Personal tools

UBERON:0004177

From FANTOM5_SSTAR

Jump to: navigation, search

Name:hemopoietic organ
Namespace:FANTOM
Definition:"Organ that is part of the hematopoietic system." [GOC:Obol]
Xrefs:
links:

BTO:0004605

FMA:7143
Synonyms: "haematological system organ" EXACT [OBOL:automatic]
"haemopoietic system organ" EXACT [OBOL:automatic]
"hematopoeitic or lymphoid organ" NARROW []
"hematopoietic system organ" EXACT [OBOL:automatic]
"lymphoid organ" NARROW [BTO:0004605, FMA:7143]
"organ of haematological system" EXACT [OBOL:automatic]
"organ of haemopoietic system" EXACT [OBOL:automatic]
"organ of hematopoietic system" EXACT [OBOL:automatic]
"organ of organa haemopoietica" EXACT [OBOL:automatic]
"organa haemopoietica organ" EXACT [OBOL:automatic]
Comments:note that the FMA class 'lymphoid organ' is a general anatomical term
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000062(organ),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0002390(hematopoietic system)



Children

is a:UBERON:0002106 (spleen),UBERON:0002370 (thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004177 (hemopoietic organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data