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UBERON:0000117

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Name:respiratory tube
Namespace:FANTOM
Definition:"A tube in the respiratory tract." [GO:0030323]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000025(tube),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0000065(respiratory tract)



Children

is a:UBERON:0002169 (alveolar sac),UBERON:0002185 (bronchus),UBERON:0003126 (trachea)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000117 (respiratory tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.5e-81FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_f3fbdab667fdcefe958295a8bd9d9513p4@Tbx4
3.5e-81FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_f3fbdab667fdcefe958295a8bd9d9513p4@Tbx4
1.94e-76FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_a306b8c8a09ca64c889f4e28537e702bp1@ENSMUST00000134305
1.94e-76FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_a306b8c8a09ca64c889f4e28537e702bp1@ENSMUST00000134305
6.06e-75FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_c48c44c6c854e6955eb7d5e0213131d8p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
6.06e-75FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_c48c44c6c854e6955eb7d5e0213131d8p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
7.98e-75FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_12e652f2711e31f5f72ab730bc78b8cfp6@Tbx4
7.98e-75FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_12e652f2711e31f5f72ab730bc78b8cfp6@Tbx4
3.64e-74FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57636003..57636017, -
3.64e-74FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57598716..57598720, -
3.64e-74FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr11:59457994..59457997, -
3.64e-74FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57598716..57598720, -
3.64e-74FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr8:94878479..94878503, -
3.64e-74FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr8:94878479..94878503, -
3.64e-74FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_d9e2c7d01ba10ae6319033ada804c9cfp@chr4:138812977..138812992, +
3.64e-74FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr11:59457994..59457997, -
3.64e-74FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_d9e2c7d01ba10ae6319033ada804c9cfp@chr12:57636003..57636017, -
3.64e-74FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_d9e2c7d01ba10ae6319033ada804c9cfp@chr4:138812977..138812992, +
3.06e-70FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_a984a87876df5fe27af35aca6ae51014p8@Nkx2-1
3.06e-70FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_a984a87876df5fe27af35aca6ae51014p8@Nkx2-1
3.48e-70FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_3258aea4fcfc859406cd77a222f4852ep2@E030019B13Rik
3.48e-70FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_3258aea4fcfc859406cd77a222f4852ep2@E030019B13Rik
3.96e-70FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_59265621efb50291d2f08cc9b8dc49d5p10@Nebl
3.96e-70FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_59265621efb50291d2f08cc9b8dc49d5p10@Nebl
4.5e-70FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_1d71e052e0fb5663923d3c10d13ccd0bp9@Nkx2-1
4.5e-70FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_1d71e052e0fb5663923d3c10d13ccd0bp9@Nkx2-1
9.69e-69FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_50145c01387588612cbd09e8389f122dp@chr12:57598537..57598547, -
9.69e-69FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_50145c01387588612cbd09e8389f122dp3@E030019B13Rik
9.69e-69FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_50145c01387588612cbd09e8389f122dp3@E030019B13Rik
9.69e-69FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_50145c01387588612cbd09e8389f122dp3@Trpm6
9.69e-69FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_50145c01387588612cbd09e8389f122dp3@Trpm6
9.69e-69FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_50145c01387588612cbd09e8389f122dp@chr12:57598537..57598547, -
1.11e-68FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_dfb119fad7d7e9bde4de06196ed1c8ccp@chr14:115241755..115241762, -
1.11e-68FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_dfb119fad7d7e9bde4de06196ed1c8ccp@chr14:115241755..115241762, -
1.27e-68FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_fb0d71ad1a57885a3eac10529bbdbd5dp@chr4:138812999..138813015, +
1.27e-68FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_fb0d71ad1a57885a3eac10529bbdbd5dp@chr4:138812999..138813015, +
4.47e-68FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c1de294a58c396c4f26d43f2bcf09dcdp@chr5:120282691..120282701, +
4.47e-68FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c1de294a58c396c4f26d43f2bcf09dcdp@chr5:120282691..120282701, +
5.44e-68FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_f8623426409c0ad36e14a7d68a228725p3@Sftpb
5.44e-68FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_f8623426409c0ad36e14a7d68a228725p3@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70922576..70922589, -
5.44e-68FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_f8623426409c0ad36e14a7d68a228725p4@Sftpb
5.44e-68FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_f8623426409c0ad36e14a7d68a228725p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_f8623426409c0ad36e14a7d68a228725p@chr14:70921265..70921285, -
5.44e-68FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_f8623426409c0ad36e14a7d68a228725p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_f8623426409c0ad36e14a7d68a228725p@chr1:184610062..184610074, +
5.44e-68FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_f8623426409c0ad36e14a7d68a228725p@chr2:66524237..66524246, -
5.44e-68FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_f8623426409c0ad36e14a7d68a228725p4@Sftpb
5.08e-66FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_8052c8550c5ba3bad57fb231434b2eaep4@E030019B13Rik
5.08e-66FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_8052c8550c5ba3bad57fb231434b2eaep4@E030019B13Rik
4.92e-64FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_62a88db282b165ed97d0499d9edcf6b7p@chr14:70922007..70922052, +
4.92e-64FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_62a88db282b165ed97d0499d9edcf6b7p@chr14:70922007..70922052, +
4.92e-64FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_62a88db282b165ed97d0499d9edcf6b7p@chr12:57623172..57623185, -
4.92e-64FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_62a88db282b165ed97d0499d9edcf6b7p@chr12:57623172..57623185, -
5.59e-64FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_00eaa076779cf7efde16a53c3d9d41d9p@chr5:28785436..28785450, -
5.59e-64FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_00eaa076779cf7efde16a53c3d9d41d9p@chr5:28785436..28785450, -
6.35e-64FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_91565c63a9ac83a0336e95a3330de998p@chr14:70922459..70922482, -
6.35e-64FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_91565c63a9ac83a0336e95a3330de998p@chr14:70922459..70922482, -
2.55e-63FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_796830272404e05d8e65d21e6ab5f267p4@Etv5
2.55e-63FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_796830272404e05d8e65d21e6ab5f267p4@Etv5
1.43e-62FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72259797..72259814, +
1.43e-62FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_48b7f5d541fb7d4144c010b396672543p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264890..72264911, +
1.43e-62FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_48b7f5d541fb7d4144c010b396672543p4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72264418..72264441, +
1.43e-62FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70923240..70923251, -
1.43e-62FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_48b7f5d541fb7d4144c010b396672543p4@Lamp3
1.43e-62FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72263977..72263993, +
1.43e-62FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_48b7f5d541fb7d4144c010b396672543p@chr12:57376690..57376716, -
1.43e-62FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_48b7f5d541fb7d4144c010b396672543p@chr14:70922486..70922510, -
1.43e-62FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_48b7f5d541fb7d4144c010b396672543p@chr6:72259797..72259814, +
1.63e-62FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_7c0c89327d33ff349fa1e08c8d83c39ep@chr6:72264609..72264653, -
1.63e-62FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_7c0c89327d33ff349fa1e08c8d83c39ep@chr6:72264609..72264653, -
1.87e-62FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_d917ae70df43b690a174eba8480cc1b6p@chr6:129378567..129378573, -
1.87e-62FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_d917ae70df43b690a174eba8480cc1b6p@chr6:129378567..129378573, -
1.91e-62FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_d9c4b5831911627e8fe40b53f924f2eap16@Pde5a
1.91e-62FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_d9c4b5831911627e8fe40b53f924f2eap16@Pde5a
3.02e-62FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_2b3c21bf0047ba875da9c42300bcd46bp7@Nkx2-1
3.02e-62FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_2b3c21bf0047ba875da9c42300bcd46bp7@Nkx2-1
5.06e-62FFCP PHASE2:Mm9::chr12:57636936..57636953,-#_dde235fb6128973df4df3845fea0404fp@chr12:57636936..57636953, -
5.06e-62FFCP PHASE1:Mm9::chr12:57636936..57636953,-#_dde235fb6128973df4df3845fea0404fp@chr12:57636936..57636953, -
7.58e-62FFCP PHASE1:Mm9::chr16:19673341..19673350,-#_6761674fca075e9247dbe36e9bd710fap@chr16:19673341..19673350, -
7.58e-62FFCP PHASE2:Mm9::chr6:72264657..72264693,-#_6761674fca075e9247dbe36e9bd710fap@chr6:72264657..72264693, -
7.58e-62FFCP PHASE1:Mm9::chr5:28785382..28785394,-#_6761674fca075e9247dbe36e9bd710fap@chr5:28785382..28785394, -
7.58e-62FFCP PHASE1:Mm9::chr12:57630433..57630438,-#_6761674fca075e9247dbe36e9bd710fap6@E030019B13Rik
7.58e-62FFCP PHASE1:Mm9::chr2:152591095..152591110,-#_6761674fca075e9247dbe36e9bd710fap@chr2:152591095..152591110, -
7.58e-62FFCP PHASE2:Mm9::chr16:19673260..19673277,-#_6761674fca075e9247dbe36e9bd710fap@chr16:19673260..19673277, -
7.58e-62FFCP PHASE1:Mm9::chr17:67043399..67043410,-#_6761674fca075e9247dbe36e9bd710fap9@Ptprm
7.58e-62FFCP PHASE2:Mm9::chr14:70931508..70931519,+#_6761674fca075e9247dbe36e9bd710fap@chr14:70931508..70931519, +
7.58e-62FFCP PHASE2:Mm9::chr9:14522825..14522837,-#_6761674fca075e9247dbe36e9bd710fap3@Piwil4
7.58e-62FFCP PHASE1:Mm9::chr14:41951096..41951112,+#_6761674fca075e9247dbe36e9bd710fap@chr14:41951096..41951112, +
7.58e-62FFCP PHASE1:Mm9::chr6:72260761..72260774,-#_6761674fca075e9247dbe36e9bd710fap@chr6:72260761..72260774, -
7.58e-62FFCP PHASE2:Mm9::chr16:19673341..19673350,-#_6761674fca075e9247dbe36e9bd710fap@chr16:19673341..19673350, -