FFCP PHASE1:Hg19::chr13:39611956..39611976,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80209|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20291|TSSclassifier=S|UniProt=Q5JS36|association_with_transcript=0bp_to_ENST00000418503_5end|description=CAGE_peak_6_at_PROSER1_5end|id=chr13:39611956..39611976,-|ontology_enrichment_celltype=CL:0002076!2.48e-09!43;CL:0000066!4.83e-08!254|ontology_enrichment_celltype_v019=CL:0000039;5.33e-13;7!CL:0000586;5.33e-13;7!CL:0002251;9.78e-08;20!CL:0002076;2.96e-07;42|ontology_enrichment_celltype_v019_2=CL:0000039,6.32e-13,7;CL:0000586,6.32e-13,7;CL:0002076,1.20e-09,42;CL:0000066,7.06e-09,253;CL:0002251,7.01e-08,20;CL:0000223,2.06e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!2.35e-17!235;DOID:14566!4.18e-16!239;DOID:0050687!2.34e-12!143;DOID:3095!1.59e-10!22;DOID:2994!1.59e-10!22;DOID:0050686!1.11e-08!137;DOID:305!1.94e-08!106;DOID:1749!7.70e-07!14|ontology_enrichment_disease_v019=DOID:3095;4.91e-17;22!DOID:2994;4.91e-17;22!DOID:4362;2.24e-08;5!DOID:1749;3.30e-08;14!DOID:169;1.02e-07;6|ontology_enrichment_disease_v019_2=DOID:3095,2.79e-17,22;DOID:2994,2.79e-17,22;DOID:162,3.55e-17,235;DOID:14566,2.04e-16,239;DOID:0050687,4.57e-14,143;DOID:305,2.11e-10,106;DOID:4362,2.98e-08,5;DOID:1749,5.06e-08,14;DOID:169,8.24e-08,6;DOID:0050686,5.61e-07,137|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000002;6.85e-07;6!UBERON:0001560;6.85e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0000002,8.63e-07,6;UBERON:0001560,8.63e-07,6|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,0,0,0,0.491467873003018,1.39560233594486,0.218441372130172,0.263766978228454,0,0.331397375727916,0.672325146451775,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,0.410623275218653,0.627713197974014,0.61130724598361,0.410502947249729,0.629686250509434,0,0.767658796194425,0,0,0.90361775633475,2.21852406100073,1.16200800870452,1.9903692548239,0.587200878669695,0,0.601633342410425,0.434021741431704,0,0,0.515151135268373,0,0,0.242584061187816,0,0,0,0.28769239232215,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0.659702600373432,0,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0,0,0,0,0,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,2.64342657158052,2.24203425192614,0.526768169550154,0.196709770113833,0,0.616804496998528,0,0.32592226663359,0,0,0.445641827540694,0,0.221533894583621,0.541607727530031,0.128091319725675,0,0.164437904603676,0,0,0.14828656316206,0,0,0.226618685395132,0.383220493601921,0,0.253019692019503,0,0,0,0.301150238155546,0.383959833463255,0,0.236777252044017,0,1.61285394579786,0.802320587350522,0.434473211648397,0,0.670700859703636,0.511450247374121,0,0,0.144846518960824,0,0,0.567208902984407,0,0.614843499851882,0.196468613246569,2.18577172975525,1.11235332835329,0,0.174129737299267,0.132957960518865,0.476981248610684,0.571994910780128,1.85728750664782,0.993812036833525,0,0.347140501607594,0.56530794192401,0,0.550236083880135,0,0,0.35576626268671,0.33472061276467,0,0,0.488124115096339,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,0,0,0.183201743930407,0,0,1.3082821564276,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.49333509683432,0,0.808264032418128,0,0.151357427644931,0,1.40592859100278,0,0.570471821544449,0,0.352303495931295,0.323745888736263,0.140450806702248,0.204154171254893,0.122834317311768,0.206651562351531,0,0,0,0.718618141816238,0,0,0,0,0,0.150238058906597,0,0.179389635688862,0,0.423863802319124,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0.323292113637624,0.355009592516614,0.302256294682921,0.339121184620975,0.193260853163297,0.545492241181669,0.860413786167011,0.853815942907168,1.85541675650079,1.04574548582567,1.86589899027667,0.756962552626885,0.72995471815166,0,0,1.38134921352481,0.464367928031979,0,0.118306800039844,0.337169380156203,0,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0.441463099414651,1.72183813960359,0,0.768251997860379,1.1240175325762,0.603173834469785,0.925884451585296,1.62904152655162,0,0,0.231860809950154,0.352226082707465,0,0,0.761016608938393,0,0,0,0,0,0,0.503946384596579,0.283550194484773,1.70161193135412,0.581267877027924,0,2.95597942737566,1.05658120815871,0.207328115540772,0.288239906833923,0,0.507983154337352,0,0,0,0,0,0,0,0,0.36669142910475,0.258543431515556,0,0,0.531876233169741,0,0.514414748524284,0,0,0,1.08524321078289,0,0,0.355391948742546,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0.672510863961164,0.394061520403854,0,0.513372145118994,1.77866236955724,2.60279707715243,1.54657762555539,0.670065061337395,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,0,0,0.343143423810856,0.620304078368662,0.215714200818617,0.106727557803444,0,0,0.30239029332968,0,0,0,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,1.69203229428271,0.40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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80209 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20291 | |||
|TSSclassifier=S | |||
|UniProt=Q5JS36 | |||
|association_with_transcript=0bp_to_ENST00000418503_5end | |||
|description=CAGE_peak_6_at_PROSER1_5end | |||
|id=chr13:39611956..39611976,- | |||
|ontology_enrichment_celltype=CL:0002076!2.48e-09!43;CL:0000066!4.83e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;5.33e-13;7!CL:0000586;5.33e-13;7!CL:0002251;9.78e-08;20!CL:0002076;2.96e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.32e-13,7;CL:0000586,6.32e-13,7;CL:0002076,1.20e-09,42;CL:0000066,7.06e-09,253;CL:0002251,7.01e-08,20;CL:0000223,2.06e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.35e-17!235;DOID:14566!4.18e-16!239;DOID:0050687!2.34e-12!143;DOID:3095!1.59e-10!22;DOID:2994!1.59e-10!22;DOID:0050686!1.11e-08!137;DOID:305!1.94e-08!106;DOID:1749!7.70e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.91e-17;22!DOID:2994;4.91e-17;22!DOID:4362;2.24e-08;5!DOID:1749;3.30e-08;14!DOID:169;1.02e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.79e-17,22;DOID:2994,2.79e-17,22;DOID:162,3.55e-17,235;DOID:14566,2.04e-16,239;DOID:0050687,4.57e-14,143;DOID:305,2.11e-10,106;DOID:4362,2.98e-08,5;DOID:1749,5.06e-08,14;DOID:169,8.24e-08,6;DOID:0050686,5.61e-07,137 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000002;6.85e-07;6!UBERON:0001560;6.85e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,8.63e-07,6;UBERON:0001560,8.63e-07,6 | |||
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| |||
|short_description=p6@PROSER1 | |||
}} |
Revision as of 02:10, 11 September 2013
Short description: | p6@PROSER1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PROSER1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000418503_5end |
EntrezGene: | PROSER1 |
HGNC: | 20291 |
UniProt: | Q5JS36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.32e-13 | 7 |
germ cell | 6.32e-13 | 7 |
endo-epithelial cell | 1.20e-09 | 42 |
epithelial cell | 7.06e-09 | 253 |
epithelial cell of alimentary canal | 7.01e-08 | 20 |
endodermal cell | 2.06e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 8.63e-07 | 6 |
neck of organ | 8.63e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.79e-17 | 22 |
germ cell cancer | 2.79e-17 | 22 |
cancer | 3.55e-17 | 235 |
disease of cellular proliferation | 2.04e-16 | 239 |
cell type cancer | 4.57e-14 | 143 |
carcinoma | 2.11e-10 | 106 |
cervical cancer | 2.98e-08 | 5 |
squamous cell carcinoma | 5.06e-08 | 14 |
neuroendocrine tumor | 8.24e-08 | 6 |
organ system cancer | 5.61e-07 | 137 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.