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CL:0000192

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Name:smooth muscle cell
Namespace:FANTOM
Definition:"A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [MESH:A.11.620.520, MESH:D032389, PMID:9315361]
Xrefs:
links:

BTO:0004576

FMA:14072
Synonyms: "myocytes, smooth muscle" EXACT [MESH:D032389]
"non-striated muscle cell" EXACT []
"SMCs" EXACT [PMID:9315361]
"smooth muscle fiber" EXACT []
Alt_id: CL:0000191


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0008000(non-striated muscle cell),CL:0008007(visceral muscle cell)
develops_from:CL:0000514(smooth muscle myoblast)



Children


is a:CL:0000359 (vascular associated smooth muscle cell),CL:0002504 (enteric smooth muscle cell),CL:0002597 (smooth muscle cell of bladder),CL:0002598 (bronchial smooth muscle cell),CL:0002599 (smooth muscle cell of the esophagus),CL:0002600 (smooth muscle cell of trachea),CL:0002601 (uterine smooth muscle cell),CL:1000487 (smooth muscle cell of prostate)
derives from:FF:0000167 (smooth muscle cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000192 (smooth muscle cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0+, p@chr17:87574327..87574332
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0p5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:178190171..178190178, +
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14802633..14802637, -
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_dd44eebcd849e13d17ead1f28e6e8ee0p5@Adamts2
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:14802633..14802637, -
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr8:69228447..69228492, +
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_dd44eebcd849e13d17ead1f28e6e8ee0p@chr2:112043522..112043530, -
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_dd44eebcd849e13d17ead1f28e6e8ee0p@chrX:160839744..160839754, +
9.37e-70FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11p@chr6:53359400..53359406, +
9.37e-70FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_4b03f63a090e767018f803386697dd11+, p@chr6:53359400..53359406
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_0aaa2917831255f58d49f25f052c9873p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_0aaa2917831255f58d49f25f052c9873p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873p6@Npy1r
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_0aaa2917831255f58d49f25f052c9873p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_0aaa2917831255f58d49f25f052c9873p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_0aaa2917831255f58d49f25f052c9873p@chr11:118164535..118164544, -
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86beep1@ENSMUST00000150529
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_50fb5f288f5ca571e58f788349f86beep1@ENSMUST00000150529
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391p12@Gpr39
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_24e57cb8e99c9c35a9a56b6be3749391p12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391-, p@chrX:160811352..160811356
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391p8@Vit
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_24e57cb8e99c9c35a9a56b6be3749391p8@Vit
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_24e57cb8e99c9c35a9a56b6be3749391p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_24e57cb8e99c9c35a9a56b6be3749391p@chr10:96946110..96946113, +
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp5@Npy1r
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp5@Npy1r
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67598037..67598049, -
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr17:29227828..29227839, -
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67821185..67821217, -
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr2:113589030..113589077, -
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_6d6050f18e11db5e6ad9cd5aa5b18a3cp4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_6d6050f18e11db5e6ad9cd5aa5b18a3cp@chr10:67821185..67821217, -
6.91e-53FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578p@chr11:102661517..102661541, -
6.91e-53FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_0d9a8634fea897b0035bf9915fe27578p@chr11:102661517..102661541, -
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67p11@Svep1
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_013dc3abf568aaac1cc9b9e622355b67p11@Svep1
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_662f25b7a9e29e6a939bc25e610d52c1p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6p5@Phlda3
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_bbc18b1a34f62ef81543b7b3e23112a6p5@Phlda3
2.52e-52FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5p@chr4:74703497..74703511, +
2.52e-52FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_6302d5152884ff54082f7165ea5a5ca5p@chr4:74703497..74703511, +
5.51e-52FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855p@chr2:65009852..65009866, -
5.51e-52FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_79016b64a55830bc0163dacc3b5b8855p@chr2:65009852..65009866, -
5.68e-52FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76fp@chr4:7846444..7846449, -
5.68e-52FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_3d781c85e3d3b760f6338e6e7bc6b76fp@chr4:7846444..7846449, -
2.41e-47FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697p@chr2:134548872..134548879, -
2.41e-47FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_6b8525e31225e32011389c2221f14697p@chr2:134548872..134548879, -
2.91e-46FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6p@chr4:74703963..74703975, +
2.91e-46FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_d815ef8583cd71c076d39b0c40d078d6p@chr4:74703963..74703975, +
1.18e-44FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006p10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006p@chr17:14813242..14813246, -
1.18e-44FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_bf069025b80258c733dbb19a2a4e7006p10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_bf069025b80258c733dbb19a2a4e7006p@chr11:86417559..86417568, +
1.18e-44FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_bf069025b80258c733dbb19a2a4e7006p@chr13:119579287..119579292, +
1.18e-44FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006p@chrX:160838683..160838694, +
1.18e-44FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_bf069025b80258c733dbb19a2a4e7006p@chr17:14813242..14813246, -
1.18e-44FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006p@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_bf069025b80258c733dbb19a2a4e7006p@chrX:160838683..160838694, +
1.18e-44FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_bf069025b80258c733dbb19a2a4e7006p@chr2:178190136..178190151, +
1.66e-44FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_5a7182626c782173895b1888236af834p9@Fgf10
1.66e-44FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_5a7182626c782173895b1888236af834p9@Fgf10