FFCP PHASE1:Mm9::chr17:71824700..71824711,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=74355|HGNC=|UniProt=Q6P5D8|association_with_transcript=-17bp_to_ENSMUST00000024850,ENSMUST00000127430,NM_028887,uc008dmh.1_5end|description=CAGE_peak_3_at_Smchd1_5end|id=chr17:71824700..71824711,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!4.30e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.75e-08,29;UBERON:0005057,8.75e-08,29;UBERON:0000077,1.68e-07,35;UBERON:0000153,7.13e-07,43;UBERON:0001048,8.84e-07,134|phase1_expression=1.12104192973356,0.348975407639361,0.454999239389536,0.30246421130683,0,1.00727563147134,0.934450562382103,3.61545305636414,0.703943610758334,1.40438715793196,0.856089841127525,0.957265907944037,3.76641605848653,2.62261207256992,4.33042690360362,4.45445588257617,2.79824751251259,5.99378114180652,6.85572168028694,3.39511721438424,1.36069264241712,5.26242041364692,4.4403964153619,1.11994695955385,0.91763712426868,0.57423196411502,1.29228598847722,0.215471232685889,0.570070258369122,0,0.221730510655305,1.27006134691926,1.84519436275371,15.8481681015439,1.1554064790051,1.32987716286794,1.42918549383658,0.418531630736908,2.3440060335714,0.523523743973798,0,0.683045484958446,1.94204141212461,1.51076181570693,1.31790010585369,1.46837401729345,0.782391344348039,0.218025156380447,0.659058548203415,0.58328969722285,0.419959264876088,0,6.54352163625172,5.07753499407941,5.37750078627942,0.514518872071894,0.286533439938757,0.515672092277442,1.21389876515759,0.528990979272033,0,0,0,0.449949858640699,0,0,0.299600110518405,0,0.829516898467821,0.810035629990144,0.420649922702764,0.571301968807607,0.441737081903227,0.857435594504678,0.575072826109418,0,0,0.638436690425939,0.46081959976873,1.05509030184155,0.548925861614458,1.04182674111352,0,0.56276261003168,0.61119299110724,0.883885756421003,1.42371680799103,0.745597783301202,0.454357159999104,1.88928900266964,0.869593466105033,0.860423876981386,0,0,0.649776417447669,0.896053774194671,0.702222100658759,2.21559419351475,0.779358013808606,2.47337702157238,1.40843419776681,2.56652954828636,2.54805239706646,7.11066703153331,1.08245520505607,0.760079596425296,1.01104889002957,0.45673551887624,9.58070169494535,1.33597925158342,1.73485326766136,2.13125834818499,1.38369298353635,2.26083960828934,1.52865319276416,1.25666591329675,0.988779870937496,1.01219549843938,3.5384422077995,3.23533699894818,2.42925670306433,1.45462575940567,3.72783522436244,1.75668478206928,1.8850203613211,1.53274233125155,3.95389910869537,1.19980546198682,2.66847476853436,0.449371918214468,1.83000241127451,1.13088916901578,0.695297280769106,1.27857728665165,0.41557608911912,0.973447578406546,2.95334155165917,2.36373244159177,3.53811861807145,0.631325567659422,2.21204753036596,2.06911893990126,2.34080768746954,1.80845781402858,2.38127747029647,3.58718416797579,3.65436725782942,2.32833033665114,2.58681591519411,4.53854592402766,3.34307135911503,3.28793598641362,2.78047249225598,5.2237824978325,3.08673204611915,3.38358253591438,2.80885274925294,3.08817488537658,0.852490498186778,3.52113813310353,3.98694301967864,1.44049649168812,2.3674473558521,2.75469924446365,2.00547246753592,1.39520366850245,2.95100741539581,1.86824547787471,3.29119699826961,1.14917224855367,1.54030738137126,1.31579988682799,0.439100230582101,0.805238512562231,1.47202963994889,1.85228302282712,0,1.05780226665418,1.91959425481711,3.25131340604614,4.25262622362908,3.22693639397348,2.2237804384487,1.52180500890047,0.949058123089023,1.4822905925161,0.754005626400808,1.79060824837036,1.55971269695296,2.69645822596266,0.864552199498777,0.597423819763102,1.32767530667157,3.99869794134051,2.25415471346161,4.48032921259691,1.93952487167626,2.87556861550306,1.7706230394792,1.32849133181642,0.941992367048249,0.740382983530803,0.592905254174298,4.33797274861845,5.70021085828289,3.37293168577281,4.26006254915856,2.894125917029,2.5462585178142,2.30156909960649,2.7562988551756,1.64736847912849,2.87536413054709,2.23284568601102,0.936113019343682,0.757736633841335,0.538192240565737,0,1.84753190166605,3.03186258832776,5.37784422258685,3.73439188705414,3.98973422090454,3.1826188913945,2.61848004974615,0.780534591431195,4.09851374676097,2.6575762757853,2.23236676120482,2.13022309130459,1.55416483679306,1.59113964439663,0,0.54390568381871,1.96705709207614,1.65562047782839,0.80275294993896,0.586058432961016,1.47541450839008,0.504941854408746,1.57754109708128,0.780877488593277,2.58508077279359,1.91175038362042,0.445597348164788,1.41538265394416,2.02405350837447,2.92255857911312,1.97643888973262,1.92792789853084,1.84522110770749,1.42452482933804,3.58351310577867,1.81467135269789,0,1.94224508923985,1.51161778482376,1.69744571780308,0.885905678642318,2.76691633149535,2.58428293168221,1.09060118843252,0.712994756769443,1.58018378967908,0,0,1.36175842301515,2.16073312837572,1.16422815404479,1.71469628025274,3.3694644392032,2.14042581122485,2.79733335023606,0.608929898229199,4.22409074514679,2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| ||
|EntrezGene=74355 | |||
|HGNC= | |||
|UniProt=Q6P5D8 | |||
|association_with_transcript=-17bp_to_ENSMUST00000024850,ENSMUST00000127430,NM_028887,uc008dmh.1_5end | |||
|description=CAGE_peak_3_at_Smchd1_5end | |||
|id=chr17:71824700..71824711,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.30e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,8.75e-08,29;UBERON:0005057,8.75e-08,29;UBERON:0000077,1.68e-07,35;UBERON:0000153,7.13e-07,43;UBERON:0001048,8.84e-07,134 | |||
|phase1_expression=1.12104192973356,0.348975407639361,0.454999239389536,0.30246421130683,0,1.00727563147134,0.934450562382103,3.61545305636414,0.703943610758334,1.40438715793196,0.856089841127525,0.957265907944037,3.76641605848653,2.62261207256992,4.33042690360362,4.45445588257617,2.79824751251259,5.99378114180652,6.85572168028694,3.39511721438424,1.36069264241712,5.26242041364692,4.4403964153619,1.11994695955385,0.91763712426868,0.57423196411502,1.29228598847722,0.215471232685889,0.570070258369122,0,0.221730510655305,1.27006134691926,1.84519436275371,15.8481681015439,1.1554064790051,1.32987716286794,1.42918549383658,0.418531630736908,2.3440060335714,0.523523743973798,0,0.683045484958446,1.94204141212461,1.51076181570693,1.31790010585369,1.46837401729345,0.782391344348039,0.218025156380447,0.659058548203415,0.58328969722285,0.419959264876088,0,6.54352163625172,5.07753499407941,5.37750078627942,0.514518872071894,0.286533439938757,0.515672092277442,1.21389876515759,0.528990979272033,0,0,0,0.449949858640699,0,0,0.299600110518405,0,0.829516898467821,0.810035629990144,0.420649922702764,0.571301968807607,0.441737081903227,0.857435594504678,0.575072826109418,0,0,0.638436690425939,0.46081959976873,1.05509030184155,0.548925861614458,1.04182674111352,0,0.56276261003168,0.61119299110724,0.883885756421003,1.42371680799103,0.745597783301202,0.454357159999104,1.88928900266964,0.869593466105033,0.860423876981386,0,0,0.649776417447669,0.896053774194671,0.702222100658759,2.21559419351475,0.779358013808606,2.47337702157238,1.40843419776681,2.56652954828636,2.54805239706646,7.11066703153331,1.08245520505607,0.760079596425296,1.01104889002957,0.45673551887624,9.58070169494535,1.33597925158342,1.73485326766136,2.13125834818499,1.38369298353635,2.26083960828934,1.52865319276416,1.25666591329675,0.988779870937496,1.01219549843938,3.5384422077995,3.23533699894818,2.42925670306433,1.45462575940567,3.72783522436244,1.75668478206928,1.8850203613211,1.53274233125155,3.95389910869537,1.19980546198682,2.66847476853436,0.449371918214468,1.83000241127451,1.13088916901578,0.695297280769106,1.27857728665165,0.41557608911912,0.973447578406546,2.95334155165917,2.36373244159177,3.53811861807145,0.631325567659422,2.21204753036596,2.06911893990126,2.34080768746954,1.80845781402858,2.38127747029647,3.58718416797579,3.65436725782942,2.32833033665114,2.58681591519411,4.53854592402766,3.34307135911503,3.28793598641362,2.78047249225598,5.2237824978325,3.08673204611915,3.38358253591438,2.80885274925294,3.08817488537658,0.852490498186778,3.52113813310353,3.98694301967864,1.44049649168812,2.3674473558521,2.75469924446365,2.00547246753592,1.39520366850245,2.95100741539581,1.86824547787471,3.29119699826961,1.14917224855367,1.54030738137126,1.31579988682799,0.439100230582101,0.805238512562231,1.47202963994889,1.85228302282712,0,1.05780226665418,1.91959425481711,3.25131340604614,4.25262622362908,3.22693639397348,2.2237804384487,1.52180500890047,0.949058123089023,1.4822905925161,0.754005626400808,1.79060824837036,1.55971269695296,2.69645822596266,0.864552199498777,0.597423819763102,1.32767530667157,3.99869794134051,2.25415471346161,4.48032921259691,1.93952487167626,2.87556861550306,1.7706230394792,1.32849133181642,0.941992367048249,0.740382983530803,0.592905254174298,4.33797274861845,5.70021085828289,3.37293168577281,4.26006254915856,2.894125917029,2.5462585178142,2.30156909960649,2.7562988551756,1.64736847912849,2.87536413054709,2.23284568601102,0.936113019343682,0.757736633841335,0.538192240565737,0,1.84753190166605,3.03186258832776,5.37784422258685,3.73439188705414,3.98973422090454,3.1826188913945,2.61848004974615,0.780534591431195,4.09851374676097,2.6575762757853,2.23236676120482,2.13022309130459,1.55416483679306,1.59113964439663,0,0.54390568381871,1.96705709207614,1.65562047782839,0.80275294993896,0.586058432961016,1.47541450839008,0.504941854408746,1.57754109708128,0.780877488593277,2.58508077279359,1.91175038362042,0.445597348164788,1.41538265394416,2.02405350837447,2.92255857911312,1.97643888973262,1.92792789853084,1.84522110770749,1.42452482933804,3.58351310577867,1.81467135269789,0,1.94224508923985,1.51161778482376,1.69744571780308,0.885905678642318,2.76691633149535,2.58428293168221,1.09060118843252,0.712994756769443,1.58018378967908,0,0,1.36175842301515,2.16073312837572,1.16422815404479,1.71469628025274,3.3694644392032,2.14042581122485,2.79733335023606,0.608929898229199,4.22409074514679,2.75381692122966,1.7642271844397,2.80306630000516,2.26050197374268,3.43783672090488,1.90995750405018,2.79039529566604,0.291480836629851,0.370850604021019,3.2465467351592,2.27025554759545,3.88908507476395,4.70921142511728,5.05768642567793,5.0331198105435,3.56954702987096,3.07893195112048,3.73139929271944,0,4.11236791655476,2.43983360552218,2.26811215725783,1.46361807210128,1.9652630737156,2.29269388854195,2.39695021603474,2.6175594198403,0.518459893167171,1.86401793926078,0.56369293868419,2.39226473670366,2.31641886639937,2.52786544847262,1.93739735216597,1.01373675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| |||
|short_description=p3@Smchd1 | |||
}} | |||
Revision as of 15:15, 13 September 2013
| Short description: | p3@Smchd1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Smchd1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -17bp_to_ENSMUST00000024850, ENSMUST00000127430, NM_028887, uc008dmh.1_5end |
| EntrezGene: | Smchd1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| hemopoietic organ | 8.75e-08 | 29 |
| immune organ | 8.75e-08 | 29 |
| mixed endoderm/mesoderm-derived structure | 1.68e-07 | 35 |
| anterior region of body | 7.13e-07 | 43 |
| primordium | 8.84e-07 | 134 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
