,0.187787597344103,0.228442196870639,0.0603258065959702,-0.0202573927369114,-0.0811059683497672,0.182992953470044,0.102403255337861,0.198128235887795,0.0236479397248565,0.00545269939911218,0.0499535893916996,0.325780516129577,0.253611174383575,0.614339213421574,0.632281768384473,0.642400600120677,0.442775425768239,0.445834707630423,-0.0794582526008645,-0.0783096577276007,-0.0381773805003858,0.0869846987046867,0.0646478023986717,-0.169439595054626,-0.147932542606781,-0.0307862722012009,-0.0934476097515361,-0.121965936250159,-0.117950779129251,-0.00481994165459635,0.00639212910651982,-0.0227972720265585,0.0976853198176184,0.0357401885554795,-0.0190817934303997,-0.0600754123595527,-0.0717704790902134,-0.0414710480672398,0.0487391092074562,0.0891120986608109,0.0817266291281425,0.204285809959928,0.117906998125448,0.167201819306769,0.184973560249178,0.101238998190272,0.108515122749892,0.0657241846718224,0.148706822364716,0.160820723427551,0.148836034637228,-0.0482278852198706,-0.0205696385271583,-0.202904252709279,0.231070302492473,0.193989345066649,0.237377742964849,0.114657264740721,-0.0121953827968725,-0.00782740509927947,-0.0553324203288069,-0.0489618172373484,0.013944638315092,0.0462010318399135,-0.0618227861189511,0.0476232154311448,0.16754557397473,0.00768532120562448,0.0942174116552991,-0.0893917773869408,-0.0187785483419506,-0.0340029912296965,0.13454135248035,-0.206818641715083,-0.0854120489394264,0.249195293926771,0.083979777107788,0.212791997394293,0.116048201749419,-0.156128605634664,-0.185288673376753,-0.158733007129548,-0.154396415077385,-0.142190968993073,-0.113626789818766,-0.104709035381543,-0.104458703480485,0.086757575503219,0.273752070631469,0.0251616569150381,-0.119762351601768,-0.0380298290479205,-0.119372754832491,-0.0742413681385132,-0.179454322147806,-0.162628969850597,-0.118107036354767,-0.0705553596885952,-0.139678873612202,-0.224451082720142,-0.157212967072875,-0.0584212374216555,-0.129881965123051,-0.095819283026149,0.00276598762867586,-0.1205673022897,0.0794174481785083,0.112450885775517,0.114723694003591,-0.0386124131371069,-0.0593169659461196,-0.00792906377142867,-0.0776360260457457,-0.00998107673440345,0.00357444808649971,-0.0308950147274153,-0.0165260418393769,-0.0304665062995057,-0.0592173045157168,0.0164741702696719,-0.0200274479928464,0.0143570023234795,0.00096243372333925,0.0304076794232888,-0.198529473408521,-0.175691571210469,0.384126431653905,0.164954222679132,-0.14421233889023,-0.130885558660023,-0.117700679615007,0.0125337321090096,0.0853694022415237,0.145569972352327,0.207241614145547,0.172780727150758,0.213574211863597,0.203095490986136,0.162738281783954,0.14125869959861,0.252463330151059,0.195374451914496,-0.0225713642758734,-0.0753339658328394,-0.149537780386472,-0.0590270076803898,-0.00863545523415,-0.0494263409625554,-0.00706531018759506,0.0788527182718219,0.0880963318789117,0.11852744758387,0.152826085036188,-0.125206348843874,-0.0262328058219192,-0.0555036663992013,0.0160722275174091,0.0320291075200354,0.14472087398231,0.055505618839107,-0.0551771177789022,0.0681725242873412,-0.0629692639752037,0.0364028238714156,0.0788737064106579,0.0332136370649159,0.0850187727289319,0.0986126942851583,0.065160752400424,-0.0798633681484925,-0.149662354791799,-0.08186365247653,-0.0277116248942588,-0.0169393164024315,0.0170050558549979,-0.014413965424924,-0.0340551559982937,-0.0269968058779935,-0.0435351788095915,0.0606455178749536,0.11514162271866,0.115102007508111,0.322387376354948,0.299065156438019,0.116614625949145,0.0704529164395012,-0.0908394348499005,-0.167801165705937,-0.0103317193033321,-0.0293361745629835,-0.0963723437833412,-0.0691491192902525,-0.139552341345026,-0.10729874434696,-0.112236538535784,-0.122566820621147,-0.0644023256331772,-0.062143694307928,-0.140726516646889,-0.29221304001459,-0.0579029943231571,-0.00820437529285492,-0.136155345312219,-0.0120601707456416,0.0672968110379448,-0.0366971175346823,0.0409458545207661,0.130870448111626,0.19445655259144,0.0768489597701097,0.0535260687389807,-0.0223764224847479,0.0453021628599422,0.0458989777047571,0.0214197956732985,0.157187989241974,0.107626113725986,-0.0352129879692687,0.0491888021899883,-0.0176657458363414,-0.0477890473514212,-0.0246333623155366,-0.00823902806018075,0.081637405881451,0.0502713201333408,0.092182588529402,0.186875905010699,-0.0216609749306616,-0.125421302241787,-0.107671995952208,-0.0140111222829966,-0.0324494353692356,0.168767264347522,-0.127971437525085,0.0814838629669457,-0.00514650035961261,-0.0266895826022227,0.0616923337896849,0.004182120624693,0.0550119829383835,0.00102309669955048,0.0257710813977288,0.0116414538788602,0.360815434553845,-0.148038382769193,-0.0838341378188675,-0.00176599845712477,0.088574774844747,0.0646397046968412,0.0765480416801387,0.0287964510885383,0.14665083497095,0.19974799359797,0.14958964410673,-0.0678837760516784,-0.129736801548027,-0.0466594823061171,-0.102786120924223,-0.0230476295930871,-0.0697010227843314,-0.143116422345842,-0.0966250631911741,-0.126267864542627,-0.181448456677629,-0.119989525574549,-0.060698628874898,0.00213773800016792,-0.0216225163732326,-0.0804203530783007,-0.130929081598014,-0.133510946318827,-0.142135344945379,-0.151173454905032,-0.168788201173335,-0.188055281187249,-0.16152276654095,-0.127709207407581,-0.107774602963986,-0.092488704731599,0.063683113175126,-0.229208245410174,-0.260549683940391,-0.200988819252126,0.037397965009609,0.146512931765677,0.0306101512113958,0.0722313744365851,0.128373024070651,-0.150337160576047,-0.12086612468755,-0.128293958453141,-0.109499752667505,-0.0951844802662571,-0.0874491703020301,-0.169760136403088,-0.134465356855518,-0.124329551294056,-0.171762334635565,-0.0730420685733204,-0.172342318450168,-0.0766320778942272,-0.0891470517012712,-0.0669439532390458,-0.0100135542301468,-0.0669807789701469,-0.0664384550604064,-0.0713859960842809,-0.0611010991791139,-0.0743271135353394,-0.0520325875554243,-0.0365487385098796,-0.0432806022741263,-0.0473849728022699,-0.0669497448285737,-0.0658505249704145,-0.025999917191943,-0.0379642223109617,-0.0721131816867101,-0.108646453424285,-0.0387354115209565,-0.0206693027762494,-0.0592566841379613,-0.0619289673196139,-0.0585143647186437,-0.0394087684040466,-0.0520296804297725,-0.0341186263165889,-0.111965899457189,-0.0723918387369172,-0.0520678297457884,-0.0781758756004027,-0.0465697110197428,-0.0396211090087033,-0.0751481079914844,-0.0302653665493315,-0.077838632456695,-0.0504005215710505,0.0130554558259568,0.0329221473910862
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000066!5.38e-08!25
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!1.07e-09!31;UBERON:0005409!1.42e-09!47;UBERON:0000344!6.36e-09!15;UBERON:0004923!1.77e-08!24;UBERON:0002204!6.44e-08!32;UBERON:0001242!8.83e-08!13;UBERON:0000060!8.83e-08!13;UBERON:0001262!8.83e-08!13;UBERON:0004786!8.83e-08!13
}}
}}

Revision as of 20:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:102146246..102146347,+p1@Tmub2
Mm9::chr11:55274633..55274658,-p1@Atox1
Mm9::chr11:69805085..69805132,+p1@Gabarap
Mm9::chr19:4097369..4097386,+p4@Cdk2ap2
Mm9::chr19:4097392..4097415,+p2@Cdk2ap2
Mm9::chr2:24790668..24790735,-p1@Arrdc1
Mm9::chr3:146162669..146162728,+p3@Gm13342
p3@Gm15776
p3@Gm4356
p3@Gng5
p3@LOC100048410
Mm9::chr3:146162792..146162807,+p2@Gm13342
p2@Gm15776
p2@Gm4356
p2@Gng5
p2@LOC100048410
Mm9::chr4:43676803..43676819,+p1@ENSMUST00000056074
Mm9::chr4:63205833..63205887,+p1@Atp6v1g1
Mm9::chr5:137437951..137437999,+p1@Fis1
Mm9::chr5:8056536..8056551,+p2@Sri
Mm9::chr6:72340479..72340577,-p1@Vamp8
Mm9::chr7:148578063..148578112,+p1@Taldo1
Mm9::chr7:27963854..27963907,-p1@Rab4b
Mm9::chr7:31347956..31347972,-p@chr7:31347956..31347972
-
Mm9::chr7:3293028..3293062,+p5@Myadm
Mm9::chr7:3644508..3644634,-p1@Mboat7
Mm9::chr8:3621529..3621583,+p1@2900053A13Rik
Mm9::chr9:72887520..72887550,+p1@2310009A05Rik


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
epithelial cell5.38e-0825

Uber Anatomy
Ontology termp-valuen
intestine1.07e-0931
gastrointestinal system1.42e-0947
mucosa6.36e-0915
organ component layer1.77e-0824
musculoskeletal system6.44e-0832
intestinal mucosa8.83e-0813
anatomical wall8.83e-0813
wall of intestine8.83e-0813
gastrointestinal system mucosa8.83e-0813


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:380&oldid=2156147"