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NonredundantMotifs:155: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.267857142857143;0.267857142857143;3.125;1.339285714285715!2;1.07142857142857;1.07142857142857;0.0;2.857142857142855!3;0.0;1.07142857142857;0.0;3.92857142857143!4;0.0;0.0;0.0;5.0!5;1.07142857142857;0.0;3.92857142857143;0.0!6;0.0;0.0;0.0;5.0!7;0.0;0.0;0.0;5.0!8;1.07142857142857;0.0;1.07142857142857;2.857142857142855!9;1.785714285714285;0.0;0.0;3.2142857142857153!10;0.0;1.785714285714285;3.2142857142857153;0.0!11;1.07142857142857;2.142857142857145;0.0;1.785714285714285!12;0.0;3.2142857142857153;0.0;1.785714285714285!13;5.0;0.0;0.0;0.0!14;0.0;0.714285714285715;4.285714285714285;0.0!15;2.4107142857142847;0.267857142857143;1.339285714285715;0.982142857142855
|entrez_gene_id=2303
|entrez_gene_id=2303
|motif_cluster_2013_march_motif_members= /HOCOMOCO:FOXC2_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:FOXC2_f1

Revision as of 10:48, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known155
  • db :HOCOMOCO
  • Id :FOXC2_f1
  • name  :
  • score :0.1470267923943343
  • External refs:
EntrezGene:2303
UniProt:2303

  • Internal refs:
EntrezGene:2303


Motif matrix
P0ACGT
10.2678571428571430.2678571428571433.1251.339285714285715
21.071428571428571.071428571428570.02.857142857142855
30.01.071428571428570.03.92857142857143
40.00.00.05.0
51.071428571428570.03.928571428571430.0
60.00.00.05.0
70.00.00.05.0
81.071428571428570.01.071428571428572.857142857142855
91.7857142857142850.00.03.2142857142857153
100.01.7857142857142853.21428571428571530.0
111.071428571428572.1428571428571450.01.785714285714285
120.03.21428571428571530.01.785714285714285
135.00.00.00.0
140.00.7142857142857154.2857142857142850.0
152.41071428571428470.2678571428571431.3392857142857150.982142857142855

Sub Motif Members