FFCP PHASE1:Mm9::chr11:3309165..3309198,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=16886|HGNC=|UniProt=O54785|association_with_transcript=0bp_to_ENSMUST00000101638,ENSMUST00000125832,ENSMUST00000145223_5end|description=CAGE_peak_3_at_Limk2_5end|id=chr11:3309165..3309198,-|ontology_enrichment_celltype=CL:0002076!3.22e-08!15;CL:0000066!3.49e-07!25;CL:0002563!6.60e-07!9;CL:0002251!6.60e-07!9|ontology_enrichment_celltype_v019_2=CL:0002076,3.22e-08,15;CL:0000066,3.49e-07,25;CL:0002563,6.60e-07,9;CL:0002251,6.60e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!4.08e-20!59;UBERON:0004119!2.22e-19!130;UBERON:0000925!2.22e-19!130;UBERON:0006595!2.22e-19!130;UBERON:0000160!1.34e-18!43;UBERON:0001007!2.03e-18!128;UBERON:0001555!2.03e-18!128;UBERON:0007026!2.03e-18!128;UBERON:0004921!2.25e-17!126;UBERON:0004185!2.25e-17!126;UBERON:0000344!4.46e-10!15;UBERON:0001242!4.48e-09!13;UBERON:0000060!4.48e-09!13;UBERON:0001262!4.48e-09!13;UBERON:0004786!4.48e-09!13;UBERON:0004923!1.25e-08!24;UBERON:0000485!3.82e-07!11;UBERON:0002108!3.87e-07!16;UBERON:0003350!6.60e-07!9;UBERON:0004808!6.60e-07!9;UBERON:0001277!6.60e-07!9;UBERON:0000464!9.89e-07!57|ontology_enrichment_uberon_v019_2=UBERON:0005409,8.87e-16,47;UBERON:0004119,7.36e-15,118;UBERON:0000925,7.36e-15,118;UBERON:0006595,7.36e-15,118;UBERON:0000160,1.39e-14,31;UBERON:0001007,5.16e-14,116;UBERON:0001555,5.16e-14,116;UBERON:0007026,5.16e-14,116;UBERON:0004921,4.27e-13,114;UBERON:0000344,4.46e-10,15;UBERON:0001242,4.48e-09,13;UBERON:0001262,4.48e-09,13;UBERON:0004786,4.48e-09,13;UBERON:0004923,1.25e-08,24;UBERON:0000485,3.82e-07,11;UBERON:0003350,6.60e-07,9;UBERON:0004808,6.60e-07,9;UBERON:0001277,6.60e-07,9|phase1_expression=5.92550734287738,13.2610654902957,15.0149748998547,14.8207463540347,10.5188103288733,31.8970616632591,34.8082834487333,7.48915275961142,2.111830832275,1.87251621057595,1.88339765048055,2.39316476986009,8.38883576662908,7.43073420561478,3.99731714178795,5.26435695213547,3.49780939064073,5.99378114180652,3.83920414096069,2.97072756258621,6.37824676133023,2.18440092641948,1.56719873483361,13.759348360233,13.0763290208287,10.3361753540704,15.5074318617267,19.1769397090441,19.0023419456374,14.1136872665561,15.9645967671819,6.35030673459631,5.53558308826113,15.8481681015439,52.570994794732,35.4079794613589,53.9007100532654,16.3227335987394,10.1573594788094,6.28228492768558,15.8822501768374,21.8574555186703,11.1667381197165,2.7697299954627,1.4192770370732,1.65192076945513,3.12956537739216,4.14247797122848,4.17403747195497,4.6663175777828,3.91961980551015,2.87505128729943,4.02678254538567,7.25362142011344,5.37750078627942,3.34437266846731,3.15186783932632,2.06268836910977,3.23706337375356,4.7609188134483,1.26766280701236,3.38844532069132,0,5.39939830368839,0.988866362566974,3.5524005747305,2.39680088414724,8.06858441175265,3.7328260431052,3.91517221161903,2.94454945891935,3.42781181284564,4.8591079009355,3.79721477566358,3.54628242767475,1.83843757322004,1.10115880999389,5.61824287574826,3.37934373163736,2.90149833006426,3.11057988248193,2.6045668527838,5.30447698102624,4.50210088025344,5.65353516774197,3.53554302568401,4.41352210477219,4.47358669980721,1.36307147999731,0.831287161174641,14.4932244350839,3.44169550792555,2.719885334831,1.07940638327563,4.54843492213368,1.79210754838934,3.65155492342555,2.04516387093669,0.779358013808606,3.88673531961374,10.2815696436977,6.41632387071589,5.09610479413291,7.11066703153331,12.5564803786504,11.6545538118545,14.6602089054287,4.79572294820052,3.88406825470758,4.30482203287992,3.81667718885499,1.82679286987285,2.07553947530453,2.26083960828934,4.35078216402108,3.39299796590124,27.1914464507811,1.3013942122792,7.07688441559899,1.94120219936891,2.42925670306433,3.39412677194655,13.0474232852686,12.5895742714965,13.6140359428746,18.9038220854358,1.7972268675888,2.39961092397363,3.17675567682662,6.29120685500255,4.11750542536764,3.8952849154988,3.99795936442236,2.55715457330331,7.2725815595846,5.353961681236,3.25885964321012,5.349499736234,4.29628689337247,3.99839526184301,2.99277018814219,3.90833577536904,3.42118046630164,4.67184935290717,5.23881043465224,4.35586648968489,5.80950692270319,7.50239775143145,2.58681591519411,3.78212160335639,3.87092473160687,3.5071317188412,3.33656699070717,3.48252166522167,5.14455341019859,6.56813080501028,2.1066395619397,1.80143534980301,3.12579849335152,4.14251545071004,4.69052119962192,3.42117916775928,3.55117103377815,3.93528463494808,3.23960937063494,1.86027155800326,1.60964040839772,3.97002164048376,3.78487654801005,2.95501435342371,2.99954595319666,2.33919979880532,3.51280184465681,3.62357330653004,5.67782861123144,1.9551876352064,10.9038198384653,9.78467096655114,3.19932375802851,5.80591679651096,7.7320476793256,9.4791256572971,8.00560957841533,8.3699275489526,10.4396393539793,6.91735609840846,11.5614196048124,9.54991065797524,11.307917052909,13.4822911298133,17.5071820398502,21.706398784726,2.84501851429623,3.19895835307241,5.63538678365402,3.25842124552503,3.68509725618489,3.71719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| ||
|EntrezGene=16886 | |||
|HGNC= | |||
|UniProt=O54785 | |||
|association_with_transcript=0bp_to_ENSMUST00000101638,ENSMUST00000125832,ENSMUST00000145223_5end | |||
|description=CAGE_peak_3_at_Limk2_5end | |||
|id=chr11:3309165..3309198,- | |||
|ontology_enrichment_celltype=CL:0002076!3.22e-08!15;CL:0000066!3.49e-07!25;CL:0002563!6.60e-07!9;CL:0002251!6.60e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.22e-08,15;CL:0000066,3.49e-07,25;CL:0002563,6.60e-07,9;CL:0002251,6.60e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.08e-20!59;UBERON:0004119!2.22e-19!130;UBERON:0000925!2.22e-19!130;UBERON:0006595!2.22e-19!130;UBERON:0000160!1.34e-18!43;UBERON:0001007!2.03e-18!128;UBERON:0001555!2.03e-18!128;UBERON:0007026!2.03e-18!128;UBERON:0004921!2.25e-17!126;UBERON:0004185!2.25e-17!126;UBERON:0000344!4.46e-10!15;UBERON:0001242!4.48e-09!13;UBERON:0000060!4.48e-09!13;UBERON:0001262!4.48e-09!13;UBERON:0004786!4.48e-09!13;UBERON:0004923!1.25e-08!24;UBERON:0000485!3.82e-07!11;UBERON:0002108!3.87e-07!16;UBERON:0003350!6.60e-07!9;UBERON:0004808!6.60e-07!9;UBERON:0001277!6.60e-07!9;UBERON:0000464!9.89e-07!57 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,8.87e-16,47;UBERON:0004119,7.36e-15,118;UBERON:0000925,7.36e-15,118;UBERON:0006595,7.36e-15,118;UBERON:0000160,1.39e-14,31;UBERON:0001007,5.16e-14,116;UBERON:0001555,5.16e-14,116;UBERON:0007026,5.16e-14,116;UBERON:0004921,4.27e-13,114;UBERON:0000344,4.46e-10,15;UBERON:0001242,4.48e-09,13;UBERON:0001262,4.48e-09,13;UBERON:0004786,4.48e-09,13;UBERON:0004923,1.25e-08,24;UBERON:0000485,3.82e-07,11;UBERON:0003350,6.60e-07,9;UBERON:0004808,6.60e-07,9;UBERON:0001277,6.60e-07,9 | |||
|phase1_expression=5.92550734287738,13.2610654902957,15.0149748998547,14.8207463540347,10.5188103288733,31.8970616632591,34.8082834487333,7.48915275961142,2.111830832275,1.87251621057595,1.88339765048055,2.39316476986009,8.38883576662908,7.43073420561478,3.99731714178795,5.26435695213547,3.49780939064073,5.99378114180652,3.83920414096069,2.97072756258621,6.37824676133023,2.18440092641948,1.56719873483361,13.759348360233,13.0763290208287,10.3361753540704,15.5074318617267,19.1769397090441,19.0023419456374,14.1136872665561,15.9645967671819,6.35030673459631,5.53558308826113,15.8481681015439,52.570994794732,35.4079794613589,53.9007100532654,16.3227335987394,10.1573594788094,6.28228492768558,15.8822501768374,21.8574555186703,11.1667381197165,2.7697299954627,1.4192770370732,1.65192076945513,3.12956537739216,4.14247797122848,4.17403747195497,4.6663175777828,3.91961980551015,2.87505128729943,4.02678254538567,7.25362142011344,5.37750078627942,3.34437266846731,3.15186783932632,2.06268836910977,3.23706337375356,4.7609188134483,1.26766280701236,3.38844532069132,0,5.39939830368839,0.988866362566974,3.5524005747305,2.39680088414724,8.06858441175265,3.7328260431052,3.91517221161903,2.94454945891935,3.42781181284564,4.8591079009355,3.79721477566358,3.54628242767475,1.83843757322004,1.10115880999389,5.61824287574826,3.37934373163736,2.90149833006426,3.11057988248193,2.6045668527838,5.30447698102624,4.50210088025344,5.65353516774197,3.53554302568401,4.41352210477219,4.47358669980721,1.36307147999731,0.831287161174641,14.4932244350839,3.44169550792555,2.719885334831,1.07940638327563,4.54843492213368,1.79210754838934,3.65155492342555,2.04516387093669,0.779358013808606,3.88673531961374,10.2815696436977,6.41632387071589,5.09610479413291,7.11066703153331,12.5564803786504,11.6545538118545,14.6602089054287,4.79572294820052,3.88406825470758,4.30482203287992,3.81667718885499,1.82679286987285,2.07553947530453,2.26083960828934,4.35078216402108,3.39299796590124,27.1914464507811,1.3013942122792,7.07688441559899,1.94120219936891,2.42925670306433,3.39412677194655,13.0474232852686,12.5895742714965,13.6140359428746,18.9038220854358,1.7972268675888,2.39961092397363,3.17675567682662,6.29120685500255,4.11750542536764,3.8952849154988,3.99795936442236,2.55715457330331,7.2725815595846,5.353961681236,3.25885964321012,5.349499736234,4.29628689337247,3.99839526184301,2.99277018814219,3.90833577536904,3.42118046630164,4.67184935290717,5.23881043465224,4.35586648968489,5.80950692270319,7.50239775143145,2.58681591519411,3.78212160335639,3.87092473160687,3.5071317188412,3.33656699070717,3.48252166522167,5.14455341019859,6.56813080501028,2.1066395619397,1.80143534980301,3.12579849335152,4.14251545071004,4.69052119962192,3.42117916775928,3.55117103377815,3.93528463494808,3.23960937063494,1.86027155800326,1.60964040839772,3.97002164048376,3.78487654801005,2.95501435342371,2.99954595319666,2.33919979880532,3.51280184465681,3.62357330653004,5.67782861123144,1.9551876352064,10.9038198384653,9.78467096655114,3.19932375802851,5.80591679651096,7.7320476793256,9.4791256572971,8.00560957841533,8.3699275489526,10.4396393539793,6.91735609840846,11.5614196048124,9.54991065797524,11.307917052909,13.4822911298133,17.5071820398502,21.706398784726,2.84501851429623,3.19895835307241,5.63538678365402,3.25842124552503,3.68509725618489,3.71719845418688,5.43834219268613,2.95220295959204,4.86696056308262,5.42947521255922,1.48226313543574,2.66952169145751,1.37591296579242,2.69834534861824,2.63718157805054,2.41177159752417,3.8193877767213,2.87696137450811,3.56697498905078,2.47105271869273,4.31304619582064,5.20997326735905,4.99260276983297,4.2938409251009,3.22915344339442,6.27176577772377,13.3022296919955,4.9267767060326,3.7481944581666,5.60158783058121,6.33663670378956,7.37027532743989,8.80761471278251,7.41507861859636,9.77337893458384,9.30151696524855,7.97273843287435,11.3065687153859,9.15230403889247,13.4523624480806,3.01582567878545,1.08781136763742,2.95058563811422,2.20749397043786,8.66973185934077,6.32943107597897,0.819674726883377,5.30188947129183,3.78609863299508,2.73307121007647,3.01592756825919,4.30143836314594,3.11918143715352,3.11384183867716,4.85772842009873,4.38383786866968,2.76701444562566,6.42642632843614,8.23252494207958,4.98583690268315,3.09485222771795,10.8880281161873,9.2921596837974,7.52619972080442,8.16273603804828,9.43025398779491,6.79194353625777,6.7635732547664,6.71913562237375,8.36127577798263,11.4079161083111,9.16506598013866,12.6502330289999,15.470331487228,6.80879211507576,5.94201610303324,4.65691261617916,6.21577401591618,7.09360934569094,3.92411398724555,4.77192159746151,5.48036908406279,9.1521966144847,14.192748747876,8.15955072803359,3.79238381765404,5.16686165426898,3.43783672090488,4.65552141612232,3.77524069413641,11.0762717919343,8.15871328846243,4.61351378154202,3.714963623338,3.33350149265481,4.1441060541032,3.96413260390973,6.17701067657611,3.0596117398894,3.21888340344413,2.76399947608848,13.3653886522116,6.80122386199441,6.70954241518601,8.1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| |||
|short_description=p3@Limk2 | |||
}} |
Revision as of 19:30, 12 September 2013
Short description: | p3@Limk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Limk2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000101638, ENSMUST00000125832, ENSMUST00000145223_5end |
EntrezGene: | Limk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.22e-08 | 15 |
epithelial cell | 3.49e-07 | 25 |
intestinal epithelial cell | 6.60e-07 | 9 |
epithelial cell of alimentary canal | 6.60e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 8.87e-16 | 47 |
endoderm-derived structure | 7.36e-15 | 118 |
endoderm | 7.36e-15 | 118 |
presumptive endoderm | 7.36e-15 | 118 |
intestine | 1.39e-14 | 31 |
digestive system | 5.16e-14 | 116 |
digestive tract | 5.16e-14 | 116 |
primitive gut | 5.16e-14 | 116 |
subdivision of digestive tract | 4.27e-13 | 114 |
mucosa | 4.46e-10 | 15 |
intestinal mucosa | 4.48e-09 | 13 |
wall of intestine | 4.48e-09 | 13 |
gastrointestinal system mucosa | 4.48e-09 | 13 |
organ component layer | 1.25e-08 | 24 |
simple columnar epithelium | 3.82e-07 | 11 |
epithelium of mucosa | 6.60e-07 | 9 |
gastrointestinal system epithelium | 6.60e-07 | 9 |
intestinal epithelium | 6.60e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.