FFCP PHASE1:Mm9::chr1:94601573..94601580,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|id=chr1:94601573..94601580,+ | |id=chr1:94601573..94601580,+ | ||
|ontology_enrichment_celltype=CL:0000473!5.08e-10!3;CL:0000627!5.08e-10!3;CL:0000682!5.08e-10!3;CL:0000239!2.65e-08!6;CL:0000677!2.65e-08!6;CL:0000212!2.65e-08!6;CL:0000584!2.65e-08!6;CL:0000075!4.16e-07!7 | |ontology_enrichment_celltype=CL:0000473!5.08e-10!3;CL:0000627!5.08e-10!3;CL:0000682!5.08e-10!3;CL:0000239!2.65e-08!6;CL:0000677!2.65e-08!6;CL:0000212!2.65e-08!6;CL:0000584!2.65e-08!6;CL:0000075!4.16e-07!7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000682,3.35e-23,3;CL:0000239,8.28e-20,6;CL:0000677,8.28e-20,6;CL:0000584,8.28e-20,6;CL:0000075,4.92e-17,7;CL:0000066,4.07e-14,25;CL:0002563,2.51e-13,9;CL:0002251,2.51e-13,9;CL:0000473,2.62e-10,7;CL:0002076,4.17e-08,15 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003408!1.25e-22!24;UBERON:0002370!1.46e-20!23;UBERON:0000974!1.46e-20!23;UBERON:0004807!1.46e-20!23;UBERON:0005058!1.46e-20!23;UBERON:0003351!1.46e-20!23;UBERON:0009113!1.46e-20!23;UBERON:0003295!1.46e-20!23;UBERON:0009722!1.46e-20!23;UBERON:0005562!1.46e-20!23;UBERON:0007690!1.46e-20!23;UBERON:0006562!1.40e-19!24;UBERON:0001557!1.40e-19!24;UBERON:0001042!1.40e-19!24;UBERON:0008814!1.40e-19!24;UBERON:0009145!1.40e-19!24;UBERON:0000072!4.54e-17!27;UBERON:0004177!1.10e-15!29;UBERON:0002193!4.17e-13!48;UBERON:0003929!1.11e-12!55;UBERON:0000063!1.75e-12!35;UBERON:0001004!1.55e-11!42;UBERON:0000490!3.61e-11!66;UBERON:0000065!3.18e-10!41;UBERON:0000064!3.58e-10!99;UBERON:0002465!1.77e-09!3;UBERON:0005911!2.64e-09!69;UBERON:0002390!4.69e-09!45;UBERON:0003061!4.69e-09!45;UBERON:0000344!4.72e-09!15;UBERON:0002405!7.84e-08!70;UBERON:0005057!1.19e-07!51;UBERON:0001962!2.63e-07!2;UBERON:0001961!2.63e-07!2;UBERON:0001744!2.63e-07!2;UBERON:0001007!8.76e-07!128;UBERON:0001555!8.76e-07!128;UBERON:0007026!8.76e-07!128 | |ontology_enrichment_uberon=UBERON:0003408!1.25e-22!24;UBERON:0002370!1.46e-20!23;UBERON:0000974!1.46e-20!23;UBERON:0004807!1.46e-20!23;UBERON:0005058!1.46e-20!23;UBERON:0003351!1.46e-20!23;UBERON:0009113!1.46e-20!23;UBERON:0003295!1.46e-20!23;UBERON:0009722!1.46e-20!23;UBERON:0005562!1.46e-20!23;UBERON:0007690!1.46e-20!23;UBERON:0006562!1.40e-19!24;UBERON:0001557!1.40e-19!24;UBERON:0001042!1.40e-19!24;UBERON:0008814!1.40e-19!24;UBERON:0009145!1.40e-19!24;UBERON:0000072!4.54e-17!27;UBERON:0004177!1.10e-15!29;UBERON:0002193!4.17e-13!48;UBERON:0003929!1.11e-12!55;UBERON:0000063!1.75e-12!35;UBERON:0001004!1.55e-11!42;UBERON:0000490!3.61e-11!66;UBERON:0000065!3.18e-10!41;UBERON:0000064!3.58e-10!99;UBERON:0002465!1.77e-09!3;UBERON:0005911!2.64e-09!69;UBERON:0002390!4.69e-09!45;UBERON:0003061!4.69e-09!45;UBERON:0000344!4.72e-09!15;UBERON:0002405!7.84e-08!70;UBERON:0005057!1.19e-07!51;UBERON:0001962!2.63e-07!2;UBERON:0001961!2.63e-07!2;UBERON:0001744!2.63e-07!2;UBERON:0001007!8.76e-07!128;UBERON:0001555!8.76e-07!128;UBERON:0007026!8.76e-07!128 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.30e-17,15;UBERON:0001962,2.90e-16,2;UBERON:0001961,2.90e-16,2;UBERON:0001744,2.90e-16,2;UBERON:0003350,2.51e-13,9;UBERON:0004808,2.51e-13,9;UBERON:0001277,2.51e-13,9;UBERON:0002465,3.67e-11,3;UBERON:0000485,5.84e-11,11;UBERON:0004923,6.16e-11,24;UBERON:0001242,2.57e-09,13;UBERON:0001262,2.57e-09,13;UBERON:0004786,2.57e-09,13;UBERON:0003199,7.41e-09,1 | |||
|phase1_expression=0.160148847104794,3.48975407639361,5.91499011206397,0,0,5.20425742926858,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9193407830264,8.48814339948529,4.59385571292016,9.90752591165872,9.26526300549323,0,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0.616265742988964,0.25984164595559,0.716106782669926,0.79472541912506,1.68273629327956,0.738447635872886,0.908698049533329,0.533447646584999,0.705783295957884,0.974578807397524,1.44317762460494,1.28564592399726,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0.192906610981141,0,0,0,0,0,0 | |phase1_expression=0.160148847104794,3.48975407639361,5.91499011206397,0,0,5.20425742926858,2.56973904655078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9193407830264,8.48814339948529,4.59385571292016,9.90752591165872,9.26526300549323,0,0,0.886922042621219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0.202725215290164,0.616265742988964,0.25984164595559,0.716106782669926,0.79472541912506,1.68273629327956,0.738447635872886,0.908698049533329,0.533447646584999,0.705783295957884,0.974578807397524,1.44317762460494,1.28564592399726,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0.118635018124174,0,0,0,0.192906610981141,0,0,0,0,0,0 | ||
|short_description=p@chr1:94601573..94601580,+ | |short_description=p@chr1:94601573..94601580,+ | ||
}} | }} |
Revision as of 16:39, 14 November 2012
Short description: | p@chr1:94601573..94601580, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:94601573..94601580, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 3.35e-23 | 3 |
brush border epithelial cell | 8.28e-20 | 6 |
gut absorptive cell | 8.28e-20 | 6 |
enterocyte | 8.28e-20 | 6 |
columnar/cuboidal epithelial cell | 4.92e-17 | 7 |
epithelial cell | 4.07e-14 | 25 |
intestinal epithelial cell | 2.51e-13 | 9 |
epithelial cell of alimentary canal | 2.51e-13 | 9 |
defensive cell | 2.62e-10 | 7 |
endo-epithelial cell | 4.17e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.30e-17 | 15 |
gut-associated lymphoid tissue | 2.90e-16 | 2 |
mucosa-associated lymphoid tissue | 2.90e-16 | 2 |
lymphoid tissue | 2.90e-16 | 2 |
epithelium of mucosa | 2.51e-13 | 9 |
gastrointestinal system epithelium | 2.51e-13 | 9 |
intestinal epithelium | 2.51e-13 | 9 |
lymphoid system | 3.67e-11 | 3 |
simple columnar epithelium | 5.84e-11 | 11 |
organ component layer | 6.16e-11 | 24 |
intestinal mucosa | 2.57e-09 | 13 |
wall of intestine | 2.57e-09 | 13 |
gastrointestinal system mucosa | 2.57e-09 | 13 |
egg chamber | 7.41e-09 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.