FFCP PHASE1:Mm9::chr17:25893598..25893610,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:25893598..25893610,+|id=chr17:25893598..25893610,+|ontology_enrichment_celltype=CL:0000066!1.02e-13!25;CL:0000473!1.25e-12!3;CL:0000627!1.25e-12!3;CL:0000682!1.25e-12!3;CL:0002076!1.44e-11!15;CL:0000068!1.45e-11!3;CL:0002202!1.45e-11!3;CL:0000069!1.45e-11!3;CL:0002632!1.45e-11!3;CL:0002368!1.45e-11!3;CL:0000307!1.45e-11!3;CL:0000377!1.45e-11!3;CL:0000239!1.36e-10!6;CL:0000677!1.36e-10!6;CL:0000212!1.36e-10!6;CL:0000584!1.36e-10!6;CL:0000075!4.36e-09!7;CL:0000223!1.90e-08!20;CL:0002563!4.52e-07!9;CL:0002251!4.52e-07!9|ontology_enrichment_celltype_v019_2=CL:0000682,1.76e-25,3;CL:0000239,8.22e-22,6;CL:0000677,8.22e-22,6;CL:0000584,8.22e-22,6;CL:0000066,3.18e-20,25;CL:0000075,9.31e-19,7;CL:0002563,1.12e-14,9;CL:0002251,1.12e-14,9;CL:0002076,2.27e-13,15;CL:0000473,2.65e-11,7;CL:0000223,4.82e-10,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.02e-11!15;UBERON:0003126!1.45e-11!3;UBERON:0001005!1.45e-11!3;UBERON:0007196!1.45e-11!3;UBERON:0001558!1.45e-11!3;UBERON:0001962!1.79e-08!2;UBERON:0001961!1.79e-08!2;UBERON:0001744!1.79e-08!2;UBERON:0001242!3.10e-07!13;UBERON:0000060!3.10e-07!13;UBERON:0001262!3.10e-07!13;UBERON:0004786!3.10e-07!13;UBERON:0000072!3.25e-07!27;UBERON:0003350!4.52e-07!9;UBERON:0004808!4.52e-07!9;UBERON:0001277!4.52e-07!9;UBERON:0004923!5.65e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.56e-25,15;UBERON:0001962,1.72e-16,2;UBERON:0001961,1.72e-16,2;UBERON:0001744,1.72e-16,2;UBERON:0004923,7.19e-16,24;UBERON:0001242,1.80e-15,13;UBERON:0001262,1.80e-15,13;UBERON:0004786,1.80e-15,13;UBERON:0003350,1.12e-14,9;UBERON:0004808,1.12e-14,9;UBERON:0001277,1.12e-14,9;UBERON:0000485,4.53e-12,11;UBERON:0002465,2.51e-11,3;UBERON:0003199,5.27e-09,1|phase1_expression=0,14.3079917132138,13.1949779422965,0,0,9.9048770428015,7.70921713965235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55968933452967,5.73523202667925,13.7815671387605,24.1226717849082,19.39241094173,0,0,5.98672378769323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0.0762068066549998,0,0.0974578807397524,0.288635524920988,0.233753804363138,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr17:25893598..25893610,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:25893598..25893610,+ | |||
|id=chr17:25893598..25893610,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.02e-13!25;CL:0000473!1.25e-12!3;CL:0000627!1.25e-12!3;CL:0000682!1.25e-12!3;CL:0002076!1.44e-11!15;CL:0000068!1.45e-11!3;CL:0002202!1.45e-11!3;CL:0000069!1.45e-11!3;CL:0002632!1.45e-11!3;CL:0002368!1.45e-11!3;CL:0000307!1.45e-11!3;CL:0000377!1.45e-11!3;CL:0000239!1.36e-10!6;CL:0000677!1.36e-10!6;CL:0000212!1.36e-10!6;CL:0000584!1.36e-10!6;CL:0000075!4.36e-09!7;CL:0000223!1.90e-08!20;CL:0002563!4.52e-07!9;CL:0002251!4.52e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,1.76e-25,3;CL:0000239,8.22e-22,6;CL:0000677,8.22e-22,6;CL:0000584,8.22e-22,6;CL:0000066,3.18e-20,25;CL:0000075,9.31e-19,7;CL:0002563,1.12e-14,9;CL:0002251,1.12e-14,9;CL:0002076,2.27e-13,15;CL:0000473,2.65e-11,7;CL:0000223,4.82e-10,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.02e-11!15;UBERON:0003126!1.45e-11!3;UBERON:0001005!1.45e-11!3;UBERON:0007196!1.45e-11!3;UBERON:0001558!1.45e-11!3;UBERON:0001962!1.79e-08!2;UBERON:0001961!1.79e-08!2;UBERON:0001744!1.79e-08!2;UBERON:0001242!3.10e-07!13;UBERON:0000060!3.10e-07!13;UBERON:0001262!3.10e-07!13;UBERON:0004786!3.10e-07!13;UBERON:0000072!3.25e-07!27;UBERON:0003350!4.52e-07!9;UBERON:0004808!4.52e-07!9;UBERON:0001277!4.52e-07!9;UBERON:0004923!5.65e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.56e-25,15;UBERON:0001962,1.72e-16,2;UBERON:0001961,1.72e-16,2;UBERON:0001744,1.72e-16,2;UBERON:0004923,7.19e-16,24;UBERON:0001242,1.80e-15,13;UBERON:0001262,1.80e-15,13;UBERON:0004786,1.80e-15,13;UBERON:0003350,1.12e-14,9;UBERON:0004808,1.12e-14,9;UBERON:0001277,1.12e-14,9;UBERON:0000485,4.53e-12,11;UBERON:0002465,2.51e-11,3;UBERON:0003199,5.27e-09,1 | |||
|phase1_expression=0,14.3079917132138,13.1949779422965,0,0,9.9048770428015,7.70921713965235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55968933452967,5.73523202667925,13.7815671387605,24.1226717849082,19.39241094173,0,0,5.98672378769323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432982082022428,1.01343946190039,0.505524445014783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0.0762068066549998,0,0.0974578807397524,0.288635524920988,0.233753804363138,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:25893598..25893610,+ | |||
}} |
Revision as of 13:47, 13 September 2013
Short description: | p@chr17:25893598..25893610, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:25893598..25893610, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 1.76e-25 | 3 |
brush border epithelial cell | 8.22e-22 | 6 |
gut absorptive cell | 8.22e-22 | 6 |
enterocyte | 8.22e-22 | 6 |
epithelial cell | 3.18e-20 | 25 |
columnar/cuboidal epithelial cell | 9.31e-19 | 7 |
intestinal epithelial cell | 1.12e-14 | 9 |
epithelial cell of alimentary canal | 1.12e-14 | 9 |
endo-epithelial cell | 2.27e-13 | 15 |
defensive cell | 2.65e-11 | 7 |
endodermal cell | 4.82e-10 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.56e-25 | 15 |
gut-associated lymphoid tissue | 1.72e-16 | 2 |
mucosa-associated lymphoid tissue | 1.72e-16 | 2 |
lymphoid tissue | 1.72e-16 | 2 |
organ component layer | 7.19e-16 | 24 |
intestinal mucosa | 1.80e-15 | 13 |
wall of intestine | 1.80e-15 | 13 |
gastrointestinal system mucosa | 1.80e-15 | 13 |
epithelium of mucosa | 1.12e-14 | 9 |
gastrointestinal system epithelium | 1.12e-14 | 9 |
intestinal epithelium | 1.12e-14 | 9 |
simple columnar epithelium | 4.53e-12 | 11 |
lymphoid system | 2.51e-11 | 3 |
egg chamber | 5.27e-09 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.