FFCP PHASE1:Mm9::chr10:60159219..60159254,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=22295|HGNC=|MCL_coexpression_id=0|UniProt=E9Q7M7,E9QP64,Q99PF4,Q5QGS4|association_with_transcript=0bp_to_ENSMUST00000105461,ENSMUST00000105463,ENSMUST00000105464,ENSMUST00000153149,NM_001252635,NM_023370,NR_045556,uc007fev.1,uc007fez.1_5end|description=CAGE_peak_5_at_Cdh23_5end|id=chr10:60159219..60159254,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.16e-09,14;UBERON:0003135,7.70e-09,15;UBERON:0003101,2.35e-08,16;UBERON:0000079,2.35e-08,16;UBERON:0004176,6.30e-08,17;UBERON:0009196,6.30e-08,17;UBERON:0009117,6.30e-08,17;UBERON:0000991,1.52e-07,18;UBERON:0005564,1.52e-07,18|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,5.44277056966847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.4203316699992,0,0,0,0,0,0,0,0,0,4.32045009386798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@Cdh23}} | ||
|EntrezGene=22295 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=E9Q7M7,E9QP64,Q99PF4,Q5QGS4 | |||
|association_with_transcript=0bp_to_ENSMUST00000105461,ENSMUST00000105463,ENSMUST00000105464,ENSMUST00000153149,NM_001252635,NM_023370,NR_045556,uc007fev.1,uc007fez.1_5end | |||
|description=CAGE_peak_5_at_Cdh23_5end | |||
|id=chr10:60159219..60159254,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.16e-09,14;UBERON:0003135,7.70e-09,15;UBERON:0003101,2.35e-08,16;UBERON:0000079,2.35e-08,16;UBERON:0004176,6.30e-08,17;UBERON:0009196,6.30e-08,17;UBERON:0009117,6.30e-08,17;UBERON:0000991,1.52e-07,18;UBERON:0005564,1.52e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42438965179803,5.44277056966847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.4203316699992,0,0,0,0,0,0,0,0,0,4.32045009386798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@Cdh23 | |||
}} | |||
Revision as of 17:02, 12 September 2013
| Short description: | p5@Cdh23 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_Cdh23_5end |
| Coexpression cluster: | MCL_coexpression_mm9:0 |
| Association with transcript: | 0bp_to_ENSMUST00000105461, ENSMUST00000105463, ENSMUST00000105464, ENSMUST00000153149, NM_001252635, NM_023370, NR_045556, uc007fev.1, uc007fez.1_5end |
| EntrezGene: | Cdh23 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| testis | 2.16e-09 | 14 |
| male reproductive organ | 7.70e-09 | 15 |
| male organism | 2.35e-08 | 16 |
| male reproductive system | 2.35e-08 | 16 |
| external genitalia | 6.30e-08 | 17 |
| indifferent external genitalia | 6.30e-08 | 17 |
| indifferent gonad | 6.30e-08 | 17 |
| gonad | 1.52e-07 | 18 |
| gonad primordium | 1.52e-07 | 18 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
