FFCP PHASE1:Mm9::chr2:122436974..122437019,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=67092|HGNC=|MCL_coexpression_id=2328|UniProt=Q9D964|association_with_transcript=0bp_to_NM_025961,uc008maw.2_5end|description=CAGE_peak_1_at_Gatm_5end|id=chr2:122436974..122437019,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002323!3.24e-09!37;UBERON:0004458!3.24e-09!37;UBERON:0003886!8.77e-09!38;UBERON:0002553!3.03e-08!39|ontology_enrichment_uberon_v019_2=UBERON:0002323,3.21e-09,37;UBERON:0004458,3.21e-09,37;UBERON:0003886,8.68e-09,38;UBERON:0002553,3.01e-08,39|phase1_expression=13.9329496981171,0.348975407639361,0,0,0,2.18243053485457,1.86890112476421,0.774739940649458,0,0,0,0,0.171200729931206,0,82.6112209302843,58.9203028104394,47.570207712714,5.99378114180652,3.29074640653773,8.48779303596061,214.224047890545,0,0,2.87986361028132,3.67054849707472,1.14846392823004,0.430761996159075,0.215471232685889,0.380046838912748,1.26015064879965,2.66076612786366,0,1.23012957516914,0,0.577703239502549,0.498703936075477,0.204169356262369,40.59756818148,42.1921086042852,50.2582794214846,31.1762688656438,34.1522742479223,37.86980753643,0,0,0,5.47673941043627,10.6832326626419,3.07560655828261,0.777719596297134,32.3368633954587,21.5628846547457,0.671130424230945,0,0,3.08711323243136,16.6189395164479,7.73508138416164,19.2200637816618,17.4567023159771,16.4796164911607,6.43804610931351,9.78224275722253,234.423876351804,236.339060653507,247.957560116189,240.578888746279,200.946173683173,13.1685807631767,12.8255641415106,11.9885227970288,114.546044745925,125.674199801468,13.7189695120749,12.555756703389,18.3843757322004,200.410903418887,183.742079504585,179.10521777678,23.3438729282443,21.3166209593614,22.9201883044974,216.925190224073,136.188551627667,154.631826750132,80.4336038343113,66.4875749331811,26.0959224155421,131.157766853075,207.746218733553,133.917393780175,123.040614408338,0.679971333707751,4.85732872474035,9.09686984426737,3.58421509677868,129.630199781607,7.49893419343454,5.71529210126311,6.71345191569646,73.6611085432039,0,0,0,0.649473123033642,1.52015919285059,0,133.366771511862,11.1343289968284,10.3909497345377,9.88866362566974,13.0920155674221,13.3756988408514,12.0578112442098,29.3971767839262,5.40366342717605,66.9898362560153,8.82056077211461,70.7688441559899,219.032314828792,32.9053862505986,31.0320162006542,7.45567044872489,103.937182939099,68.4890731279998,68.2070337406939,23.7233946521722,31.7948447426506,27.8283797290012,242.960417114622,237.442812862867,28.6491922817331,108.118727159596,68.5317425645286,270.955610105666,129.955251717274,24.3396079602256,23.7617313865278,10.108910337347,12.416069497302,7.93734702072493,10.1156925950728,11.884100567153,22.6057226753573,12.1104968489364,23.9572656932669,19.9584673312222,15.2634988736019,1.94011193639558,12.2918952109083,16.5394056714112,29.372228145295,13.3462679628287,63.0336421405121,34.7771810529424,53.1421492405377,86.3722220395279,76.9470242272998,61.379315869448,16.5700618028402,18.2930326785255,12.244220179349,15.1516630774535,9.44468312387538,7.25055430570678,6.51095045301142,6.17028823219124,4.67061369468678,7.40519324610662,11.8200574136949,6.56657357321431,10.2339991197733,12.953456802172,7.91817870686193,131.851797749708,27.4755315052689,73.0225510394194,8.99131926656051,4.47905326123991,9.28946687441754,11.0826016737,15.327947871374,31.5776822259716,224.085787560595,42.707615539006,192.697777027093,179.704674292193,163.343263545785,96.7021872110836,37.7504151634773,12.752144942607,13.1433240347882,7.96605184002943,15.994791765362,46.210171625963,112.415532970613,267.266527316988,317.224313363911,586.392408753238,1145.01191787777,1754.77478108305,1705.10201107144,21.3445891502747,13.8481437744358,23.7836384086976,26.7585913737976,32.8633396649375,35.9353968031101,35.6476192493988,42.2913322052692,35.5076146637328,43.655264696905,70.4464211984037,68.1017934233361,58.3510448724228,54.8096165145232,33.3679189150757,22.1924019827149,4.0645701836653,5.49525094134406,5.86673915191293,3.56464680127895,2.34690248288502,3.01511263395268,4.04674189506223,4.87834119644497,8.51229778173431,4.87222317227305,6.69710028361446,4.91589944147214,8.11619414769709,5.35201516751593,60.3165135757089,95.1834946682742,15.2446924635901,7.17435540392304,412.454465678638,248.019928829102,0,41.4052320615172,2.52406575533005,1.56175497718655,20.8960695800815,11.9484398976276,17.8238939265915,17.8338214396964,2.42886421004937,4.09158201075837,5.92931666919785,99.930929407182,57.059914253724,67.664929393557,47.7258790905978,46.8515149242001,1592.94166007955,6.5550771761845,23.5812374432506,154.467560320081,312.724704560738,712.019802638136,270.574422947128,954.639573607929,1121.89724977672,686.115801478657,1282.94446635773,1244.84600700562,3.74483566329167,7.0223826672211,5.56242340265844,7.71613326113732,6.20690817747958,8.74007206250146,13.657568709976,10.656273219011,2410.07844181431,341.473298232478,11.0264199027481,16.3237390412065,37.9441402735378,35.5243127826838,19.8158091045207,14.6085400773105,30.0225261728746,439.643391066918,72.7909952198852,16.717336305021,29.4459298517842,73.0869613178201,76.9588502069372,63.6003321514133,19.2075625893056,22.8120867287563,20.1771961754459,78.2829906772393,3.16335993581135,11.3858901591035,10.9085394230019,12.5452977608681,51.9702901715903,38.0317456805194,29.7552440611209,7.59092231753686,5.18459893167171,6.21339313086926,268.317838813675,175.233391963543,160.494735743385,129.310040248792,100.615502489153,154.08798644759,212.416601948815,313.662363089076,551.350432990388,261.394018733739,183.187083980002,5.37218905067903,4.05450430580328,6.05994647272481,3.76770386635606,6.62398773969681,3.77494574084403,3.96644983415897,5.02144392393563,4.13962444787405,3.96275394605999,2.21817607301049,3.70339946811059,3.17499077413087,4.67507608726276,21.9928472106755,9.32341004171072,0.62799699626633,7.38692312001945,12.5573236120924,2207.70895873225,20.1466786693992,6.85978813053011,6.52043735245972,75.6767469106869,80.556916388756,80.2053718815155,50.5248356090442,63.7126743386697,58.1653300990069,62.7770925215579,55.3895079965791,58.9085131679466,63.6845183454738,7.88783841639743,13.5668456956351,22.1953687480374,52.5110508867515,52.8225169822515,97.0693724616075,148.683060899281,124.651209629531,144.092725106725,142.015833011254,137.6392598404,136.188218480747,120.610261621209,123.888669903422,120.384742930965,125.741534498731,123.185038479381,121.918627333062,124.862027943402,123.205496152491,124.461538615906,118.731314320597,134.001138750394,128.340885886346,131.753132581463,125.14500507179,130.244716685414,127.325740335916,126.297825876651,116.156450233152,129.786709827847,118.599396780178,115.403154173852,122.709978219285,98.189464989401,70.1967724005628,147.142981712162,133.649795618042,98.3222026833855,131.91366863347,140.743776221596|short_description=p1@Gatm}} | ||
|EntrezGene=67092 | |||
|HGNC= | |||
|MCL_coexpression_id=2328 | |||
|UniProt=Q9D964 | |||
|association_with_transcript=0bp_to_NM_025961,uc008maw.2_5end | |||
|description=CAGE_peak_1_at_Gatm_5end | |||
|id=chr2:122436974..122437019,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002323!3.24e-09!37;UBERON:0004458!3.24e-09!37;UBERON:0003886!8.77e-09!38;UBERON:0002553!3.03e-08!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002323,3.21e-09,37;UBERON:0004458,3.21e-09,37;UBERON:0003886,8.68e-09,38;UBERON:0002553,3.01e-08,39 | |||
|phase1_expression=13.9329496981171,0.348975407639361,0,0,0,2.18243053485457,1.86890112476421,0.774739940649458,0,0,0,0,0.171200729931206,0,82.6112209302843,58.9203028104394,47.570207712714,5.99378114180652,3.29074640653773,8.48779303596061,214.224047890545,0,0,2.87986361028132,3.67054849707472,1.14846392823004,0.430761996159075,0.215471232685889,0.380046838912748,1.26015064879965,2.66076612786366,0,1.23012957516914,0,0.577703239502549,0.498703936075477,0.204169356262369,40.59756818148,42.1921086042852,50.2582794214846,31.1762688656438,34.1522742479223,37.86980753643,0,0,0,5.47673941043627,10.6832326626419,3.07560655828261,0.777719596297134,32.3368633954587,21.5628846547457,0.671130424230945,0,0,3.08711323243136,16.6189395164479,7.73508138416164,19.2200637816618,17.4567023159771,16.4796164911607,6.43804610931351,9.78224275722253,234.423876351804,236.339060653507,247.957560116189,240.578888746279,200.946173683173,13.1685807631767,12.8255641415106,11.9885227970288,114.546044745925,125.674199801468,13.7189695120749,12.555756703389,18.3843757322004,200.410903418887,183.742079504585,179.10521777678,23.3438729282443,21.3166209593614,22.9201883044974,216.925190224073,136.188551627667,154.631826750132,80.4336038343113,66.4875749331811,26.0959224155421,131.157766853075,207.746218733553,133.917393780175,123.040614408338,0.679971333707751,4.85732872474035,9.09686984426737,3.58421509677868,129.630199781607,7.49893419343454,5.71529210126311,6.71345191569646,73.6611085432039,0,0,0,0.649473123033642,1.52015919285059,0,133.366771511862,11.1343289968284,10.3909497345377,9.88866362566974,13.0920155674221,13.3756988408514,12.0578112442098,29.3971767839262,5.40366342717605,66.9898362560153,8.82056077211461,70.7688441559899,219.032314828792,32.9053862505986,31.0320162006542,7.45567044872489,103.937182939099,68.4890731279998,68.2070337406939,23.7233946521722,31.7948447426506,27.8283797290012,242.960417114622,237.442812862867,28.6491922817331,108.118727159596,68.5317425645286,270.955610105666,129.955251717274,24.3396079602256,23.7617313865278,10.108910337347,12.416069497302,7.93734702072493,10.1156925950728,11.884100567153,22.6057226753573,12.1104968489364,23.9572656932669,19.9584673312222,15.2634988736019,1.94011193639558,12.2918952109083,16.5394056714112,29.372228145295,13.3462679628287,63.0336421405121,34.7771810529424,53.1421492405377,86.3722220395279,76.9470242272998,61.379315869448,16.5700618028402,18.2930326785255,12.244220179349,15.1516630774535,9.44468312387538,7.25055430570678,6.51095045301142,6.17028823219124,4.67061369468678,7.40519324610662,11.8200574136949,6.56657357321431,10.2339991197733,12.953456802172,7.91817870686193,131.851797749708,27.4755315052689,73.0225510394194,8.99131926656051,4.47905326123991,9.28946687441754,11.0826016737,15.327947871374,31.5776822259716,224.085787560595,42.707615539006,192.697777027093,179.704674292193,163.343263545785,96.7021872110836,37.7504151634773,12.752144942607,13.1433240347882,7.96605184002943,15.994791765362,46.210171625963,112.415532970613,267.266527316988,317.224313363911,586.392408753238,1145.01191787777,1754.77478108305,1705.10201107144,21.3445891502747,13.8481437744358,23.7836384086976,26.7585913737976,32.8633396649375,35.9353968031101,35.6476192493988,42.2913322052692,35.5076146637328,43.655264696905,70.4464211984037,68.1017934233361,58.3510448724228,54.8096165145232,33.3679189150757,22.1924019827149,4.0645701836653,5.49525094134406,5.86673915191293,3.56464680127895,2.34690248288502,3.01511263395268,4.04674189506223,4.87834119644497,8.51229778173431,4.87222317227305,6.69710028361446,4.91589944147214,8.11619414769709,5.35201516751593,60.3165135757089,95.1834946682742,15.2446924635901,7.17435540392304,412.454465678638,248.019928829102,0,41.4052320615172,2.52406575533005,1.56175497718655,20.8960695800815,11.9484398976276,17.8238939265915,17.8338214396964,2.42886421004937,4.09158201075837,5.92931666919785,99.930929407182,57.059914253724,67.664929393557,47.7258790905978,46.8515149242001,1592.94166007955,6.5550771761845,23.5812374432506,154.467560320081,312.724704560738,712.019802638136,270.574422947128,954.639573607929,1121.89724977672,686.115801478657,1282.94446635773,1244.84600700562,3.74483566329167,7.0223826672211,5.56242340265844,7.71613326113732,6.20690817747958,8.74007206250146,13.657568709976,10.656273219011,2410.07844181431,341.473298232478,11.0264199027481,16.3237390412065,37.9441402735378,35.5243127826838,19.8158091045207,14.6085400773105,30.0225261728746,439.643391066918,72.7909952198852,16.717336305021,29.4459298517842,73.0869613178201,76.9588502069372,63.6003321514133,19.2075625893056,22.8120867287563,20.1771961754459,78.2829906772393,3.16335993581135,11.3858901591035,10.9085394230019,12.5452977608681,51.9702901715903,38.0317456805194,29.7552440611209,7.59092231753686,5.18459893167171,6.21339313086926,268.317838813675,175.233391963543,160.494735743385,129.310040248792,100.615502489153,154.08798644759,212.416601948815,313.662363089076,551.350432990388,261.394018733739,183.187083980002,5.37218905067903,4.05450430580328,6.05994647272481,3.76770386635606,6.62398773969681,3.77494574084403,3.96644983415897,5.02144392393563,4.13962444787405,3.96275394605999,2.21817607301049,3.70339946811059,3.17499077413087,4.67507608726276,21.9928472106755,9.32341004171072,0.62799699626633,7.38692312001945,12.5573236120924,2207.70895873225,20.1466786693992,6.85978813053011,6.52043735245972,75.6767469106869,80.556916388756,80.2053718815155,50.5248356090442,63.7126743386697,58.1653300990069,62.7770925215579,55.3895079965791,58.9085131679466,63.6845183454738,7.88783841639743,13.5668456956351,22.1953687480374,52.5110508867515,52.8225169822515,97.0693724616075,148.683060899281,124.651209629531,144.092725106725,142.015833011254,137.6392598404,136.188218480747,120.610261621209,123.888669903422,120.384742930965,125.741534498731,123.185038479381,121.918627333062,124.862027943402,123.205496152491,124.461538615906,118.731314320597,134.001138750394,128.340885886346,131.753132581463,125.14500507179,130.244716685414,127.325740335916,126.297825876651,116.156450233152,129.786709827847,118.599396780178,115.403154173852,122.709978219285,98.189464989401,70.1967724005628,147.142981712162,133.649795618042,98.3222026833855,131.91366863347,140.743776221596 | |||
|short_description=p1@Gatm | |||
}} | |||
Revision as of 21:54, 13 September 2013
| Short description: | p1@Gatm |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gatm_5end |
| Coexpression cluster: | MCL_coexpression_mm9:2328 |
| Association with transcript: | 0bp_to_NM_025961, uc008maw.2_5end |
| EntrezGene: | Gatm |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| body cavity | 3.21e-09 | 37 |
| body cavity or lining | 3.21e-09 | 37 |
| body cavity precursor | 8.68e-09 | 38 |
| anatomical cavity | 3.01e-08 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
