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de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by [http://autosome.ru/macroape/ MacroApe] | de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by [http://autosome.ru/macroape/ MacroApe] | ||
</td> | </td> | ||
<td> | <td> <ul><li>[[MacroAPE_1083:FOXD1_si|FOXD1_si]]</li></ul> </td> | ||
<td> | <td> | ||
[[Browse_MacroAPE|MacroAPE]] | [[Browse_MacroAPE|MacroAPE]] | ||
</td> | </td> | ||
</tr> | </tr> | ||
<tr> | <tr> | ||
<td>''' | <td>'''Transcription factors'''</td> | ||
<td> | <td> | ||
Transcription factors. | |||
</td> | </td> | ||
<td> | <td> <ul><li>[[EntrezGene:6657|SOX2]]</li></ul> | ||
</td> | </td> | ||
<td> | <td> | ||
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</tr> | </tr> | ||
<tr> | <tr> | ||
<td>''' | <td>'''Sample classifications'''</td> | ||
<td> | <td> | ||
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). | |||
</td> | </td> | ||
<td> <ul><li>[[CL:0000192|smooth muscle cell]]</li></ul> </td> | |||
<td> | <td> | ||
[[FF_Ontology_terms_list|FANTOM5 (FF)]] | [[FF_Ontology_terms_list|FANTOM5 (FF)]] | ||
Revision as of 19:53, 22 November 2012
FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project
| Gene Search | |||
|---|---|---|---|
| Examples | Browse | ||
| Samples | Details of profiled samples (incl. primary cells, cell lines, and tissues) | ||
| Co-expression |
CAGE peaks (TSS regions) are grouped based on expression, by using MCL |
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| MOTIFs |
de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by MacroApe |
||
| Transcription factors |
Transcription factors. |
||
| Sample classifications |
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON). |
||
