FFCP PHASE1:Hg19::chr2:189869053..189869071,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1281|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=2201|TSSclassifier=W|UniProt=P02461|association_with_transcript=46bp_to_X06700_5end|coexpression_cluster_id=C292|description=CAGE_peak_19_at_COL3A1_5end|id=chr2:189869053..189869071,+|ontology_enrichment_celltype=CL:0000055!1.05e-19!180;CL:0000057!5.60e-17!75;CL:0002334!4.02e-11!12;CL:0000048!1.50e-09!430;CL:0000183!2.21e-09!59;CL:0000187!2.81e-09!54;CL:0000723!5.59e-09!436;CL:0000680!2.37e-08!57;CL:0000056!2.37e-08!57;CL:0000355!2.37e-08!57;CL:0000034!2.97e-08!444;CL:0000499!8.96e-08!27;CL:0000393!1.57e-07!60;CL:0000211!1.57e-07!60;CL:0002569!8.27e-07!6|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000136,6.29e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001134!4.47e-09!61;UBERON:0002036!4.47e-09!61;UBERON:0003082!4.47e-09!61;UBERON:0002385!1.66e-08!63;UBERON:0001015!1.66e-08!63;UBERON:0000383!1.66e-08!63;UBERON:0004290!2.53e-08!70;UBERON:0000914!7.49e-08!83;UBERON:0002329!7.49e-08!83;UBERON:0003077!7.49e-08!83;UBERON:0003059!7.49e-08!83;UBERON:0007282!7.49e-08!83;UBERON:0009618!7.49e-08!83;UBERON:0007285!7.49e-08!83;UBERON:0003688!1.77e-07!6;UBERON:0002358!1.77e-07!6;UBERON:0003684!1.77e-07!6;UBERON:0001178!1.77e-07!6;UBERON:0002384!5.80e-07!375;UBERON:0000486!6.10e-07!82;UBERON:0003422!8.27e-07!6|ontology_enrichment_uberon_v019=UBERON:0003688;1.87e-08;6!UBERON:0002358;1.87e-08;6!UBERON:0003684;1.87e-08;6!UBERON:0001178;1.87e-08;6!UBERON:0004457;2.99e-08;9!UBERON:0000042;2.99e-08;9!UBERON:0005406;3.17e-07;2!UBERON:0001013;6.19e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.97e-08,6;UBERON:0002358,1.97e-08,6;UBERON:0003684,1.97e-08,6;UBERON:0001178,1.97e-08,6;UBERON:0005406,2.53e-07,2;UBERON:0001013,5.78e-07,14|phase1_expression=0.726713517082227,4.06790995392868,0.986680828671798,4.00293193412522,5.81049422755474,6.10636966870258,0,0,0.522371256399677,0,0,0.218441372130172,0,0.37129905888014,0.331397375727916,0,0.602694528023977,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0.361439152384566,0.50133791063589,1.59331170856906,3.1811437882044,3.40644409211845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.25326102332916,0.529636723252875,4.30254931123221,1.77334191099179,0,0,0.74000264525148,0,1.75123873690594,0.653847612453835,0.756787138224657,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0.989067717114227,0.910161361938026,1.43723628363248,0,0,0,0,0,0.300476117813194,0,0.538168907066586,0.427114777637135,0.847727604638247,0.900273288253207,0.515262646192195,1.03056216018252,1.30281799432113,0.506328996723799,0.292311015483596,0.757301322732344,0.368199594569197,0.969876340912871,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,4.41026134156626,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0.646358578788889,0,0,0,0,0,0,0,0.142977993658148,4.34097284313154,0.823240336780769,0,2.13235169245527,0.791951872933429,0,0,1.09970290300263,0,0,0,0.718874566474748,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0.271265023699736,1.66376689224646,1.07057393278297,0.157702415033935,0.117141414992713,0.300946099727719,0,0,0,0.368738337083406,0.173767228936166,0.391602314925481,1.37257369524342,0,0,0,0,0,0.907170879989041,0.992431231275107,0.61384789315225,3.64858122762996,1.02511319404561,0.511707249066704,1.93024705372329,1.48418066444991,0.462629081407967,0.710246901252508,0.246381468041427,0.519254429183621,0.697262270759755,0,0,0,0.918515585316854,0.910455840033585,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,4.82051789532479,0,0.462145851343933,0.460511024178389,0.827019434907183,0.644521469209642,0.580066775656914,0.255679882248303,1.06838442776085,0,0,0.127612712494584,0,0,2.83331112147576,1.3940745403212,0,0,0,0,0.143124886741991,0,0,0.953150969619124,0,0,0,0.78494864019923,0.719489830333259,3.29444435683266,0.824686816419805,0.202182481573316,0,1.26377536871694,0.48763373908959,0.487426979262569,2.11300293513511,0.545999645631943,3.25232493493539,1.13008116620243,0,0.66343897524122,0,0,0,0,0.30982349809975,0.563391205064483,0.430234056612155,1.17898849215745,0,0,0.211107635297664,1.31717957183961,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0.593929361665277,0.921482106297696,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1281 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2201 | |||
|TSSclassifier=W | |||
|UniProt=P02461 | |||
|association_with_transcript=46bp_to_X06700_5end | |||
|coexpression_cluster_id=C292 | |||
|description=CAGE_peak_19_at_COL3A1_5end | |||
|id=chr2:189869053..189869071,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.05e-19!180;CL:0000057!5.60e-17!75;CL:0002334!4.02e-11!12;CL:0000048!1.50e-09!430;CL:0000183!2.21e-09!59;CL:0000187!2.81e-09!54;CL:0000723!5.59e-09!436;CL:0000680!2.37e-08!57;CL:0000056!2.37e-08!57;CL:0000355!2.37e-08!57;CL:0000034!2.97e-08!444;CL:0000499!8.96e-08!27;CL:0000393!1.57e-07!60;CL:0000211!1.57e-07!60;CL:0002569!8.27e-07!6 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,6.29e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!4.47e-09!61;UBERON:0002036!4.47e-09!61;UBERON:0003082!4.47e-09!61;UBERON:0002385!1.66e-08!63;UBERON:0001015!1.66e-08!63;UBERON:0000383!1.66e-08!63;UBERON:0004290!2.53e-08!70;UBERON:0000914!7.49e-08!83;UBERON:0002329!7.49e-08!83;UBERON:0003077!7.49e-08!83;UBERON:0003059!7.49e-08!83;UBERON:0007282!7.49e-08!83;UBERON:0009618!7.49e-08!83;UBERON:0007285!7.49e-08!83;UBERON:0003688!1.77e-07!6;UBERON:0002358!1.77e-07!6;UBERON:0003684!1.77e-07!6;UBERON:0001178!1.77e-07!6;UBERON:0002384!5.80e-07!375;UBERON:0000486!6.10e-07!82;UBERON:0003422!8.27e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.87e-08;6!UBERON:0002358;1.87e-08;6!UBERON:0003684;1.87e-08;6!UBERON:0001178;1.87e-08;6!UBERON:0004457;2.99e-08;9!UBERON:0000042;2.99e-08;9!UBERON:0005406;3.17e-07;2!UBERON:0001013;6.19e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.97e-08,6;UBERON:0002358,1.97e-08,6;UBERON:0003684,1.97e-08,6;UBERON:0001178,1.97e-08,6;UBERON:0005406,2.53e-07,2;UBERON:0001013,5.78e-07,14 | |||
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|short_description=p19@COL3A1 | |||
}} |
Revision as of 15:38, 12 September 2013
Short description: | p19@COL3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_19_at_COL3A1_5end |
Coexpression cluster: | C292_Mesenchymal_skin_umbilical_Adipocyte_mesenchymal_Chondrocyte_skeletal |
Association with transcript: | 46bp_to_X06700_5end |
EntrezGene: | COL3A1 |
HGNC: | 2201 |
UniProt: | P02461 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 6.29e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.97e-08 | 6 |
peritoneum | 1.97e-08 | 6 |
abdominal cavity | 1.97e-08 | 6 |
visceral peritoneum | 1.97e-08 | 6 |
perirenal fat | 2.53e-07 | 2 |
adipose tissue | 5.78e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.