FFCP PHASE1:Hg19::chr2:128396776..128396838,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=16084|TSSclassifier=N|UniProt=Q9H058|association_with_transcript=146bp_to_AL512716_5end|description=CAGE_peak_7_at_LIMS2_5end|id=chr2:128396776..128396838,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002615;3.46e-07;3!CL:0000136;3.51e-07;13!CL:0002334;4.15e-07;12|ontology_enrichment_celltype_v019_2=CL:0002615,4.01e-07,3;CL:0002334,5.20e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.72e-15!115;UBERON:0004457!2.61e-07!12;UBERON:0000042!2.61e-07!12|ontology_enrichment_uberon_v019=UBERON:0004457;1.69e-13;9!UBERON:0000042;1.69e-13;9!UBERON:0003688;4.22e-12;6!UBERON:0002358;4.22e-12;6!UBERON:0003684;4.22e-12;6!UBERON:0001178;4.22e-12;6|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.62e-12,6;UBERON:0002358,6.62e-12,6;UBERON:0003684,6.62e-12,6;UBERON:0001178,6.62e-12,6;UBERON:0004457,1.04e-11,12;UBERON:0000042,1.04e-11,12;UBERON:0007023,7.79e-11,114;UBERON:0004876,1.87e-07,11;UBERON:0003064,8.80e-07,28;UBERON:0002417,9.93e-07,60;UBERON:0000916,9.93e-07,60|phase1_expression=3.99692434395225,7.92171938396638,3.10099689011137,7.00513088471913,7.59833860526389,5.23403114460221,15.1979926900986,0,0,0.245733936501509,0.697801167972428,0,0.527533956456907,0.123766352960047,0,0.672325146451775,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0.755751887377619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0.764546456250458,0,0,0,0,0.786021525498329,0.205601498999509,1.67186495390678,0,0,0,0.334231370655521,0.294605907474837,0.221533894583621,0.270803863765016,0.128091319725675,0.130059347559878,0.986627427622057,0.552700035571697,0.289803085735052,0,0,0,0.793165398882963,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,3.2529523714611,0,0.724232594804119,0,0.486634870302636,0,0,0,1.11332214173056,0,0,0,0,0.26591592103773,0,0,0,0,0,0.347140501607594,0.56530794192401,3.35599548967925,0.550236083880135,0.417989933073621,0.258416759169329,0.71153252537342,0,1.20848795132744,0.760272105718513,0.732186172644509,0.367663080345869,0,0.446498641420399,0.673588117878509,0.225222960966644,0,0,0.183201743930407,0,0,0,8.94549513051573,0.633152558322899,0.132409180813219,0.286836620748814,0.354668382198357,2.80338800071154,3.20246987189115,1.2333377420858,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,1.48360157567134,0,0,0,0,0,0.877955241761676,1.5324389789951,0.600952235626387,0.113432183160021,0.717558542755448,0.640672166455702,0.635795703478686,0.300091096084402,0.103052529238439,0.772921620136887,0.744467425326359,0,1.75386609290158,0,0.644349290496095,0.80823028409406,0.710019185033229,1.0075209822764,0.339121184620975,0,0,0,0.121973706129595,0.132529768321485,0,0.310983165046111,0,0,0,2.57296375277154,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0.435758888184812,0,0,0.196221465125346,0.38474715694639,1.4763109092493,1.40241773803446,0,0,1.26755034821831,0,1.77236972004421,2.20731549707325,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.577465791044295,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253991577168676,0.763976851116555,1.17217447210047,0,0.719792448923265,0.300343057843917,0.857479297891735,0,0,0,0,0,0,2.6593811658487,6.24044621468197,0,0,0,0.428933980974443,0,0,0,0,0,0,0.871533458600294,0.299918973546171,0,0,0,0.958499421966331,2.29723871668228,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.23912584592421,5.53129865271201,5.20417969611984,1.7571212248907,0,0,0,0,0,0.260650843404249,0,1.02943027143257,0,0,0,0,3.32870879020994,0.604780586659361,3.47350930946288,1.38115775959256,5.3325417942284,3.07533958213682,2.04682899626681,3.53878626515936,4.45254199334973,0,0,0,0,0,0.241718899183244,0,0,0.114814448164607,0.182091168006717,1.18011973463482,0,0.0770153371044148,0,0,0,2.27466768141793,2.04112446331819,0.431831832204279,1.54227252690289,0,0.501689773854853,0,0,0,0,0,0,0,0,1.23649213977267,0.27470839445503,0,0,0,1.6068392984416,0.386682873168488,0,0,0,0,0.145016693914229,0,0.356128142586949,0,0,0,0,1.39453664789186,0.31481234683064,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0.823611089208164,0,0,0,0,0,0,0,0.545999645631943,0.424216295861138,0,0,0.66343897524122,0.438450885253763,0,0,0.202910376962704,0,0,0,0.0982490410131212,0.7133421029625,0.354761064070598,2.53329162357197,4.28083360847872,0,0,0,0,0,1.41215701165169,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0.782560276832555,0.797131363644112,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90460633053462,0.121360521749513,0,0,0.23874448473769,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16084 | |||
|TSSclassifier=N | |||
|UniProt=Q9H058 | |||
|association_with_transcript=146bp_to_AL512716_5end | |||
|description=CAGE_peak_7_at_LIMS2_5end | |||
|id=chr2:128396776..128396838,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002615;3.46e-07;3!CL:0000136;3.51e-07;13!CL:0002334;4.15e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002615,4.01e-07,3;CL:0002334,5.20e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.72e-15!115;UBERON:0004457!2.61e-07!12;UBERON:0000042!2.61e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.69e-13;9!UBERON:0000042;1.69e-13;9!UBERON:0003688;4.22e-12;6!UBERON:0002358;4.22e-12;6!UBERON:0003684;4.22e-12;6!UBERON:0001178;4.22e-12;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.62e-12,6;UBERON:0002358,6.62e-12,6;UBERON:0003684,6.62e-12,6;UBERON:0001178,6.62e-12,6;UBERON:0004457,1.04e-11,12;UBERON:0000042,1.04e-11,12;UBERON:0007023,7.79e-11,114;UBERON:0004876,1.87e-07,11;UBERON:0003064,8.80e-07,28;UBERON:0002417,9.93e-07,60;UBERON:0000916,9.93e-07,60 | |||
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| |||
|short_description=p7@LIMS2 | |||
}} |
Revision as of 13:24, 12 September 2013
Short description: | p7@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_LIMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 146bp_to_AL512716_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | Q9H058 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adipocyte of omentum tissue | 4.01e-07 | 3 |
preadipocyte | 5.20e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
omentum | 6.62e-12 | 6 |
peritoneum | 6.62e-12 | 6 |
abdominal cavity | 6.62e-12 | 6 |
visceral peritoneum | 6.62e-12 | 6 |
cavity lining | 1.04e-11 | 12 |
serous membrane | 1.04e-11 | 12 |
adult organism | 7.79e-11 | 114 |
urogenital ridge | 1.87e-07 | 11 |
intermediate mesoderm | 8.80e-07 | 28 |
abdominal segment of trunk | 9.93e-07 | 60 |
abdomen | 9.93e-07 | 60 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.