Personal tools

MCL coexpression mm9:824: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 7: Line 7:
|ontology_enrichment_uberon=UBERON:0009854!5.61e-12!23;UBERON:0009856!5.61e-12!23;UBERON:0002107!1.40e-11!22;UBERON:0007499!1.40e-11!22;UBERON:0006925!1.40e-11!22;UBERON:0009497!1.40e-11!22;UBERON:0000015!1.40e-11!22;UBERON:0002423!1.40e-11!22;UBERON:0006235!1.40e-11!22;UBERON:0008835!1.40e-11!22;UBERON:0003894!1.40e-11!22;UBERON:0004161!1.40e-11!22;UBERON:0008836!1.40e-11!22;UBERON:0002365!1.59e-11!25;UBERON:0002330!1.59e-11!25;UBERON:0003914!1.72e-08!47
|ontology_enrichment_uberon=UBERON:0009854!5.61e-12!23;UBERON:0009856!5.61e-12!23;UBERON:0002107!1.40e-11!22;UBERON:0007499!1.40e-11!22;UBERON:0006925!1.40e-11!22;UBERON:0009497!1.40e-11!22;UBERON:0000015!1.40e-11!22;UBERON:0002423!1.40e-11!22;UBERON:0006235!1.40e-11!22;UBERON:0008835!1.40e-11!22;UBERON:0003894!1.40e-11!22;UBERON:0004161!1.40e-11!22;UBERON:0008836!1.40e-11!22;UBERON:0002365!1.59e-11!25;UBERON:0002330!1.59e-11!25;UBERON:0003914!1.72e-08!47
|tfbs_overrepresentation_for_novel_motifs=0.354643,2.35624,0.879518,0.394491,0.645379,0.40827,0.495658,0.146465,0.468136,0.573183,0.453212,0.484001,0.146657,0.507558,0.24249,0,0.696644,0.22065,0.419123,0.902262,0.802917,0.403891,0.50668,0.226287,0.337218,0.534339,0.801525,0.428336,0.268347,0.0963992,0.414842,0.796599,1.82817,0.364174,1.26347,0.281474,0.210533,0.480503,0.559915,0.167387,0.224094,1.07677,0.663794,0.684206,0.158271,0.383899,0.618203,1.12809,0.314152,0.271021,0.679429,0.560572,1.05886,0.937018,0.954342,0.514504,0.279148,0.471658,0.770972,0.512521,0.776777,0.569793,0.492158,0.668331,0.525334,0.708248,1.08987,1.43807,0.772155,1.29123,0.31262,0.151245,0.191038,0.987652,0.748687,0.710896,1.20707,0.607043,0.759798,0.299972,0.152219,0.713779,0.568383,0.14134,0.873141,0.0800961,0.092683,0.319367,0.623015,1.60001,1.15927,0.878077,0.809272,0.232894,0.188213,0.17334,0.444003,1.90157,0.618454,0.278788,0.210602,0.796322,0.919715,0.680015,0.678976,1.07585,0.737915,0.439611,0.30446,0.297733,0.348012,0.921485,0.301014,0.458194,1.16629,0.222515,2.56482,0.398075,0.697928,1.12703,0.993019,0.647706,0.536114,0.606154,1.22022,3.00853,0.503569,0.802564,1.08836,0.663857,0.90286,0.387557,1.05894,0.527782,1.18781,0.398576,0.362565,0.421136,1.13883,1.96797,1.5682,1.09456,0.547855,0.806961,0.672593,0.420221,0.621266,1.92834,0.956381,1.2115,0.665499,0.161645,0.938577,0.527659,0.526881,1.01974,0.561556,0.253271,0.352329,0.950885,1.1483,0.872292,0.763895,0.345891,0.669337,0.519673,0.209556,0.482466,0.976805
|tfbs_overrepresentation_for_novel_motifs=0.354643,2.35624,0.879518,0.394491,0.645379,0.40827,0.495658,0.146465,0.468136,0.573183,0.453212,0.484001,0.146657,0.507558,0.24249,0,0.696644,0.22065,0.419123,0.902262,0.802917,0.403891,0.50668,0.226287,0.337218,0.534339,0.801525,0.428336,0.268347,0.0963992,0.414842,0.796599,1.82817,0.364174,1.26347,0.281474,0.210533,0.480503,0.559915,0.167387,0.224094,1.07677,0.663794,0.684206,0.158271,0.383899,0.618203,1.12809,0.314152,0.271021,0.679429,0.560572,1.05886,0.937018,0.954342,0.514504,0.279148,0.471658,0.770972,0.512521,0.776777,0.569793,0.492158,0.668331,0.525334,0.708248,1.08987,1.43807,0.772155,1.29123,0.31262,0.151245,0.191038,0.987652,0.748687,0.710896,1.20707,0.607043,0.759798,0.299972,0.152219,0.713779,0.568383,0.14134,0.873141,0.0800961,0.092683,0.319367,0.623015,1.60001,1.15927,0.878077,0.809272,0.232894,0.188213,0.17334,0.444003,1.90157,0.618454,0.278788,0.210602,0.796322,0.919715,0.680015,0.678976,1.07585,0.737915,0.439611,0.30446,0.297733,0.348012,0.921485,0.301014,0.458194,1.16629,0.222515,2.56482,0.398075,0.697928,1.12703,0.993019,0.647706,0.536114,0.606154,1.22022,3.00853,0.503569,0.802564,1.08836,0.663857,0.90286,0.387557,1.05894,0.527782,1.18781,0.398576,0.362565,0.421136,1.13883,1.96797,1.5682,1.09456,0.547855,0.806961,0.672593,0.420221,0.621266,1.92834,0.956381,1.2115,0.665499,0.161645,0.938577,0.527659,0.526881,1.01974,0.561556,0.253271,0.352329,0.950885,1.1483,0.872292,0.763895,0.345891,0.669337,0.519673,0.209556,0.482466,0.976805
|tfbs_overrepresentation_jaspar=MA0003.1;0.662116,MA0004.1;0.394951,MA0006.1;0.670874,MA0007.1;0.38073,MA0009.1;0.82278,MA0014.1;0.67203,MA0017.1;0.26239,MA0019.1;0.642876,MA0024.1;0.779446,MA0025.1;1.05446,MA0027.1;2.46647,MA0028.1;1.28203,MA0029.1;0.757957,MA0030.1;0.764448,MA0031.1;0.729293,MA0038.1;1.32237,MA0040.1;0.835181,MA0041.1;0.323687,MA0042.1;0.311486,MA0043.1;0.918718,MA0046.1;0.858391,MA0048.1;2.03411,MA0050.1;0.431976,MA0051.1;0.542972,MA0052.1;0.84317,MA0055.1;2.847,MA0056.1;0,MA0057.1;0.934348,MA0058.1;0.305206,MA0059.1;0.316585,MA0060.1;2.21405,MA0061.1;0.56663,MA0063.1;0,MA0066.1;0.523573,MA0067.1;1.16502,MA0068.1;0.077274,MA0069.1;0.843506,MA0070.1;0.833895,MA0071.1;0.431174,MA0072.1;0.825495,MA0073.1;0.00359098,MA0074.1;0.488775,MA0076.1;1.40007,MA0077.1;0.804033,MA0078.1;0.575205,MA0081.1;0.338098,MA0083.1;0.917931,MA0084.1;1.49188,MA0087.1;0.87515,MA0088.1;0.413524,MA0089.1;0,MA0090.1;0.362551,MA0091.1;0.407455,MA0092.1;0.362847,MA0093.1;0.2553,MA0095.1;0,MA0098.1;0,MA0100.1;0.477594,MA0101.1;0.324888,MA0103.1;0.748482,MA0105.1;0.720048,MA0106.1;1.42499,MA0107.1;0.266586,MA0108.2;0.665343,MA0109.1;0,MA0111.1;0.375908,MA0113.1;0.555251,MA0114.1;0.19245,MA0115.1;0.921497,MA0116.1;0.238371,MA0117.1;0.88947,MA0119.1;0.325434,MA0122.1;0.909168,MA0124.1;1.11203,MA0125.1;1.03833,MA0130.1;0,MA0131.1;1.54167,MA0132.1;0,MA0133.1;0,MA0135.1;0.954884,MA0136.1;0.508047,MA0139.1;0.867077,MA0140.1;0.477483,MA0141.1;2.20026,MA0142.1;0.714976,MA0143.1;0.571221,MA0144.1;0.195095,MA0145.1;0.442138,MA0146.1;2.82741,MA0147.1;0.205697,MA0148.1;0.410398,MA0149.1;0.330018,MA0062.2;0.365726,MA0035.2;0.482026,MA0039.2;0.618828,MA0138.2;1.52535,MA0002.2;0.145685,MA0137.2;0.287486,MA0104.2;0.157347,MA0047.2;0.533516,MA0112.2;0.771888,MA0065.2;0.200864,MA0150.1;0.380623,MA0151.1;0,MA0152.1;0.53362,MA0153.1;0.971406,MA0154.1;2.62783,MA0155.1;0.490492,MA0156.1;0.278949,MA0157.1;0.683365,MA0158.1;0,MA0159.1;0.214506,MA0160.1;1.06259,MA0161.1;0,MA0162.1;0.176565,MA0163.1;0.820439,MA0164.1;0.508398,MA0080.2;0.267388,MA0018.2;0.51781,MA0099.2;0.624421,MA0079.2;0.13055,MA0102.2;1.5442,MA0258.1;0.180934,MA0259.1;0.571417,MA0442.1;0
}}
}}

Revision as of 12:22, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr15:54784208..54784249,-p@chr15:54784208..54784249
-
Mm9::chr15:85566241..85566253,+p6@Ppara
Mm9::chr15:85566537..85566552,+p2@Ppara
Mm9::chr1:107253294..107253345,+p@chr1:107253294..107253345
+
Mm9::chr2:11627017..11627028,+p4@Il15ra
Mm9::chr2:11627064..11627075,+p6@Il15ra
Mm9::chr3:116672432..116672441,-p@chr3:116672432..116672441
-
Mm9::chr8:72736150..72736164,-p2@Slc25a42
Mm9::chr8:72736167..72736199,-p1@Slc25a42


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
digestive tract diverticulum5.61e-1223
sac5.61e-1223
liver1.40e-1122
epithelial sac1.40e-1122
digestive gland1.40e-1122
epithelium of foregut-midgut junction1.40e-1122
anatomical boundary1.40e-1122
hepatobiliary system1.40e-1122
foregut-midgut junction1.40e-1122
hepatic diverticulum1.40e-1122
liver primordium1.40e-1122
septum transversum1.40e-1122
liver bud1.40e-1122
exocrine gland1.59e-1125
exocrine system1.59e-1125
epithelial tube1.72e-0847


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.662116
MA0004.10.394951
MA0006.10.670874
MA0007.10.38073
MA0009.10.82278
MA0014.10.67203
MA0017.10.26239
MA0019.10.642876
MA0024.10.779446
MA0025.11.05446
MA0027.12.46647
MA0028.11.28203
MA0029.10.757957
MA0030.10.764448
MA0031.10.729293
MA0038.11.32237
MA0040.10.835181
MA0041.10.323687
MA0042.10.311486
MA0043.10.918718
MA0046.10.858391
MA0048.12.03411
MA0050.10.431976
MA0051.10.542972
MA0052.10.84317
MA0055.12.847
MA0056.10
MA0057.10.934348
MA0058.10.305206
MA0059.10.316585
MA0060.12.21405
MA0061.10.56663
MA0063.10
MA0066.10.523573
MA0067.11.16502
MA0068.10.077274
MA0069.10.843506
MA0070.10.833895
MA0071.10.431174
MA0072.10.825495
MA0073.10.00359098
MA0074.10.488775
MA0076.11.40007
MA0077.10.804033
MA0078.10.575205
MA0081.10.338098
MA0083.10.917931
MA0084.11.49188
MA0087.10.87515
MA0088.10.413524
MA0089.10
MA0090.10.362551
MA0091.10.407455
MA0092.10.362847
MA0093.10.2553
MA0095.10
MA0098.10
MA0100.10.477594
MA0101.10.324888
MA0103.10.748482
MA0105.10.720048
MA0106.11.42499
MA0107.10.266586
MA0108.20.665343
MA0109.10
MA0111.10.375908
MA0113.10.555251
MA0114.10.19245
MA0115.10.921497
MA0116.10.238371
MA0117.10.88947
MA0119.10.325434
MA0122.10.909168
MA0124.11.11203
MA0125.11.03833
MA0130.10
MA0131.11.54167
MA0132.10
MA0133.10
MA0135.10.954884
MA0136.10.508047
MA0139.10.867077
MA0140.10.477483
MA0141.12.20026
MA0142.10.714976
MA0143.10.571221
MA0144.10.195095
MA0145.10.442138
MA0146.12.82741
MA0147.10.205697
MA0148.10.410398
MA0149.10.330018
MA0062.20.365726
MA0035.20.482026
MA0039.20.618828
MA0138.21.52535
MA0002.20.145685
MA0137.20.287486
MA0104.20.157347
MA0047.20.533516
MA0112.20.771888
MA0065.20.200864
MA0150.10.380623
MA0151.10
MA0152.10.53362
MA0153.10.971406
MA0154.12.62783
MA0155.10.490492
MA0156.10.278949
MA0157.10.683365
MA0158.10
MA0159.10.214506
MA0160.11.06259
MA0161.10
MA0162.10.176565
MA0163.10.820439
MA0164.10.508398
MA0080.20.267388
MA0018.20.51781
MA0099.20.624421
MA0079.20.13055
MA0102.21.5442
MA0258.10.180934
MA0259.10.571417
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:824&oldid=2574219"