FFCP PHASE1:Mm9::chr15:50721560..50721572,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=83925|HGNC=|UniProt=G3UW90,Q8K1J0,Q5XK21|association_with_transcript=14bp_to_ENSMUST00000077935,ENSMUST00000079901,ENSMUST00000165201,NM_032000,uc011zss.1,uc011zst.1_5end|description=CAGE_peak_10_at_Trps1_5end|id=chr15:50721560..50721572,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!5.04e-07!23;UBERON:0002021!7.25e-07!10;UBERON:0000411!7.25e-07!10;UBERON:0001950!7.25e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.30e-09,10;UBERON:0000411,7.30e-09,10;UBERON:0001950,7.30e-09,10;UBERON:0003102,2.60e-07,22|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.645616617207881,3.37892933164,1.40438715793196,1.36974374580404,0.478632953972018,1.19840510951844,0.699363219351979,0.333109761815663,0.404950534779652,0,0.788655413395594,1.09691546884591,0.42438965179803,0.850432901510698,0.893618560807968,0.522399578277871,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0.7813353445238,0.523523743973798,0,0,0,0.251793635951155,0.912392380975631,0,0,0.436050312760893,0.219686182734472,0,0.139986421625363,0,2.68452169692378,0,1.00828139742739,0.514518872071894,0,1.03134418455488,0,1.05798195854407,0,0,0,0.899899717281399,2.96659908770092,0,1.49800055259202,0.768436610643109,0.622137673850866,0.270011876663381,0.210324961351382,0.571301968807607,0.883474163806454,0.244981598429908,0.287536413054709,0,1.10115880999389,2.93680877595932,3.22573719838111,0.527545150920775,0.457438218012048,0.52091337055676,0.279182999001381,1.68828783009504,1.83357897332172,1.76777151284201,0.854230084794618,0.745597783301202,0.227178579999552,0.151143120213571,0.289864488701678,0,0,0,0,0,0.702222100658759,0.852151612890289,0.779358013808606,1.06001872353102,0,1.28326477414318,0,0,0.649473123033642,0.760079596425296,1.01104889002957,1.02765491747154,3.6251303710604,0.742210695324124,0.520455980298408,0.304465478312141,0.691846491768175,0.301445281105245,0.705532242814229,0.628332956648377,0,1.01219549843938,0,0.808834249737046,1.54589062922275,0.969750506270444,0,3.51336956413857,1.67557365450764,0.255457055208591,1.43778149407104,0,1.14363204365758,2.39665023047716,2.74500361691176,0.879580464790051,4.86708096538374,1.79000820131231,3.32460871295296,2.75810147215188,0.712875546952214,1.36847667671102,1.26361379216837,0.841767423545896,0.780722657776222,0.229902104433473,0.180062129805349,0.452114453507145,0.816437989815934,0.640568601424249,1.12442069471675,0.258703370739016,0.646703978798527,1.70195472151037,2.28736461413134,0.219195732427575,1.94633074457919,4.52727816478817,2.05782136407943,0.59710280045548,0,0.51469581422943,0.284163499395593,0,0.703578179943289,0,0.23674473558521,0.393528463494808,0.771335564436891,0.465067889500816,0.268273401399619,0.350296027101508,0,0.820837320395476,0.810688095458557,0.292399974850665,0.439100230582101,0.671032093801859,3.78521907415429,0.823236899034275,0,0.264450566663544,0.639864751605702,0.232236671860439,0.644337306610467,1.21010114774006,0.444756087689741,0,0.474529061544512,0.329397909448022,1.00534083520108,0.397912944082302,0.58489226135736,0,0.216138049874694,0.995706366271836,0.189667900953082,1.14248512609729,1.1270773567308,1.83286195060783,0.775809948670503,0.701358198903186,0.569128834118316,1.47610147979602,1.41298855057237,0.493588655687202,0,0.166845105716094,0,0,0,0.241177159752417,0,0.575392274901621,0.324270453550071,0,0,0,0,0,0.179397413521912,0,2.58654466233247,0.37898282354097,1.62964976442026,1.69745085775188,0.234690248288502,0.670025029767263,0.952174563544055,1.56106918286239,1.57635144106191,2.21464689648775,1.91345722388985,1.96635977658886,1.89953480052485,1.15719246865209,9.04747703635634,3.80733978673097,1.47529281905711,3.58717770196152,1.12385412991454,1.64096361229084,0,1.76729649043061,1.26203287766503,0,0.215423397732799,0.716906393857656,0.891194696329576,2.83076530788832,0,1.16902343164525,0.790575555893047,3.21321316421807,0.851640511249612,0,0.651547837414304,2.63952196756057,0,0.728341908464944,0.302323556964751,0.377210159511796,0,0.307435147943927,0.258428293168221,0.363533729477506,0,0.316036757935816,1.05418608574999,1.03135543248187,2.38307724027652,0.18006109403131,0.776152102696527,0.857348140126369,1.06404140185364,0.713475270408282,0.822745103010605,0,0.469343416127421,0,1.32317038832977,2.63818004706368,2.09903754704677,1.68876189798836,1.90995750405018,1.14898629821543,0.291480836629851,1.29797711407357,1.70870880797853,0.206386867963223,0.185194527369712,0,1.0935538217682,0.457556346413045,1.01987057996313,0.559805809294632,1.10559979043539,0,0.632671987162271,1.01659733563424,1.18805874903981,0.836353184057875,1.52853794622324,0.674321731924103,0.743881101528023,0,0.777689839750757,4.34937519160848,0,0.448549638131936,0.330916980914195,0,0.129159823477731,0.675824501963113,0.58678619322877,0.13020438484395,0.209718688851422,0,0,0.316011120628178,0.202725215290164,0.410843828659309,0.77952493786677,0.537080087002444,0.596044064343795,0.721172697119813,0.443068581523732,0.605798699688886,0.762068066549998,0.504130925684203,1.26695244961678,0.288635524920988,1.5193997283604,3.17422537061296,0,0,0,1.35232715822533,1.50145980360946,2.56412273974171,3.00115730710692,0,2.25900737046827,3.68260189205742,3.43737308063638,6.01486138202907,2.05524755931193,4.5323633843382,1.35004500046361,2.2516060161211,2.71885445390523,3.62432218226274,1.03787347584177,0.798049746802062,0.682934423016537,1.21553358534147,0,1.10306105070008,1.77797382241292,0.618105171716683,1.28367683836726,1.26348605881899,2.02783439912192,0.754505365544305,1.591905626988,1.60062881012173,1.32101578597911,0.952587382566147,0.927074607558844,0.964546102318525,0.412085900803307,0.588795680537589,1.37147700954166,1.06485483695602,0.953744759789284,2.76158191601424,1.78807822789128,1.86152137361688,0.73171189149109,1.05227884575137,1.90125759384206,0,1.30498519936592,0.689531376628944,1.63692417267876,1.39443157067369,1.35034627686799,0.249810577937946,0.467863216890817,1.28922632428979,1.14772999241306,1.32354851471709,1.39120701372253|short_description=p10@Trps1}} | ||
|EntrezGene=83925 | |||
|HGNC= | |||
|UniProt=G3UW90,Q8K1J0,Q5XK21 | |||
|association_with_transcript=14bp_to_ENSMUST00000077935,ENSMUST00000079901,ENSMUST00000165201,NM_032000,uc011zss.1,uc011zst.1_5end | |||
|description=CAGE_peak_10_at_Trps1_5end | |||
|id=chr15:50721560..50721572,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!5.04e-07!23;UBERON:0002021!7.25e-07!10;UBERON:0000411!7.25e-07!10;UBERON:0001950!7.25e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,7.30e-09,10;UBERON:0000411,7.30e-09,10;UBERON:0001950,7.30e-09,10;UBERON:0003102,2.60e-07,22 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0.645616617207881,3.37892933164,1.40438715793196,1.36974374580404,0.478632953972018,1.19840510951844,0.699363219351979,0.333109761815663,0.404950534779652,0,0.788655413395594,1.09691546884591,0.42438965179803,0.850432901510698,0.893618560807968,0.522399578277871,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0.418531630736908,0.7813353445238,0.523523743973798,0,0,0,0.251793635951155,0.912392380975631,0,0,0.436050312760893,0.219686182734472,0,0.139986421625363,0,2.68452169692378,0,1.00828139742739,0.514518872071894,0,1.03134418455488,0,1.05798195854407,0,0,0,0.899899717281399,2.96659908770092,0,1.49800055259202,0.768436610643109,0.622137673850866,0.270011876663381,0.210324961351382,0.571301968807607,0.883474163806454,0.244981598429908,0.287536413054709,0,1.10115880999389,2.93680877595932,3.22573719838111,0.527545150920775,0.457438218012048,0.52091337055676,0.279182999001381,1.68828783009504,1.83357897332172,1.76777151284201,0.854230084794618,0.745597783301202,0.227178579999552,0.151143120213571,0.289864488701678,0,0,0,0,0,0.702222100658759,0.852151612890289,0.779358013808606,1.06001872353102,0,1.28326477414318,0,0,0.649473123033642,0.760079596425296,1.01104889002957,1.02765491747154,3.6251303710604,0.742210695324124,0.520455980298408,0.304465478312141,0.691846491768175,0.301445281105245,0.705532242814229,0.628332956648377,0,1.01219549843938,0,0.808834249737046,1.54589062922275,0.969750506270444,0,3.51336956413857,1.67557365450764,0.255457055208591,1.43778149407104,0,1.14363204365758,2.39665023047716,2.74500361691176,0.879580464790051,4.86708096538374,1.79000820131231,3.32460871295296,2.75810147215188,0.712875546952214,1.36847667671102,1.26361379216837,0.841767423545896,0.780722657776222,0.229902104433473,0.180062129805349,0.452114453507145,0.816437989815934,0.640568601424249,1.12442069471675,0.258703370739016,0.646703978798527,1.70195472151037,2.28736461413134,0.219195732427575,1.94633074457919,4.52727816478817,2.05782136407943,0.59710280045548,0,0.51469581422943,0.284163499395593,0,0.703578179943289,0,0.23674473558521,0.393528463494808,0.771335564436891,0.465067889500816,0.268273401399619,0.350296027101508,0,0.820837320395476,0.810688095458557,0.292399974850665,0.439100230582101,0.671032093801859,3.78521907415429,0.823236899034275,0,0.264450566663544,0.639864751605702,0.232236671860439,0.644337306610467,1.21010114774006,0.444756087689741,0,0.474529061544512,0.329397909448022,1.00534083520108,0.397912944082302,0.58489226135736,0,0.216138049874694,0.995706366271836,0.189667900953082,1.14248512609729,1.1270773567308,1.83286195060783,0.775809948670503,0.701358198903186,0.569128834118316,1.47610147979602,1.41298855057237,0.493588655687202,0,0.166845105716094,0,0,0,0.241177159752417,0,0.575392274901621,0.324270453550071,0,0,0,0,0,0.179397413521912,0,2.58654466233247,0.37898282354097,1.62964976442026,1.69745085775188,0.234690248288502,0.670025029767263,0.952174563544055,1.56106918286239,1.57635144106191,2.21464689648775,1.91345722388985,1.96635977658886,1.89953480052485,1.15719246865209,9.04747703635634,3.80733978673097,1.47529281905711,3.58717770196152,1.12385412991454,1.64096361229084,0,1.76729649043061,1.26203287766503,0,0.215423397732799,0.716906393857656,0.891194696329576,2.83076530788832,0,1.16902343164525,0.790575555893047,3.21321316421807,0.851640511249612,0,0.651547837414304,2.63952196756057,0,0.728341908464944,0.302323556964751,0.377210159511796,0,0.307435147943927,0.258428293168221,0.363533729477506,0,0.316036757935816,1.05418608574999,1.03135543248187,2.38307724027652,0.18006109403131,0.776152102696527,0.857348140126369,1.06404140185364,0.713475270408282,0.822745103010605,0,0.469343416127421,0,1.32317038832977,2.63818004706368,2.09903754704677,1.68876189798836,1.90995750405018,1.14898629821543,0.291480836629851,1.29797711407357,1.70870880797853,0.206386867963223,0.185194527369712,0,1.0935538217682,0.457556346413045,1.01987057996313,0.559805809294632,1.10559979043539,0,0.632671987162271,1.01659733563424,1.18805874903981,0.836353184057875,1.52853794622324,0.674321731924103,0.743881101528023,0,0.777689839750757,4.34937519160848,0,0.448549638131936,0.330916980914195,0,0.129159823477731,0.675824501963113,0.58678619322877,0.13020438484395,0.209718688851422,0,0,0.316011120628178,0.202725215290164,0.410843828659309,0.77952493786677,0.537080087002444,0.596044064343795,0.721172697119813,0.443068581523732,0.605798699688886,0.762068066549998,0.504130925684203,1.26695244961678,0.288635524920988,1.5193997283604,3.17422537061296,0,0,0,1.35232715822533,1.50145980360946,2.56412273974171,3.00115730710692,0,2.25900737046827,3.68260189205742,3.43737308063638,6.01486138202907,2.05524755931193,4.5323633843382,1.35004500046361,2.2516060161211,2.71885445390523,3.62432218226274,1.03787347584177,0.798049746802062,0.682934423016537,1.21553358534147,0,1.10306105070008,1.77797382241292,0.618105171716683,1.28367683836726,1.26348605881899,2.02783439912192,0.754505365544305,1.591905626988,1.60062881012173,1.32101578597911,0.952587382566147,0.927074607558844,0.964546102318525,0.412085900803307,0.588795680537589,1.37147700954166,1.06485483695602,0.953744759789284,2.76158191601424,1.78807822789128,1.86152137361688,0.73171189149109,1.05227884575137,1.90125759384206,0,1.30498519936592,0.689531376628944,1.63692417267876,1.39443157067369,1.35034627686799,0.249810577937946,0.467863216890817,1.28922632428979,1.14772999241306,1.32354851471709,1.39120701372253 | |||
|short_description=p10@Trps1 | |||
}} | |||
Revision as of 10:33, 13 September 2013
| Short description: | p10@Trps1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_10_at_Trps1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 14bp_to_ENSMUST00000077935, ENSMUST00000079901, ENSMUST00000165201, NM_032000, uc011zss.1, uc011zst.1_5end |
| EntrezGene: | Trps1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| occipital lobe | 7.30e-09 | 10 |
| visual cortex | 7.30e-09 | 10 |
| neocortex | 7.30e-09 | 10 |
| surface structure | 2.60e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
