FFCP PHASE1:Mm9::chr15:54109850..54109867,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=18383|HGNC=|MCL_coexpression_id=31|UniProt=O08712,Q3UK97|association_with_transcript=171bp_to_ENSMUST00000079772,NM_008764,uc007vrk.1_5end|description=CAGE_peak_1_at_Tnfrsf11b_5end|id=chr15:54109850..54109867,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!7.90e-13!130;UBERON:0000925!7.90e-13!130;UBERON:0006595!7.90e-13!130;UBERON:0001007!8.78e-12!128;UBERON:0001555!8.78e-12!128;UBERON:0007026!8.78e-12!128;UBERON:0004921!8.05e-11!126;UBERON:0004185!8.05e-11!126;UBERON:0000160!1.86e-07!43;UBERON:0005409!6.48e-07!59|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.76e-11,118;UBERON:0000925,1.76e-11,118;UBERON:0006595,1.76e-11,118;UBERON:0001007,1.79e-10,116;UBERON:0001555,1.79e-10,116;UBERON:0007026,1.79e-10,116;UBERON:0004921,1.51e-09,114|phase1_expression=1.12104192973356,130.167827049482,87.8148532021805,0,0.500895729946347,84.9469115874162,175.44309308724,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,0.850432901510698,2.48227378002213,0.261199789138935,104.635044506888,146.363121320854,123.459872284729,155.505080613426,254.902468267407,4.56056206695297,2.52030129759931,316.85289972643,0,0,0,0.577703239502549,0.332469290716985,0,0,0,0,0,0,0,2.64383317748712,3.24406179902447,4.03802854755699,1.56478268869608,0,0.659058548203415,1.1665793944457,0.979904951377538,0,0,0,0,5.14518872071894,2.57880095944881,4.64104883049698,0.809265843438391,0.528990979272033,0.633831403506179,0,2.66788438833342,1.3498495759221,0,1.4209602298922,1.49800055259202,0.384218305321555,0.829516898467821,0.675029691658453,0.630974884054146,0.856952953211411,2.65042249141936,0.61245399607477,0.383381884072945,0,1.10115880999389,0.383062014255563,0.614426133024974,0.527545150920775,0.731901148819277,0,0.279182999001381,1.68828783009504,1.22238598221448,1.47314292736834,1.70846016958924,0.372798891650601,0.832988126665025,0.302286240427142,5.79728977403356,67.1130624045481,0,1.61910957491345,1.29955283489534,3.58421509677868,4.91555470461132,26.9279909673331,12.2099422163348,12.0135455333516,0.985903938436763,26.9485602570067,15.2883143823987,14.2213340630666,54.3392512938147,65.8735650235256,54.5966400615966,2.39786147410026,2.07150306917737,25.0867215019554,5.55153045651635,9.43842982767638,5.30415643688935,6.0289056221049,11.6412820064348,9.29932775839599,57.8436224498435,7.66376591675532,12.3845477272982,10.5148452465816,6.8460870722722,13.5765070877862,11.1835056730873,2.63502717310392,1.67557365450764,7.15279754584056,0.599075622529601,0.599902730993408,0.254140454146129,1.3481157546434,0,1.63350657746724,2.9550134432687,2.81287003063364,1.45451631191692,0.811206315338788,23.6267324132734,7.46441823660558,1.51633655060205,1.68353484709179,1.04096354370163,0.459804208866946,0.720248519221397,1.65775299619287,0.612328492361951,1.0249097622788,1.49922759295566,1.55222022443409,0.862271971731369,0.567318240503458,1.75951124163949,1.97276159184817,1.39023624612799,2.089512999133,5.14455341019859,1.79130840136644,0,0,0,0.414251545071004,0.703578179943289,1.08037236876609,0.710234206755631,0.196764231747404,1.69693824176116,0,1.87791380979733,0.350296027101508,2.30383789878873,2.95501435342371,0.56748166682099,0.584799949701329,2.63460138349261,0.536825675041487,0.841159794256509,2.26390147234426,1.65209391491899,4.49565963328025,4.05247676016945,4.87697010906921,10.6959992897337,9.88249270654378,12.8979265430025,17.3105319762429,10.9141684155238,27.8341233483578,21.1121575392226,24.8695590051439,21.4460495831032,19.7740269903929,12.3198688428576,6.77080329064848,1.13800740571849,2.39921876480431,0,5.29493452397817,6.98228953803453,3.85747009396752,1.45444035385792,1.18088118383682,0.627994911365499,0.740382983530803,10.9687472022245,1.00107063429656,0.982794975566015,2.9232074610031,1.42002084971952,2.41177159752417,4.07401362850272,8.91858026097513,2.7562988551756,13.453509246216,14.3768206527355,16.7463426450827,14.3537329632698,23.7424145270285,11.8402292924462,6.75420929908714,2.58654466233247,1.32643988239339,1.46668478797823,1.69745085775188,4.69380496577004,11.7254380209271,15.2347930167049,4.29294025287157,6.46304090835383,5.75808193086815,3.6674596791222,5.07976275618788,5.69860440157455,4.33947175744535,0,0,1.47529281905711,1.65562047782839,5.13761887960934,2.57865710502847,7.86887737808042,5.30188947129183,0.631016438832513,0.390438744296638,0.646270193198397,0,0,0,0,1.16902343164525,1.97643888973262,1.92792789853084,5.39372323791421,10.6839362200353,14.6598263418218,15.6721616823909,3.98235415019888,1.45668381692989,0.604647113929502,1.69744571780308,5.31543407185391,8.60818414242997,15.247269296925,13.4507479906677,19.250858432775,12.3254335594968,7.37930260024991,11.3449097573006,0.340439605753788,1.26042765821917,1.94038025674132,2.35770738534752,3.72414490648775,4.63758925765383,3.9491764944509,1.522324745573,225.754183157289,414.343530609632,1.32317038832977,14.5099902588502,3.87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| ||
|EntrezGene=18383 | |||
|HGNC= | |||
|MCL_coexpression_id=31 | |||
|UniProt=O08712,Q3UK97 | |||
|association_with_transcript=171bp_to_ENSMUST00000079772,NM_008764,uc007vrk.1_5end | |||
|description=CAGE_peak_1_at_Tnfrsf11b_5end | |||
|id=chr15:54109850..54109867,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!7.90e-13!130;UBERON:0000925!7.90e-13!130;UBERON:0006595!7.90e-13!130;UBERON:0001007!8.78e-12!128;UBERON:0001555!8.78e-12!128;UBERON:0007026!8.78e-12!128;UBERON:0004921!8.05e-11!126;UBERON:0004185!8.05e-11!126;UBERON:0000160!1.86e-07!43;UBERON:0005409!6.48e-07!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.76e-11,118;UBERON:0000925,1.76e-11,118;UBERON:0006595,1.76e-11,118;UBERON:0001007,1.79e-10,116;UBERON:0001555,1.79e-10,116;UBERON:0007026,1.79e-10,116;UBERON:0004921,1.51e-09,114 | |||
|phase1_expression=1.12104192973356,130.167827049482,87.8148532021805,0,0.500895729946347,84.9469115874162,175.44309308724,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,0.850432901510698,2.48227378002213,0.261199789138935,104.635044506888,146.363121320854,123.459872284729,155.505080613426,254.902468267407,4.56056206695297,2.52030129759931,316.85289972643,0,0,0,0.577703239502549,0.332469290716985,0,0,0,0,0,0,0,2.64383317748712,3.24406179902447,4.03802854755699,1.56478268869608,0,0.659058548203415,1.1665793944457,0.979904951377538,0,0,0,0,5.14518872071894,2.57880095944881,4.64104883049698,0.809265843438391,0.528990979272033,0.633831403506179,0,2.66788438833342,1.3498495759221,0,1.4209602298922,1.49800055259202,0.384218305321555,0.829516898467821,0.675029691658453,0.630974884054146,0.856952953211411,2.65042249141936,0.61245399607477,0.383381884072945,0,1.10115880999389,0.383062014255563,0.614426133024974,0.527545150920775,0.731901148819277,0,0.279182999001381,1.68828783009504,1.22238598221448,1.47314292736834,1.70846016958924,0.372798891650601,0.832988126665025,0.302286240427142,5.79728977403356,67.1130624045481,0,1.61910957491345,1.29955283489534,3.58421509677868,4.91555470461132,26.9279909673331,12.2099422163348,12.0135455333516,0.985903938436763,26.9485602570067,15.2883143823987,14.2213340630666,54.3392512938147,65.8735650235256,54.5966400615966,2.39786147410026,2.07150306917737,25.0867215019554,5.55153045651635,9.43842982767638,5.30415643688935,6.0289056221049,11.6412820064348,9.29932775839599,57.8436224498435,7.66376591675532,12.3845477272982,10.5148452465816,6.8460870722722,13.5765070877862,11.1835056730873,2.63502717310392,1.67557365450764,7.15279754584056,0.599075622529601,0.599902730993408,0.254140454146129,1.3481157546434,0,1.63350657746724,2.9550134432687,2.81287003063364,1.45451631191692,0.811206315338788,23.6267324132734,7.46441823660558,1.51633655060205,1.68353484709179,1.04096354370163,0.459804208866946,0.720248519221397,1.65775299619287,0.612328492361951,1.0249097622788,1.49922759295566,1.55222022443409,0.862271971731369,0.567318240503458,1.75951124163949,1.97276159184817,1.39023624612799,2.089512999133,5.14455341019859,1.79130840136644,0,0,0,0.414251545071004,0.703578179943289,1.08037236876609,0.710234206755631,0.196764231747404,1.69693824176116,0,1.87791380979733,0.350296027101508,2.30383789878873,2.95501435342371,0.56748166682099,0.584799949701329,2.63460138349261,0.536825675041487,0.841159794256509,2.26390147234426,1.65209391491899,4.49565963328025,4.05247676016945,4.87697010906921,10.6959992897337,9.88249270654378,12.8979265430025,17.3105319762429,10.9141684155238,27.8341233483578,21.1121575392226,24.8695590051439,21.4460495831032,19.7740269903929,12.3198688428576,6.77080329064848,1.13800740571849,2.39921876480431,0,5.29493452397817,6.98228953803453,3.85747009396752,1.45444035385792,1.18088118383682,0.627994911365499,0.740382983530803,10.9687472022245,1.00107063429656,0.982794975566015,2.9232074610031,1.42002084971952,2.41177159752417,4.07401362850272,8.91858026097513,2.7562988551756,13.453509246216,14.3768206527355,16.7463426450827,14.3537329632698,23.7424145270285,11.8402292924462,6.75420929908714,2.58654466233247,1.32643988239339,1.46668478797823,1.69745085775188,4.69380496577004,11.7254380209271,15.2347930167049,4.29294025287157,6.46304090835383,5.75808193086815,3.6674596791222,5.07976275618788,5.69860440157455,4.33947175744535,0,0,1.47529281905711,1.65562047782839,5.13761887960934,2.57865710502847,7.86887737808042,5.30188947129183,0.631016438832513,0.390438744296638,0.646270193198397,0,0,0,0,1.16902343164525,1.97643888973262,1.92792789853084,5.39372323791421,10.6839362200353,14.6598263418218,15.6721616823909,3.98235415019888,1.45668381692989,0.604647113929502,1.69744571780308,5.31543407185391,8.60818414242997,15.247269296925,13.4507479906677,19.250858432775,12.3254335594968,7.37930260024991,11.3449097573006,0.340439605753788,1.26042765821917,1.94038025674132,2.35770738534752,3.72414490648775,4.63758925765383,3.9491764944509,1.522324745573,225.754183157289,414.343530609632,1.32317038832977,14.5099902588502,3.87514624070173,4.04096597018644,6.2073618881631,7.2221995887827,17.488850197791,1.48340241608408,0.170870880797853,2.68302928352189,3.1483069652851,0.565105371014073,0.27338845544205,0,3.0596117398894,1.95932033253121,2.9021994498929,9.54670618015114,1.58167996790568,1.62655573701479,3.99619761040665,3.97267762427491,10.0446779323242,19.8250589185686,20.91132429851,17.0141362289619,7.38805347763219,1.24267862617385,0,0.897099276263873,2.31641886639937,3.50012139019286,3.7456348808542,5.74450826668646,6.92407708009948,5.9894017028217,2.09718688851422,0.241584120826006,0,6.32022241256356,1.21635129174099,2.56777392912068,4.02754551231165,5.54982756569192,5.36439657909415,4.80781798079875,6.79371825003055,5.35122184725182,2.89585865288999,4.2346997757473,7.01696741326217,5.58028681513911,7.01261413089414,2.26730383615211,0,0.538283139656854,2.01461539636894,2.51146472241848,206.638405471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| |||
|short_description=p1@Tnfrsf11b | |||
}} | |||
Revision as of 10:34, 13 September 2013
| Short description: | p1@Tnfrsf11b |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Tnfrsf11b_5end |
| Coexpression cluster: | MCL_coexpression_mm9:31 |
| Association with transcript: | 171bp_to_ENSMUST00000079772, NM_008764, uc007vrk.1_5end |
| EntrezGene: | Tnfrsf11b |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 1.76e-11 | 118 |
| endoderm | 1.76e-11 | 118 |
| presumptive endoderm | 1.76e-11 | 118 |
| digestive system | 1.79e-10 | 116 |
| digestive tract | 1.79e-10 | 116 |
| primitive gut | 1.79e-10 | 116 |
| subdivision of digestive tract | 1.51e-09 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
