NonredundantMotifs:111: Difference between revisions
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|PWM=PO;A;C;G;T!1;163;29;603;84!2;7;470;376;26!3;1;868;9;1!4;19;1;1;858!5;1;1;876;1!6;3;65;1;810!7;1;875;2;1!8;862;2;1;14!9;250;435;190;4!10;1;14;12;852!11;2;873;3;1!12;860;2;1;16 | |PWM=PO;A;C;G;T!1;163;29;603;84!2;7;470;376;26!3;1;868;9;1!4;19;1;1;858!5;1;1;876;1!6;3;65;1;810!7;1;875;2;1!8;862;2;1;14!9;250;435;190;4!10;1;14;12;852!11;2;873;3;1!12;860;2;1;16 | ||
|entrez_gene_id=5087 | |entrez_gene_id=5087 | ||
|motif_cluster_2013_march_motif_members= /HOMER: | |motif_cluster_2013_march_motif_members= /HOMER:PBX3_GM12878-PBX3-ChIP-Seq~PBX1_MCF7-PBX1-ChIP-Seq(GSE28007) | ||
|name= | |name=non-redundant111 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=PBX1_MCF7-PBX1-ChIP-Seq(GSE28007) | |representative_motif_id=PBX1_MCF7-PBX1-ChIP-Seq(GSE28007) | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Revision as of 16:47, 29 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant111
- db :HOMER
- Id :PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)
- name :
- score :0.0635317205896486
- External refs:
- Internal refs:
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Sub Motif Members
