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MCL coexpression mm9:104: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!1.33e-18!31;UBERON:0005409!5.58e-15!47;UBERON:0000331!1.42e-10!3;UBERON:0002116!1.42e-10!3;UBERON:0001204!1.42e-10!3;UBERON:0001168!1.42e-10!3;UBERON:0001153!4.39e-09!1;UBERON:0001045!4.39e-09!1;UBERON:0002108!3.73e-08!4;UBERON:0001007!9.36e-07!116;UBERON:0001555!9.36e-07!116;UBERON:0007026!9.36e-07!116
|ontology_enrichment_uberon=UBERON:0000160!1.33e-18!31;UBERON:0005409!5.58e-15!47;UBERON:0000331!1.42e-10!3;UBERON:0002116!1.42e-10!3;UBERON:0001204!1.42e-10!3;UBERON:0001168!1.42e-10!3;UBERON:0001153!4.39e-09!1;UBERON:0001045!4.39e-09!1;UBERON:0002108!3.73e-08!4;UBERON:0001007!9.36e-07!116;UBERON:0001555!9.36e-07!116;UBERON:0007026!9.36e-07!116
|tfbs_overrepresentation_for_novel_motifs=0.0153203,0.169559,0.0095596,1.4304,0.293011,0.992813,0.0410009,0.728771,0.441684,0.0459246,0.132137,0.470421,0.0728755,0.0467364,0.363968,0,0.0820509,0.476037,0.853399,0.219387,0.676697,0.0741,0.110495,0.656819,0.028473,0.0614847,0.183329,0.0172094,0.035259,0.163188,0.162823,0.346968,0.116794,1.09857,0.000216455,0.0345086,0.0173579,0.0855816,0.302061,0.129338,0.277116,0.0420946,0.0865053,0.373044,0.040311,0.0586525,0.0446271,0.0567557,1.9058,0.275904,0.188302,0.0257031,0.135283,0.282927,1.55229,0.379169,0.307018,0.0780202,0.203688,0.0148507,0.134892,0.0282754,0.527027,0.0669279,0.0173462,0.0887848,1.4647,0.386753,0.310045,0.278995,0.0405242,0.78948,0.000201472,0.340248,0.0130462,0.714393,0.451962,0.115012,0.122463,1.88739,1.72577,0.0921041,2.63528,0.0221805,0.0601771,3.354e-10,0.440081,1.20428,0.129475,0.51773,0.193879,0.0618032,0.656021,0.31724,0.0013358,0.382099,0.278306,0.371282,0.00873051,0.273075,1.65772,0.346538,0.0765169,0.369608,0.0156358,0.000476368,0.107418,0.335996,0.0152146,2.03812e-05,0.0341914,0.266288,0.398725,0.0673288,0.198081,0.125963,0.000474781,0.070782,0.405052,0.0311245,0.106693,0.524942,0.143074,0.653122,0.654712,0.125084,0.350999,0.039673,0.153696,0.235391,1.8786,0.323464,0.428369,0.251591,0.211203,1.83795,0.0430688,0.829909,0.181868,0.845649,0.49117,0.475357,0.157418,1.92532,0.0690863,0.0926779,1.34935,0.808922,1.1829,0.00205095,0.128231,5.98843e-07,0.595976,0.113406,0.057117,0.378894,0.318996,0.0494856,0.340094,0.00120129,1.04847,1.24258,0.547721,0.0693587,0.0674334,0.236608,0.405234,0.671112,0.000142385
}}
}}

Revision as of 17:48, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:114659747..114659758,-p@chr10:114659747..114659758
-
Mm9::chr10:114659760..114659768,-p@chr10:114659760..114659768
-
Mm9::chr10:127196790..127196802,+p2@Rdh1
Mm9::chr10:21291553..21291560,+p@chr10:21291553..21291560
+
Mm9::chr11:115628115..115628135,+p3@2310067B10Rik
Mm9::chr11:22635514..22635519,+p@chr11:22635514..22635519
+
Mm9::chr11:31679459..31679503,-p@chr11:31679459..31679503
-
Mm9::chr11:4716658..4716667,-p12@Nf2
Mm9::chr11:58234605..58234620,+p1@1810065E05Rik
Mm9::chr11:75774496..75774521,+p@chr11:75774496..75774521
+
Mm9::chr11:95780205..95780215,+p@chr11:95780205..95780215
+
Mm9::chr11:96125205..96125225,+p@chr11:96125205..96125225
+
Mm9::chr11:96787464..96787470,+p@chr11:96787464..96787470
+
Mm9::chr12:32123074..32123092,+p1@Slc26a3
Mm9::chr12:80009362..80009374,-p@chr12:80009362..80009374
-
Mm9::chr13:63252894..63252907,+p@chr13:63252894..63252907
+
Mm9::chr13:96025077..96025093,-p@chr13:96025077..96025093
-
Mm9::chr13:99462670..99462680,-p@chr13:99462670..99462680
-
Mm9::chr13:99462714..99462742,-p@chr13:99462714..99462742
-
Mm9::chr13:99464761..99464774,-p3@Tmem171
Mm9::chr13:99464848..99464860,-p5@Tmem171
Mm9::chr13:99465515..99465533,-p@chr13:99465515..99465533
-
Mm9::chr14:37915424..37915436,-p@chr14:37915424..37915436
-
Mm9::chr14:37923273..37923292,-p1@2610528A11Rik
Mm9::chr14:77221547..77221560,-p@chr14:77221547..77221560
-
Mm9::chr14:99625384..99625393,+p@chr14:99625384..99625393
+
Mm9::chr15:78240340..78240352,+p4@Mpst
Mm9::chr15:78240384..78240468,+p1@Mpst
Mm9::chr16:36694042..36694051,+p4@Ildr1
Mm9::chr16:36694058..36694086,+p2@Ildr1
Mm9::chr16:36694110..36694123,+p3@Ildr1
Mm9::chr16:36694129..36694148,+p1@Ildr1
Mm9::chr16:36708316..36708325,+p@chr16:36708316..36708325
+
Mm9::chr16:48817074..48817089,+p1@Retnlb
Mm9::chr17:26253737..26253748,+p@chr17:26253737..26253748
+
Mm9::chr17:31456802..31456827,+p@chr17:31456802..31456827
+
Mm9::chr17:35051190..35051221,+p3@Slc44a4
Mm9::chr18:36550576..36550580,+p@chr18:36550576..36550580
+
Mm9::chr18:61355852..61355885,-p@chr18:61355852..61355885
-
Mm9::chr18:61356018..61356052,-p@chr18:61356018..61356052
-
Mm9::chr18:61357359..61357371,-p@chr18:61357359..61357371
-
Mm9::chr18:61416448..61416454,+p@chr18:61416448..61416454
+
Mm9::chr19:39085628..39085634,+p@chr19:39085628..39085634
+
Mm9::chr19:39097868..39097878,+p@chr19:39097868..39097878
+
Mm9::chr19:39105844..39105851,+p@chr19:39105844..39105851
+
Mm9::chr19:39110122..39110134,+p@chr19:39110122..39110134
+
Mm9::chr19:39111028..39111033,+p@chr19:39111028..39111033
+
Mm9::chr19:39111527..39111528,+p@chr19:39111527..39111528
+
Mm9::chr19:39116519..39116557,+p@chr19:39116519..39116557
+
Mm9::chr19:39116554..39116558,-p@chr19:39116554..39116558
-
Mm9::chr19:39116764..39116776,+p@chr19:39116764..39116776
+
Mm9::chr19:44043159..44043188,-p3@Cpn1
Mm9::chr1:154920824..154920859,+p@chr1:154920824..154920859
+
Mm9::chr1:175349305..175349344,+p2@Aim2
Mm9::chr1:175349351..175349362,+p5@Aim2
Mm9::chr1:55948913..55948951,+p@chr1:55948913..55948951
+
Mm9::chr1:56076718..56076723,+p@chr1:56076718..56076723
+
Mm9::chr1:57031344..57031364,-p@chr1:57031344..57031364
-
Mm9::chr1:57035356..57035368,-p@chr1:57035356..57035368
-
Mm9::chr1:90083162..90083165,+p3@ENSMUST00000120438
Mm9::chr2:126758729..126758826,-p1@2010106G01Rik
Mm9::chr2:126758858..126758869,-p4@2010106G01Rik
Mm9::chr2:126767724..126767729,-p@chr2:126767724..126767729
-
Mm9::chr2:154890790..154890803,-p@chr2:154890790..154890803
-
Mm9::chr2:32455218..32455246,+p3@St6galnac6
Mm9::chr3:104327693..104327712,-p@chr3:104327693..104327712
-
Mm9::chr3:122588196..122588204,+p@chr3:122588196..122588204
+
Mm9::chr3:14704603..14704612,+p@chr3:14704603..14704612
+
Mm9::chr3:14766412..14766419,+p@chr3:14766412..14766419
+
Mm9::chr3:14766458..14766467,+p@chr3:14766458..14766467
+
Mm9::chr3:14766492..14766507,-p@chr3:14766492..14766507
-
Mm9::chr3:14766570..14766597,-p@chr3:14766570..14766597
-
Mm9::chr3:14766610..14766616,-p@chr3:14766610..14766616
-
Mm9::chr3:14767480..14767489,+p@chr3:14767480..14767489
+
Mm9::chr3:14767495..14767497,-p@chr3:14767495..14767497
-
Mm9::chr3:14769212..14769219,-p@chr3:14769212..14769219
-
Mm9::chr3:14776219..14776238,+p@chr3:14776219..14776238
+
Mm9::chr3:14776254..14776276,-p@chr3:14776254..14776276
-
Mm9::chr3:14778452..14778466,-p1@Car1
Mm9::chr3:52453888..52453895,+p@chr3:52453888..52453895
+
Mm9::chr3:98026071..98026087,+p1@Reg4
Mm9::chr3:98697132..98697168,-p1@Hao2
Mm9::chr4:104783201..104783208,-p@chr4:104783201..104783208
-
Mm9::chr4:106925932..106925961,-p2@Lrrc42
Mm9::chr4:11321033..11321062,-p@chr4:11321033..11321062
-
Mm9::chr5:137913454..137913467,-p@chr5:137913454..137913467
-
Mm9::chr5:148117025..148117035,-p@chr5:148117025..148117035
-
Mm9::chr5:65819593..65819604,-p7@Ugdh
Mm9::chr5:8728205..8728209,+p@chr5:8728205..8728209
+
Mm9::chr5:93348648..93348692,+p@chr5:93348648..93348692
+
Mm9::chr6:135296425..135296448,-p@chr6:135296425..135296448
-
Mm9::chr6:135296469..135296491,-p@chr6:135296469..135296491
-
Mm9::chr6:135296515..135296529,-p@chr6:135296515..135296529
-
Mm9::chr6:52168685..52168715,-p9@Hoxa7
Mm9::chr6:52180946..52180949,-p3@ENSMUST00000174115
Mm9::chr6:71992538..71992554,-p@chr6:71992538..71992554
-
Mm9::chr6:71992563..71992566,-p@chr6:71992563..71992566
-
Mm9::chr6:72579278..72579298,+p1@Gm15401
Mm9::chr6:72586238..72586252,+p2@ENSMUST00000101278
p2@uc009cjb.1
Mm9::chr6:72586262..72586275,+p4@ENSMUST00000101278
p4@uc009cjb.1
Mm9::chr6:72586282..72586315,+p1@ENSMUST00000101278
p1@uc009cjb.1
Mm9::chr6:72586321..72586326,+p6@ENSMUST00000101278
p6@uc009cjb.1
Mm9::chr7:105310687..105310700,-p6@Capn5
Mm9::chr7:105564132..105564135,-p@chr7:105564132..105564135
-
Mm9::chr7:136913352..136913382,-p@chr7:136913352..136913382
-
Mm9::chr7:25378919..25378933,+p@chr7:25378919..25378933
+
Mm9::chr7:26248501..26248536,-p@chr7:26248501..26248536
-
Mm9::chr7:26248719..26248737,-p@chr7:26248719..26248737
-
Mm9::chr7:26249284..26249287,-p@chr7:26249284..26249287
-
Mm9::chr7:26251418..26251441,-p@chr7:26251418..26251441
-
Mm9::chr7:26256897..26256910,+p@chr7:26256897..26256910
+
Mm9::chr7:26256939..26256990,-p@chr7:26256939..26256990
-
Mm9::chr7:26256992..26257016,-p@chr7:26256992..26257016
-
Mm9::chr7:26257039..26257042,-p@chr7:26257039..26257042
-
Mm9::chr7:26261571..26261582,-p@chr7:26261571..26261582
-
Mm9::chr7:26261715..26261720,-p@chr7:26261715..26261720
-
Mm9::chr8:116378785..116378794,-p@chr8:116378785..116378794
-
Mm9::chr8:116378817..116378824,-p@chr8:116378817..116378824
-
Mm9::chr8:116378833..116378842,-p@chr8:116378833..116378842
-
Mm9::chr8:116378848..116378855,-p@chr8:116378848..116378855
-
Mm9::chr8:25590534..25590580,+p@chr8:25590534..25590580
+
Mm9::chr9:37062988..37063004,-p1@Slc37a2
Mm9::chr9:64062440..64062445,-p@chr9:64062440..64062445
-
Mm9::chr9:69885758..69885767,-p@chr9:69885758..69885767
-
Mm9::chr9:69885800..69885825,-p1@Gcnt3
Mm9::chr9:69885850..69885859,-p4@Gcnt3
Mm9::chr9:69885882..69885900,-p3@Gcnt3
Mm9::chr9:69885903..69885916,-p2@Gcnt3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008272sulfate transport0.0398153728154276
GO:0016614oxidoreductase activity, acting on CH-OH group of donors0.0398153728154276
GO:0004184lysine carboxypeptidase activity0.0398153728154276
GO:00167843-mercaptopyruvate sulfurtransferase activity0.0398153728154276
GO:0015169glycerol-3-phosphate transmembrane transporter activity0.0398153728154276
GO:0006127glycerophosphate shuttle0.0398153728154276
GO:0015794glycerol-3-phosphate transport0.0398153728154276
GO:0003979UDP-glucose 6-dehydrogenase activity0.0398153728154276
GO:0015168glycerol transmembrane transporter activity0.0398153728154276
GO:0015665alcohol transmembrane transporter activity0.0398153728154276
GO:0015793glycerol transport0.0398153728154276
GO:0015166polyol transmembrane transporter activity0.0398153728154276



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine1.33e-1831
gastrointestinal system5.58e-1547
ileal mucosa1.42e-103
ileum1.42e-103
mucosa of small intestine1.42e-103
wall of small intestine1.42e-103
caecum4.39e-091
midgut4.39e-091
small intestine3.73e-084
digestive system9.36e-07116
digestive tract9.36e-07116
primitive gut9.36e-07116


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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