FFCP PHASE1:Hg19::chr4:88928828..88928841,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5311|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9009|TSSclassifier=S|UniProt=Q13563|association_with_transcript=8bp_to_ENST00000237596,uc003hre.2_5end|coexpression_cluster_id=C470|description=CAGE_peak_3_at_PKD2_5end|id=chr4:88928828..88928841,+|ontology_enrichment_celltype=CL:0002334!2.27e-10!12;CL:0000136!1.58e-09!15|ontology_enrichment_celltype_v019=CL:0002334;8.29e-25;12!CL:0002615;7.18e-20;3!CL:0002579;7.41e-20;3!CL:0002580;5.76e-19;3!CL:0000136;3.92e-17;13!CL:0002617;1.82e-13;2!CL:0000197;9.25e-10;6!CL:0000098;9.25e-10;6!CL:0002167;9.25e-10;6!CL:0002616;6.59e-08;1!CL:0002581;8.26e-08;1!CL:1000306;8.19e-07;4!CL:0002547;8.19e-07;4|ontology_enrichment_celltype_v019_2=CL:0002334,5.92e-25,12;CL:0002579,6.97e-20,3;CL:0002615,7.42e-20,3;CL:0000136,1.31e-19,15;CL:0002580,3.32e-19,3;CL:0002617,2.06e-13,2;CL:0000197,8.72e-10,6;CL:0000098,8.72e-10,6;CL:0002167,8.72e-10,6;CL:0002616,6.59e-08,1;CL:0002581,8.54e-08,1;CL:1000306,9.78e-07,4;CL:0002547,9.78e-07,4|ontology_enrichment_development_v019=UBERON:0005062;8.19e-07;4!UBERON:0007284;8.19e-07;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2513;1.72e-07;1!DOID:4235;3.20e-07;1|ontology_enrichment_disease_v019_2=DOID:2513,1.51e-07,1;DOID:4235,2.50e-07,1|ontology_enrichment_uberon=UBERON:0003688!1.19e-09!6;UBERON:0002358!1.19e-09!6;UBERON:0003684!1.19e-09!6;UBERON:0001178!1.19e-09!6|ontology_enrichment_uberon_v019=UBERON:0003688;6.36e-38;6!UBERON:0002358;6.36e-38;6!UBERON:0003684;6.36e-38;6!UBERON:0001178;6.36e-38;6!UBERON:0004457;3.99e-25;9!UBERON:0000042;3.99e-25;9!UBERON:0000310;2.98e-15;10!UBERON:0005406;5.00e-14;2!UBERON:0001443;7.55e-14;11!UBERON:0003978;8.23e-09;3!UBERON:0000946;8.23e-09;3!UBERON:0006834;3.20e-07;1!UBERON:0002135;3.20e-07;1!UBERON:0002146;3.20e-07;1!UBERON:0005623;3.20e-07;1!UBERON:0004797;8.19e-07;4!UBERON:0000415;8.19e-07;4!UBERON:0007240;8.19e-07;4!UBERON:0005742;8.19e-07;4!UBERON:0005734;8.19e-07;4!UBERON:0004664;8.19e-07;4!UBERON:0004663;8.19e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.18e-38,6;UBERON:0002358,6.18e-38,6;UBERON:0003684,6.18e-38,6;UBERON:0001178,6.18e-38,6;UBERON:0004457,1.02e-18,12;UBERON:0000042,1.02e-18,12;UBERON:0000310,2.42e-15,10;UBERON:0005406,5.17e-14,2;UBERON:0001443,6.25e-14,11;UBERON:0004797,1.30e-13,7;UBERON:0004923,4.95e-11,66;UBERON:0003978,7.91e-09,3;UBERON:0009751,7.91e-09,3;UBERON:0000946,7.91e-09,3;UBERON:0002523,7.91e-09,3;UBERON:0005983,7.91e-09,3;UBERON:0002165,7.91e-09,3;UBERON:0002062,7.91e-09,3;UBERON:0007280,7.91e-09,3;UBERON:0002146,2.21e-07,1;UBERON:0005623,2.21e-07,1;UBERON:0006834,2.66e-07,1;UBERON:0002135,4.34e-07,1;UBERON:0000415,9.78e-07,4;UBERON:0007240,9.78e-07,4;UBERON:0005742,9.78e-07,4;UBERON:0005734,9.78e-07,4;UBERON:0004664,9.78e-07,4;UBERON:0004663,9.78e-07,4|phase1_expression=4.36028110249336,2.14100523890983,9.3029906703341,6.00439790118782,4.46961094427288,12.2127393374052,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.619412741790207,0,0,0.236482229888585,0.689491361473237,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,1.30059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0.175669571386252,0.589405839739707,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.13967460498122,1.19168262731897,0.286836620748814,0.354668382198357,0.560677600142307,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0.300476117813194,0.113432183160021,0.358779271377724,0,0,0,0,0.772921620136887,0.558350568994769,0,0.292311015483596,0,0,0.161646056818812,0.355009592516614,0.302256294682921,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.482022059766964,0,0,0.237270619111097,0,0.392442930250692,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0.600686115687835,0,0,0,0.07333828582095,0.129271715757778,0,0,1.06375246633948,2.08014873822732,0,0,0,0.857867961948885,0,0,0,0.355391948742546,0,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,0.718874566474748,0,0,2.31650090668127,0.410952645100767,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0.24538298343828,0,0,3.32753378449291,3.39015078714607,0.788512075169673,1.40569697991256,0,0,0,0,0.368738337083406,0.173767228936166,0,0,0,0,0,0,0,0.30239029332968,4.96215615637554,2.60885354589706,1.96462066103151,6.40695746278505,5.62877973973374,7.88184213603677,7.42090332224955,0,0.355123450626254,0.164254312027618,0,0.232420756919918,0,0,0,0.114814448164607,0,0.262248829918848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5311 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9009 | |||
|TSSclassifier=S | |||
|UniProt=Q13563 | |||
|association_with_transcript=8bp_to_ENST00000237596,uc003hre.2_5end | |||
|coexpression_cluster_id=C470 | |||
|description=CAGE_peak_3_at_PKD2_5end | |||
|id=chr4:88928828..88928841,+ | |||
|ontology_enrichment_celltype=CL:0002334!2.27e-10!12;CL:0000136!1.58e-09!15 | |||
|ontology_enrichment_celltype_v019=CL:0002334;8.29e-25;12!CL:0002615;7.18e-20;3!CL:0002579;7.41e-20;3!CL:0002580;5.76e-19;3!CL:0000136;3.92e-17;13!CL:0002617;1.82e-13;2!CL:0000197;9.25e-10;6!CL:0000098;9.25e-10;6!CL:0002167;9.25e-10;6!CL:0002616;6.59e-08;1!CL:0002581;8.26e-08;1!CL:1000306;8.19e-07;4!CL:0002547;8.19e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,5.92e-25,12;CL:0002579,6.97e-20,3;CL:0002615,7.42e-20,3;CL:0000136,1.31e-19,15;CL:0002580,3.32e-19,3;CL:0002617,2.06e-13,2;CL:0000197,8.72e-10,6;CL:0000098,8.72e-10,6;CL:0002167,8.72e-10,6;CL:0002616,6.59e-08,1;CL:0002581,8.54e-08,1;CL:1000306,9.78e-07,4;CL:0002547,9.78e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0005062;8.19e-07;4!UBERON:0007284;8.19e-07;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2513;1.72e-07;1!DOID:4235;3.20e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2513,1.51e-07,1;DOID:4235,2.50e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!1.19e-09!6;UBERON:0002358!1.19e-09!6;UBERON:0003684!1.19e-09!6;UBERON:0001178!1.19e-09!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;6.36e-38;6!UBERON:0002358;6.36e-38;6!UBERON:0003684;6.36e-38;6!UBERON:0001178;6.36e-38;6!UBERON:0004457;3.99e-25;9!UBERON:0000042;3.99e-25;9!UBERON:0000310;2.98e-15;10!UBERON:0005406;5.00e-14;2!UBERON:0001443;7.55e-14;11!UBERON:0003978;8.23e-09;3!UBERON:0000946;8.23e-09;3!UBERON:0006834;3.20e-07;1!UBERON:0002135;3.20e-07;1!UBERON:0002146;3.20e-07;1!UBERON:0005623;3.20e-07;1!UBERON:0004797;8.19e-07;4!UBERON:0000415;8.19e-07;4!UBERON:0007240;8.19e-07;4!UBERON:0005742;8.19e-07;4!UBERON:0005734;8.19e-07;4!UBERON:0004664;8.19e-07;4!UBERON:0004663;8.19e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,6.18e-38,6;UBERON:0002358,6.18e-38,6;UBERON:0003684,6.18e-38,6;UBERON:0001178,6.18e-38,6;UBERON:0004457,1.02e-18,12;UBERON:0000042,1.02e-18,12;UBERON:0000310,2.42e-15,10;UBERON:0005406,5.17e-14,2;UBERON:0001443,6.25e-14,11;UBERON:0004797,1.30e-13,7;UBERON:0004923,4.95e-11,66;UBERON:0003978,7.91e-09,3;UBERON:0009751,7.91e-09,3;UBERON:0000946,7.91e-09,3;UBERON:0002523,7.91e-09,3;UBERON:0005983,7.91e-09,3;UBERON:0002165,7.91e-09,3;UBERON:0002062,7.91e-09,3;UBERON:0007280,7.91e-09,3;UBERON:0002146,2.21e-07,1;UBERON:0005623,2.21e-07,1;UBERON:0006834,2.66e-07,1;UBERON:0002135,4.34e-07,1;UBERON:0000415,9.78e-07,4;UBERON:0007240,9.78e-07,4;UBERON:0005742,9.78e-07,4;UBERON:0005734,9.78e-07,4;UBERON:0004664,9.78e-07,4;UBERON:0004663,9.78e-07,4 | |||
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|short_description=p3@PKD2 | |||
}} |
Revision as of 12:15, 13 September 2013
Short description: | p3@PKD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_PKD2_5end |
Coexpression cluster: | C470_Adipocyte_Preadipocyte_Smooth_Fibroblast_aorta_normal_Mesenchymal |
Association with transcript: | 8bp_to_ENST00000237596, uc003hre.2_5end |
EntrezGene: | PKD2 |
HGNC: | 9009 |
UniProt: | Q13563 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 5.92e-25 | 12 |
omentum preadipocyte | 6.97e-20 | 3 |
adipocyte of omentum tissue | 7.42e-20 | 3 |
fat cell | 1.31e-19 | 15 |
preadipocyte of the breast | 3.32e-19 | 3 |
adipocyte of breast | 2.06e-13 | 2 |
receptor cell | 8.72e-10 | 6 |
sensory epithelial cell | 8.72e-10 | 6 |
olfactory epithelial cell | 8.72e-10 | 6 |
perirenal adipocyte cell | 6.59e-08 | 1 |
perirenal preadipocyte | 8.54e-08 | 1 |
fibroblast of tunica adventitia of artery | 9.78e-07 | 4 |
fibroblast of the aortic adventitia | 9.78e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
omentum | 6.18e-38 | 6 |
peritoneum | 6.18e-38 | 6 |
abdominal cavity | 6.18e-38 | 6 |
visceral peritoneum | 6.18e-38 | 6 |
cavity lining | 1.02e-18 | 12 |
serous membrane | 1.02e-18 | 12 |
breast | 2.42e-15 | 10 |
perirenal fat | 5.17e-14 | 2 |
chest | 6.25e-14 | 11 |
blood vessel layer | 1.30e-13 | 7 |
organ component layer | 4.95e-11 | 66 |
valve | 7.91e-09 | 3 |
cardiac mesenchyme | 7.91e-09 | 3 |
cardial valve | 7.91e-09 | 3 |
tunica intima | 7.91e-09 | 3 |
heart layer | 7.91e-09 | 3 |
endocardium | 7.91e-09 | 3 |
endocardial cushion | 7.91e-09 | 3 |
presumptive endocardium | 7.91e-09 | 3 |
pulmonary valve | 2.21e-07 | 1 |
semi-lunar valve | 2.21e-07 | 1 |
uterus or analog | 2.66e-07 | 1 |
mitral valve | 4.34e-07 | 1 |
artery wall | 9.78e-07 | 4 |
tunica adventitia of artery | 9.78e-07 | 4 |
adventitia | 9.78e-07 | 4 |
tunica adventitia of blood vessel | 9.78e-07 | 4 |
aorta tunica adventitia | 9.78e-07 | 4 |
aorta wall | 9.78e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
basal cell carcinoma | 1.51e-07 | 1 |
spindle cell sarcoma | 2.50e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.