FFCP PHASE1:Mm9::chr1:188529143..188529174,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21808|HGNC=|MCL_coexpression_id=2299|UniProt=E9Q1R0|association_with_transcript=0bp_to_ENSMUST00000085692_5end|description=CAGE_peak_2_at_Tgfb2_5end|id=chr1:188529143..188529174,-|ontology_enrichment_celltype=CL:0000107!7.18e-07!9|ontology_enrichment_celltype_v019_2=CL:0000107,6.62e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!2.73e-09!333;UBERON:0005153!7.61e-08!17;UBERON:0002048!4.53e-07!14;UBERON:0000117!4.53e-07!14;UBERON:0000171!4.53e-07!14;UBERON:0000170!4.53e-07!14;UBERON:0005597!4.53e-07!14;UBERON:0000118!4.53e-07!14;UBERON:0000922!6.01e-07!328;UBERON:0002410!7.18e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0005157,1.11e-09,20;UBERON:0005153,6.91e-08,17;UBERON:0002048,4.16e-07,14;UBERON:0000117,4.16e-07,14;UBERON:0000171,4.16e-07,14;UBERON:0000170,4.16e-07,14;UBERON:0005597,4.16e-07,14;UBERON:0000118,4.16e-07,14;UBERON:0002410,6.62e-07,9|phase1_expression=25.4636666896622,0,0.454999239389536,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0.297872853602656,2.35079810225042,0.159992422793407,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2406895188495,15.4092935453662,21.8420635072401,2.34717403304412,38.8084778357195,33.3922997756397,48.2186149704223,11.6188729949051,21.5628846547457,0,0,0,11.0621557495457,27.2206767941819,23.7209162447623,3.43937983461316,3.70293685490423,6.97214543856797,2.37191172448392,1.77858959222228,4.04954872776629,0.988866362566974,3.5524005747305,7.49000276296012,7.68436610643109,3.42175720617976,3.24014251996058,3.15487442027073,10.8547374073445,10.1599528837742,1.46988959057945,1.62937300731002,0,4.40463523997555,6.51205424234457,6.75868746327471,3.95658863190582,4.7573574673253,3.12548022334056,1.11673199600552,5.6276261003168,5.34793867218835,11.7851434189467,12.5287079103211,10.4383689662168,1.8931548333296,1.5870027622425,37.1026545538148,1.72084775396277,1.3599426674155,0,0.649776417447669,0,4.77511028447956,16.7021716126497,10.1316541795119,15.1936017039446,43.3797732912176,68.0130330295885,61.153257529595,56.8853362522665,3.24736561516821,4.05375784760158,3.0331466700887,1.48439043634778,0.776813650941515,0.890652834388949,10.9295755862666,3.95805121805784,4.15107895060905,2.56228488939458,8.46638691377075,1.0053327306374,12.8541383221874,12.4355446951124,4.42305275974937,21.6767578929528,11.9254419968613,13.091631834651,0,2.34224637609238,2.09446706813455,1.53274233125155,0,0,0,3.2953940669061,7.32000964509802,4.39790232395025,5.04090528557602,1.27857728665165,3.1168206683934,4.05603157669394,27.2929495118848,8.45967400148633,5.30717792710717,13.2578369208479,28.4963770088321,16.3230494147766,30.2504378072987,28.031096117443,29.6639136299789,29.5942693858003,24.6435535592087,24.5768202202065,10.7783996466421,33.0935640293684,32.3750068461666,26.0842921588814,28.360819421011,30.2979384874285,29.01528123352,18.7092210809384,0,0,0,25.2693442493312,21.3418714582798,22.8678818055489,27.4623893278844,19.8731874064878,15.2724441758504,17.2075119115302,15.2915838797783,18.2153934092784,11.1900697941167,10.1783827729039,8.51222500231485,6.28659945928929,6.14740322814942,6.30770168173747,23.131894342054,19.4489717396848,0,1.32225283331772,20.6889603019177,16.2565670302307,11.3403365963442,4.63872106633688,4.66993892074228,5.32631753115166,2.84717436926707,4.28217282282428,2.5133520880027,3.58121649674071,4.09424582950152,3.59527763461689,3.6743468478698,2.98711909881551,6.82804443431094,6.96915926919346,9.01661885384643,5.90588850751411,5.81857461502877,5.33032231166421,6.89278254654404,2.80459281161244,2.98297582898612,2.09775178667061,1.48226313543574,7.67487486294033,5.50365186316968,1.34917267430912,2.02860121388503,1.68824011826692,2.29163266603278,4.60313819921297,1.62135226775035,1.09824565275233,2.87536413054709,3.34926852901653,2.18426371180192,1.76805214562978,2.87035861635059,0,16.0735275444946,19.8965982359009,27.5410810187024,30.3843703537587,37.3157494778718,49.079333430452,32.8500224422699,23.4160377429359,41.6156780440344,47.1719788951891,40.0231469330293,17.0417847304368,18.3046080777849,13.7416605652436,0,0,18.1952781017043,21.7990029580739,4.49541651965817,4.33683240391152,3.44263385291018,15.1482556322624,35.652428794037,43.3387006169269,41.1458689669646,38.4739764703609,35.8705865272655,48.1230102341015,38.0522059574401,36.8242380968253,37.1570511269732,6.74774764485795,8.09058485687131,24.2169220987467,25.8990265372186,12.5377293459127,2.65490276679926,4.61283208694465,3.93020624054176,3.58349651536206,5.02013217897314,8.9156192903739,6.97756391554197,5.81653967164009,4.63446591900138,4.10847785316561,7.37930260024991,2.06271086496374,0,20.1668425315067,12.2890749593617,9.64516657642165,10.2857335512519,8.74007206250146,8.06290200950393,4.87143918583359,30.9766654644098,25.8435126453861,17.8628002424519,20.7756678706265,18.4069446433332,12.2435237604156,7.5204576721976,4.92422699235184,2.91480836629851,7.97328798645192,0.341741761595705,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| ||
|EntrezGene=21808 | |||
|HGNC= | |||
|MCL_coexpression_id=2299 | |||
|UniProt=E9Q1R0 | |||
|association_with_transcript=0bp_to_ENSMUST00000085692_5end | |||
|description=CAGE_peak_2_at_Tgfb2_5end | |||
|id=chr1:188529143..188529174,- | |||
|ontology_enrichment_celltype=CL:0000107!7.18e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,6.62e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.73e-09!333;UBERON:0005153!7.61e-08!17;UBERON:0002048!4.53e-07!14;UBERON:0000117!4.53e-07!14;UBERON:0000171!4.53e-07!14;UBERON:0000170!4.53e-07!14;UBERON:0005597!4.53e-07!14;UBERON:0000118!4.53e-07!14;UBERON:0000922!6.01e-07!328;UBERON:0002410!7.18e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005157,1.11e-09,20;UBERON:0005153,6.91e-08,17;UBERON:0002048,4.16e-07,14;UBERON:0000117,4.16e-07,14;UBERON:0000171,4.16e-07,14;UBERON:0000170,4.16e-07,14;UBERON:0005597,4.16e-07,14;UBERON:0000118,4.16e-07,14;UBERON:0002410,6.62e-07,9 | |||
|phase1_expression=25.4636666896622,0,0.454999239389536,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.23164502574065,0.297872853602656,2.35079810225042,0.159992422793407,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.2406895188495,15.4092935453662,21.8420635072401,2.34717403304412,38.8084778357195,33.3922997756397,48.2186149704223,11.6188729949051,21.5628846547457,0,0,0,11.0621557495457,27.2206767941819,23.7209162447623,3.43937983461316,3.70293685490423,6.97214543856797,2.37191172448392,1.77858959222228,4.04954872776629,0.988866362566974,3.5524005747305,7.49000276296012,7.68436610643109,3.42175720617976,3.24014251996058,3.15487442027073,10.8547374073445,10.1599528837742,1.46988959057945,1.62937300731002,0,4.40463523997555,6.51205424234457,6.75868746327471,3.95658863190582,4.7573574673253,3.12548022334056,1.11673199600552,5.6276261003168,5.34793867218835,11.7851434189467,12.5287079103211,10.4383689662168,1.8931548333296,1.5870027622425,37.1026545538148,1.72084775396277,1.3599426674155,0,0.649776417447669,0,4.77511028447956,16.7021716126497,10.1316541795119,15.1936017039446,43.3797732912176,68.0130330295885,61.153257529595,56.8853362522665,3.24736561516821,4.05375784760158,3.0331466700887,1.48439043634778,0.776813650941515,0.890652834388949,10.9295755862666,3.95805121805784,4.15107895060905,2.56228488939458,8.46638691377075,1.0053327306374,12.8541383221874,12.4355446951124,4.42305275974937,21.6767578929528,11.9254419968613,13.091631834651,0,2.34224637609238,2.09446706813455,1.53274233125155,0,0,0,3.2953940669061,7.32000964509802,4.39790232395025,5.04090528557602,1.27857728665165,3.1168206683934,4.05603157669394,27.2929495118848,8.45967400148633,5.30717792710717,13.2578369208479,28.4963770088321,16.3230494147766,30.2504378072987,28.031096117443,29.6639136299789,29.5942693858003,24.6435535592087,24.5768202202065,10.7783996466421,33.0935640293684,32.3750068461666,26.0842921588814,28.360819421011,30.2979384874285,29.01528123352,18.7092210809384,0,0,0,25.2693442493312,21.3418714582798,22.8678818055489,27.4623893278844,19.8731874064878,15.2724441758504,17.2075119115302,15.2915838797783,18.2153934092784,11.1900697941167,10.1783827729039,8.51222500231485,6.28659945928929,6.14740322814942,6.30770168173747,23.131894342054,19.4489717396848,0,1.32225283331772,20.6889603019177,16.2565670302307,11.3403365963442,4.63872106633688,4.66993892074228,5.32631753115166,2.84717436926707,4.28217282282428,2.5133520880027,3.58121649674071,4.09424582950152,3.59527763461689,3.6743468478698,2.98711909881551,6.82804443431094,6.96915926919346,9.01661885384643,5.90588850751411,5.81857461502877,5.33032231166421,6.89278254654404,2.80459281161244,2.98297582898612,2.09775178667061,1.48226313543574,7.67487486294033,5.50365186316968,1.34917267430912,2.02860121388503,1.68824011826692,2.29163266603278,4.60313819921297,1.62135226775035,1.09824565275233,2.87536413054709,3.34926852901653,2.18426371180192,1.76805214562978,2.87035861635059,0,16.0735275444946,19.8965982359009,27.5410810187024,30.3843703537587,37.3157494778718,49.079333430452,32.8500224422699,23.4160377429359,41.6156780440344,47.1719788951891,40.0231469330293,17.0417847304368,18.3046080777849,13.7416605652436,0,0,18.1952781017043,21.7990029580739,4.49541651965817,4.33683240391152,3.44263385291018,15.1482556322624,35.652428794037,43.3387006169269,41.1458689669646,38.4739764703609,35.8705865272655,48.1230102341015,38.0522059574401,36.8242380968253,37.1570511269732,6.74774764485795,8.09058485687131,24.2169220987467,25.8990265372186,12.5377293459127,2.65490276679926,4.61283208694465,3.93020624054176,3.58349651536206,5.02013217897314,8.9156192903739,6.97756391554197,5.81653967164009,4.63446591900138,4.10847785316561,7.37930260024991,2.06271086496374,0,20.1668425315067,12.2890749593617,9.64516657642165,10.2857335512519,8.74007206250146,8.06290200950393,4.87143918583359,30.9766654644098,25.8435126453861,17.8628002424519,20.7756678706265,18.4069446433332,12.2435237604156,7.5204576721976,4.92422699235184,2.91480836629851,7.97328798645192,0.341741761595705,5.15967169908056,2.03713980106683,0.753473828018764,0.683471138605126,0.228778173206523,0.339956859987711,0,0.138199973804424,4.77335309007557,17.0821436533813,8.74273708645449,7.23635783506068,7.73626695253534,8.29777742235475,7.55240339754996,7.60411792673091,3.66458318777641,3.75883422546199,100.035629406995,0,22.7265149986848,16.3803905552527,21.7785330945333,20.665571756437,20.6126473098749,28.2830945136267,9.50492009360836,3.67007705489988,0.724752362478018,2.30424005006292,1.89606672376907,6.48720688928525,4.62199307241723,1.16928740680016,1.79026695667481,0.993406773906324,0.961563596159751,0.590758108698309,0.605798699688886,0.609654453239999,0.705783295957884,0,0.673482891482306,0.350630706544707,11.5632495643758,2.44184548711471,0.269141569828427,0.839423081820392,12.7505132061246,63.0613117515971,10.6227942075014,28.9397311756739,9.02829787263654,3.3885110557024,2.30162618253588,4.01026859407578,4.46818274093588,0.68508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| |||
|short_description=p2@Tgfb2 | |||
}} | |||
Revision as of 20:02, 13 September 2013
| Short description: | p2@Tgfb2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Tgfb2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2299 |
| Association with transcript: | 0bp_to_ENSMUST00000085692_5end |
| EntrezGene: | Tgfb2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| autonomic neuron | 6.62e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| epithelial fold | 1.11e-09 | 20 |
| epithelial bud | 6.91e-08 | 17 |
| lung | 4.16e-07 | 14 |
| respiratory tube | 4.16e-07 | 14 |
| respiration organ | 4.16e-07 | 14 |
| pair of lungs | 4.16e-07 | 14 |
| lung primordium | 4.16e-07 | 14 |
| lung bud | 4.16e-07 | 14 |
| autonomic nervous system | 6.62e-07 | 9 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
