FFCP PHASE1:Hg19::chr1:46649080..46649097,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10103|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20657|TSSclassifier=S|UniProt=|association_with_transcript=-7bp_to_ENST00000464786,ENST00000482143_5end|description=CAGE_peak_4_at_TSPAN1_5end|id=chr1:46649080..46649097,+|ontology_enrichment_celltype=CL:0000066!3.59e-09!254|ontology_enrichment_celltype_v019=CL:1000497;4.06e-07;17!CL:0002518;4.06e-07;17|ontology_enrichment_celltype_v019_2=CL:1000497,3.85e-07,17;CL:0002518,3.85e-07,17|ontology_enrichment_development_v019=UBERON:0008425;3.50e-14;1!UBERON:0006242;1.04e-13;1|ontology_enrichment_disease=DOID:305!2.43e-12!106;DOID:299!3.72e-09!25;DOID:0050687!1.07e-08!143;DOID:5093!6.17e-07!4;DOID:1612!6.17e-07!4|ontology_enrichment_disease_v019=DOID:4468;1.70e-07;2|ontology_enrichment_disease_v019_2=DOID:4468,1.20e-07,2|ontology_enrichment_uberon=UBERON:0005172!1.43e-09!55;UBERON:0005173!1.43e-09!55;UBERON:0005177!1.43e-09!107;UBERON:0009569!6.63e-09!113;UBERON:0001007!1.40e-08!155;UBERON:0001555!1.40e-08!155;UBERON:0007026!1.40e-08!155;UBERON:0000077!5.32e-08!130;UBERON:0002417!6.50e-08!61;UBERON:0000916!6.50e-08!61;UBERON:0001048!6.85e-08!168;UBERON:0001041!7.35e-08!98;UBERON:0004119!1.09e-07!169;UBERON:0000925!1.09e-07!169;UBERON:0006595!1.09e-07!169;UBERON:0003104!2.45e-07!238;UBERON:0009142!2.45e-07!238;UBERON:0000481!5.25e-07!347;UBERON:0009497!8.37e-07!25;UBERON:0000015!8.37e-07!25;UBERON:0002423!8.37e-07!25;UBERON:0006235!8.37e-07!25;UBERON:0004161!8.37e-07!25|ontology_enrichment_uberon_v019=UBERON:0005172;2.20e-10;52!UBERON:0005173;2.20e-10;52!UBERON:0002113;1.69e-08;24!UBERON:0011143;1.69e-08;24!UBERON:0002423;2.64e-08;25!UBERON:0000489;4.57e-07;29!UBERON:0002365;5.22e-07;31!UBERON:0002330;5.22e-07;31!UBERON:0002417;6.49e-07;58!UBERON:0000916;6.49e-07;58!UBERON:0006554;7.76e-07;30!UBERON:0001008;7.76e-07;30|ontology_enrichment_uberon_v019_2=UBERON:0005172,5.98e-14,54;UBERON:0005173,5.98e-14,54;UBERON:0002417,1.78e-12,60;UBERON:0000916,1.78e-12,60;UBERON:0005177,3.83e-11,101;UBERON:0009569,5.85e-10,112;UBERON:0009497,2.94e-08,25;UBERON:0000015,2.94e-08,25;UBERON:0002423,2.94e-08,25;UBERON:0006235,2.94e-08,25;UBERON:0004161,2.94e-08,25;UBERON:0002113,6.70e-08,26;UBERON:0003918,6.70e-08,26;UBERON:0011143,6.70e-08,26;UBERON:0005095,6.70e-08,26;UBERON:0007687,6.70e-08,26;UBERON:0000076,3.24e-07,8;UBERON:0002365,9.11e-07,31;UBERON:0002330,9.11e-07,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0.234321431833797,0,0.570471821544449,0.149448680551801,0,0,0.140450806702248,0.204154171254893,0.122834317311768,0,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0.113432183160021,0,0.213557388818567,0,0,0,0,0.37223371266318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0,0,0.330881918197182,0.217879444092406,0,0.539325232640658,0,0.38474715694639,0,0,0,0,5.07020139287323,0.982827216677626,1.18157981336281,0,0.122988438543114,0,0,0,0,0,0.325808305310325,0,1.44331342025273,0,0.117408694235822,0,0,0.190254152234598,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.904318131178758,0,0.099972991182057,0,0,0,0.479249710983165,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.315404830067869,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462092022626489,0,1.46139224653261,0,0,0,0,0,0,0.501689773854853,0.764628819135115,1.66215201785745,0,0,0,0,0.328014645699706,0,0.309123034943167,0.0915694648183434,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0.503865495708552,0,0,0,0.0898683511473268,0,0,0.197286811273867,0,0,0.969332746095218,0,0,0.520855522170466,3.32347999985544,0,0,0.762760950878299,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.230850775511391,0.113942055847001,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,1.95879369790977,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0.416024019039416,1.73559738335131,0,0,0.17472666824203,0,0.0967563312890851,0,0,0.0969890164884194,0,0,0.137041924646751,0,0,0.19555138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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10103 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20657 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-7bp_to_ENST00000464786,ENST00000482143_5end | |||
|description=CAGE_peak_4_at_TSPAN1_5end | |||
|id=chr1:46649080..46649097,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.59e-09!254 | |||
|ontology_enrichment_celltype_v019=CL:1000497;4.06e-07;17!CL:0002518;4.06e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,3.85e-07,17;CL:0002518,3.85e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0008425;3.50e-14;1!UBERON:0006242;1.04e-13;1 | |||
|ontology_enrichment_disease=DOID:305!2.43e-12!106;DOID:299!3.72e-09!25;DOID:0050687!1.07e-08!143;DOID:5093!6.17e-07!4;DOID:1612!6.17e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:4468;1.70e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.20e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005172!1.43e-09!55;UBERON:0005173!1.43e-09!55;UBERON:0005177!1.43e-09!107;UBERON:0009569!6.63e-09!113;UBERON:0001007!1.40e-08!155;UBERON:0001555!1.40e-08!155;UBERON:0007026!1.40e-08!155;UBERON:0000077!5.32e-08!130;UBERON:0002417!6.50e-08!61;UBERON:0000916!6.50e-08!61;UBERON:0001048!6.85e-08!168;UBERON:0001041!7.35e-08!98;UBERON:0004119!1.09e-07!169;UBERON:0000925!1.09e-07!169;UBERON:0006595!1.09e-07!169;UBERON:0003104!2.45e-07!238;UBERON:0009142!2.45e-07!238;UBERON:0000481!5.25e-07!347;UBERON:0009497!8.37e-07!25;UBERON:0000015!8.37e-07!25;UBERON:0002423!8.37e-07!25;UBERON:0006235!8.37e-07!25;UBERON:0004161!8.37e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0005172;2.20e-10;52!UBERON:0005173;2.20e-10;52!UBERON:0002113;1.69e-08;24!UBERON:0011143;1.69e-08;24!UBERON:0002423;2.64e-08;25!UBERON:0000489;4.57e-07;29!UBERON:0002365;5.22e-07;31!UBERON:0002330;5.22e-07;31!UBERON:0002417;6.49e-07;58!UBERON:0000916;6.49e-07;58!UBERON:0006554;7.76e-07;30!UBERON:0001008;7.76e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005172,5.98e-14,54;UBERON:0005173,5.98e-14,54;UBERON:0002417,1.78e-12,60;UBERON:0000916,1.78e-12,60;UBERON:0005177,3.83e-11,101;UBERON:0009569,5.85e-10,112;UBERON:0009497,2.94e-08,25;UBERON:0000015,2.94e-08,25;UBERON:0002423,2.94e-08,25;UBERON:0006235,2.94e-08,25;UBERON:0004161,2.94e-08,25;UBERON:0002113,6.70e-08,26;UBERON:0003918,6.70e-08,26;UBERON:0011143,6.70e-08,26;UBERON:0005095,6.70e-08,26;UBERON:0007687,6.70e-08,26;UBERON:0000076,3.24e-07,8;UBERON:0002365,9.11e-07,31;UBERON:0002330,9.11e-07,31 | |||
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|short_description=p4@TSPAN1 | |||
}} |
Revision as of 05:58, 12 September 2013
Short description: | p4@TSPAN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_TSPAN1_5end |
Coexpression cluster: | NA |
Association with transcript: | -7bp_to_ENST00000464786, ENST00000482143_5end |
EntrezGene: | TSPAN1 |
HGNC: | 20657 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 3.85e-07 | 17 |
kidney epithelial cell | 3.85e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
abdomen element | 5.98e-14 | 54 |
abdominal segment element | 5.98e-14 | 54 |
abdominal segment of trunk | 1.78e-12 | 60 |
abdomen | 1.78e-12 | 60 |
trunk region element | 3.83e-11 | 101 |
subdivision of trunk | 5.85e-10 | 112 |
epithelium of foregut-midgut junction | 2.94e-08 | 25 |
anatomical boundary | 2.94e-08 | 25 |
hepatobiliary system | 2.94e-08 | 25 |
foregut-midgut junction | 2.94e-08 | 25 |
septum transversum | 2.94e-08 | 25 |
kidney | 6.70e-08 | 26 |
kidney mesenchyme | 6.70e-08 | 26 |
upper urinary tract | 6.70e-08 | 26 |
kidney rudiment | 6.70e-08 | 26 |
kidney field | 6.70e-08 | 26 |
external ectoderm | 3.24e-07 | 8 |
exocrine gland | 9.11e-07 | 31 |
exocrine system | 9.11e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.20e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.