UBERON:0004177
From FANTOM5_SSTAR
Name: | hemopoietic organ | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "Organ that is part of the hematopoietic system." [GOC:Obol] | ||
Xrefs: |
| ||
Synonyms: |
"haematological system organ" EXACT [OBOL:automatic] "haemopoietic system organ" EXACT [OBOL:automatic] "hematopoeitic or lymphoid organ" NARROW [] "hematopoietic system organ" EXACT [OBOL:automatic] "lymphoid organ" NARROW [BTO:0004605, FMA:7143] "organ of haematological system" EXACT [OBOL:automatic] "organ of haemopoietic system" EXACT [OBOL:automatic] "organ of hematopoietic system" EXACT [OBOL:automatic] "organ of organa haemopoietica" EXACT [OBOL:automatic] "organa haemopoietica organ" EXACT [OBOL:automatic] | ||
Comments: | note that the FMA class 'lymphoid organ' is a general anatomical term | ||
Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000062(organ),UBERON:0004120(mesoderm-derived structure) |
---|---|
part_of: | UBERON:0002390(hematopoietic system) |
Children
is a: | UBERON:0002106 (spleen),UBERON:0002370 (thymus) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10095-102C5
- 10097-102C7
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10803-111A2 (thymic carcinoma cell line:Ty-82)
- 1271-21F2 (spleen, embryo E18)
- 1273-19G4 (thymus, embryo E18)
... further results Mouse (Mus musculus)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10095-102C5
- 10097-102C7
- 10424-106D1 (splenic lymphoma with villous lymphocytes cell line:SLVL)
- 10803-111A2 (thymic carcinoma cell line:Ty-82)
- 1271-21F2 (spleen, embryo E18)
- 1273-19G4 (thymus, embryo E18)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004177 (hemopoietic organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data