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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000181!1.75e-09!5;CL:0000417!1.75e-09!5;CL:0000668!1.75e-09!5;CL:0000412!1.75e-09!5;CL:0000182!1.75e-09!5
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!2.32e-28!22;UBERON:0007499!2.32e-28!22;UBERON:0006925!2.32e-28!22;UBERON:0009497!2.32e-28!22;UBERON:0000015!2.32e-28!22;UBERON:0002423!2.32e-28!22;UBERON:0006235!2.32e-28!22;UBERON:0008835!2.32e-28!22;UBERON:0003894!2.32e-28!22;UBERON:0004161!2.32e-28!22;UBERON:0008836!2.32e-28!22;UBERON:0009854!5.90e-27!23;UBERON:0009856!5.90e-27!23;UBERON:0002365!1.75e-24!25;UBERON:0002330!1.75e-24!25;UBERON:0005256!7.24e-12!45;UBERON:0003914!3.37e-11!47;UBERON:0005172!1.38e-10!49;UBERON:0005173!1.38e-10!49;UBERON:0002417!1.38e-10!49;UBERON:0000916!1.38e-10!49;UBERON:0003929!5.06e-09!55;UBERON:0002368!5.81e-08!60;UBERON:0003104!9.01e-08!61;UBERON:0009142!9.01e-08!61;UBERON:0001041!1.44e-07!80;UBERON:0002530!4.53e-07!65;UBERON:0000490!6.57e-07!66;UBERON:0009569!6.57e-07!66;UBERON:0000466!7.08e-07!79
}}
}}

Revision as of 21:13, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:87376436..87376447,+p@chr10:87376436..87376447
+
Mm9::chr10:87376492..87376506,+p@chr10:87376492..87376506
+
Mm9::chr10:87393432..87393442,+p@chr10:87393432..87393442
+
Mm9::chr11:77694490..77694530,-p@chr11:77694490..77694530
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Mm9::chr18:13020647..13020665,+p@chr18:13020647..13020665
+
Mm9::chr19:38192797..38192809,-p@chr19:38192797..38192809
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Mm9::chr7:20277366..20277388,-p@chr7:20277366..20277388
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Mm9::chr9:46038167..46038172,-p@chr9:46038167..46038172
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Mm9::chr9:46038198..46038210,-p@chr9:46038198..46038210
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell1.75e-095
endopolyploid cell1.75e-095
parenchymal cell1.75e-095
polyploid cell1.75e-095
hepatocyte1.75e-095

Uber Anatomy
Ontology termp-valuen
liver2.32e-2822
epithelial sac2.32e-2822
digestive gland2.32e-2822
epithelium of foregut-midgut junction2.32e-2822
anatomical boundary2.32e-2822
hepatobiliary system2.32e-2822
foregut-midgut junction2.32e-2822
hepatic diverticulum2.32e-2822
liver primordium2.32e-2822
septum transversum2.32e-2822
liver bud2.32e-2822
digestive tract diverticulum5.90e-2723
sac5.90e-2723
exocrine gland1.75e-2425
exocrine system1.75e-2425
trunk mesenchyme7.24e-1245
epithelial tube3.37e-1147
abdomen element1.38e-1049
abdominal segment element1.38e-1049
abdominal segment of trunk1.38e-1049
abdomen1.38e-1049
gut epithelium5.06e-0955
endocrine gland5.81e-0860
mesenchyme9.01e-0861
entire embryonic mesenchyme9.01e-0861
foregut1.44e-0780
gland4.53e-0765
unilaminar epithelium6.57e-0766
subdivision of trunk6.57e-0766
immaterial anatomical entity7.08e-0779


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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