FFCP PHASE1:Hg19::chr20:44441242..44441255,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11065|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15937|TSSclassifier=S|UniProt=E1P5N7,O00762,Q5TZN3,G3XAB7,A6NP33|association_with_transcript=0bp_to_ENST00000405520,NM_007019,NM_181799,NM_181800,NM_181802,NM_181803,uc002xpl.2,uc002xpm.2,uc002xpn.2,uc002xpo.2,uc002xpp.2_5end|coexpression_cluster_id=C281|description=CAGE_peak_3_at_UBE2C_5end|id=chr20:44441242..44441255,+|ontology_enrichment_celltype=CL:0000066!1.66e-26!254;CL:0000548!7.38e-15!679;CL:0000004!7.38e-15!679;CL:0000255!7.38e-15!679;CL:0000012!1.35e-14!682;CL:0002321!2.63e-14!248;CL:0000220!1.53e-13!246;CL:0000221!4.01e-09!71;CL:0000133!6.08e-09!59;CL:0000333!1.76e-08!41;CL:0002319!2.78e-08!25;CL:0000076!5.36e-08!62;CL:0000003!1.26e-07!722|ontology_enrichment_celltype_v019=CL:0002319;1.44e-08;25!CL:0000095;6.59e-07;17|ontology_enrichment_celltype_v019_2=CL:0000066,5.13e-25,253;CL:0002321,1.62e-12,250;CL:0000133,6.59e-09,59;CL:0000333,1.18e-08,41;CL:0000221,1.45e-08,72;CL:0002319,1.47e-08,25;CL:0000076,2.00e-07,63;CL:0000095,7.46e-07,17;CL:0000123,7.46e-07,17|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!7.82e-46!235;DOID:14566!2.58e-45!239;DOID:0050687!7.04e-30!143;DOID:305!2.50e-22!106;DOID:0050686!5.29e-20!137;DOID:2531!6.02e-08!51;DOID:0060083!6.02e-08!51;DOID:299!3.61e-07!25|ontology_enrichment_disease_v019=DOID:0050687;5.58e-08;143!DOID:305;1.88e-07;106!DOID:299;3.73e-07;25!DOID:0060058;6.82e-07;10|ontology_enrichment_disease_v019_2=DOID:162,4.95e-46,235;DOID:14566,3.12e-45,239;DOID:0050687,3.54e-29,143;DOID:305,1.19e-21,106;DOID:0050686,5.87e-20,137;DOID:2531,9.51e-09,51;DOID:0060083,9.51e-09,51;DOID:299,3.59e-07,25;DOID:0060058,6.18e-07,10|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0.181678379270557,0.642301571672949,0.281908808191942,1.0007329835313,0,0,0,0,0,8.10921990454979,13.9560233594486,9.61142037372758,5.01157258634062,0.495065411840187,0.662794751455832,2.01697543935533,0.602694528023977,0.730310090387373,0.487932798790507,13.2970742722931,13.2600449308764,6.89600387251793,11.1632034981112,18.888670660058,18.5803106600308,19.2561782484837,24.0554727088341,20.3073815789292,0,0.383829398097213,0.309632246632152,10.1136334692682,6.32532429434325,3.69754010166788,19.7541361479769,17.9133232934151,9.68881449804996,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.426730222566507,0,1.14950487990897,0.661044872784862,0,0,0,0,0,0,12.9058201539788,0,0.393010762749165,0,1.00311897234407,0,0,0,3.45372416344038,0,0.221533894583621,0,4.22701355094728,4.29195846947598,6.41307827954337,6.63240042686036,6.0858648004361,0,0,0,5.21222976408804,0,0,0.253019692019503,0,0,0,0.150575119077773,0.255973222308837,0,0.473554504088034,0,0,0,0,0,2.68280343881454,5.88167784480239,7.22878304769133,0.50133791063589,2.02785126545153,3.1811437882044,0,10.5878995223756,5.5432349365641,6.32410456990508,3.53643503843824,13.1146303785315,17.4268688108682,0,0,0.132957960518865,0,0,0,5.56534740626774,4.30117297553062,3.47140501607594,4.52246353539208,4.61449379830897,9.62913146790236,6.26984899610432,0.516833518338658,1.42306505074684,1.00416183829401,3.22263453687318,1.52054421143703,5.6134273236079,2.57364156242108,2.43042584364528,7.67977663243086,8.53211615979445,11.7115939702655,7.66583187329416,7.59412527654503,5.67925406184263,0,0,8.28578699070815,0,3.41902381494365,0.264818361626438,1.43418310374407,8.51204117276057,4.48542080113846,4.2699598291882,3.45334567784024,4.04574346019696,3.90660949002095,7.68270944633256,1.21085942115945,0.576175924479999,13.5906430463602,0.936480230490962,5.70471821544449,1.94283284717341,12.3306223575953,9.55050371771976,9.5506548557529,0.61246251376468,12.160597413865,2.06651562351531,0,0.494533858557114,2.73048408581408,1.43723628363248,10.6051751791062,13.3876816263002,3.60183350129438,3.95079858792754,3.67785354958824,2.85452311922534,12.2506757812823,2.33206526395521,0.213557388818567,1.90738711043606,2.40072876867522,1.75189299705346,0.772921620136887,2.04728541964749,2.70042131586026,2.24105111870757,1.00973509697646,0.920498986422993,0.80823028409406,1.42003837006646,4.33234022378853,3.89989362314122,1.54608682530637,2.45471508531751,2.58124135850103,27.6880312914182,25.3131857494037,24.8655037740769,19.7992615079358,28.2599352980704,21.1686868263981,4.69348596989448,2.57296375277154,8.28809528114883,0.464367928031979,0,13.3686684045024,12.1380976856233,10.6044853148732,12.0220430278309,11.9833694250823,11.6262603364437,12.6741429670555,9.8110732562673,8.84918460976698,1.4763109092493,7.01208869017229,3.7041661019826,2.94017422771084,0,0,0.590789906681404,56.9487398244899,9.59309820636286,3.94605963686609,2.30475599358114,8.99214026060957,14.978816889333,6.29601427078001,8.47101593806844,3.11980435583874,4.3299402607582,4.521285794028,0.821860859650752,3.8978940895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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11065 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15937 | |||
|TSSclassifier=S | |||
|UniProt=E1P5N7,O00762,Q5TZN3,G3XAB7,A6NP33 | |||
|association_with_transcript=0bp_to_ENST00000405520,NM_007019,NM_181799,NM_181800,NM_181802,NM_181803,uc002xpl.2,uc002xpm.2,uc002xpn.2,uc002xpo.2,uc002xpp.2_5end | |||
|coexpression_cluster_id=C281 | |||
|description=CAGE_peak_3_at_UBE2C_5end | |||
|id=chr20:44441242..44441255,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.66e-26!254;CL:0000548!7.38e-15!679;CL:0000004!7.38e-15!679;CL:0000255!7.38e-15!679;CL:0000012!1.35e-14!682;CL:0002321!2.63e-14!248;CL:0000220!1.53e-13!246;CL:0000221!4.01e-09!71;CL:0000133!6.08e-09!59;CL:0000333!1.76e-08!41;CL:0002319!2.78e-08!25;CL:0000076!5.36e-08!62;CL:0000003!1.26e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.44e-08;25!CL:0000095;6.59e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.13e-25,253;CL:0002321,1.62e-12,250;CL:0000133,6.59e-09,59;CL:0000333,1.18e-08,41;CL:0000221,1.45e-08,72;CL:0002319,1.47e-08,25;CL:0000076,2.00e-07,63;CL:0000095,7.46e-07,17;CL:0000123,7.46e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!7.82e-46!235;DOID:14566!2.58e-45!239;DOID:0050687!7.04e-30!143;DOID:305!2.50e-22!106;DOID:0050686!5.29e-20!137;DOID:2531!6.02e-08!51;DOID:0060083!6.02e-08!51;DOID:299!3.61e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:0050687;5.58e-08;143!DOID:305;1.88e-07;106!DOID:299;3.73e-07;25!DOID:0060058;6.82e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.95e-46,235;DOID:14566,3.12e-45,239;DOID:0050687,3.54e-29,143;DOID:305,1.19e-21,106;DOID:0050686,5.87e-20,137;DOID:2531,9.51e-09,51;DOID:0060083,9.51e-09,51;DOID:299,3.59e-07,25;DOID:0060058,6.18e-07,10 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| |||
|short_description=p3@UBE2C | |||
}} |
Revision as of 08:44, 12 September 2013
Short description: | p3@UBE2C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_UBE2C_5end |
Coexpression cluster: | C281_Hodgkin_Reticulocytes_chronic_NK_acute_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000405520, NM_007019, NM_181799, NM_181800, NM_181802, NM_181803, uc002xpl.2, uc002xpm.2, uc002xpn.2, uc002xpo.2, uc002xpp.2_5end |
EntrezGene: | UBE2C |
HGNC: | 15937 |
UniProt: | E1P5N7O00762Q5TZN3G3XAB7A6NP33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.13e-25 | 253 |
embryonic cell | 1.62e-12 | 250 |
neurectodermal cell | 6.59e-09 | 59 |
migratory neural crest cell | 1.18e-08 | 41 |
ectodermal cell | 1.45e-08 | 72 |
neural cell | 1.47e-08 | 25 |
squamous epithelial cell | 2.00e-07 | 63 |
neuron associated cell | 7.46e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 7.46e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.95e-46 | 235 |
disease of cellular proliferation | 3.12e-45 | 239 |
cell type cancer | 3.54e-29 | 143 |
carcinoma | 1.19e-21 | 106 |
organ system cancer | 5.87e-20 | 137 |
hematologic cancer | 9.51e-09 | 51 |
immune system cancer | 9.51e-09 | 51 |
adenocarcinoma | 3.59e-07 | 25 |
lymphoma | 6.18e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.