FFCP PHASE1:Mm9::chr2:151398364..151398409,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=228765|HGNC=|MCL_coexpression_id=195|UniProt=Q3UN51,Q99JZ0|association_with_transcript=0bp_to_NM_145535,uc008nec.1_5end|description=CAGE_peak_1_at_Sdcbp2_5end|id=chr2:151398364..151398409,+|ontology_enrichment_celltype=CL:0002563!7.61e-07!9;CL:0002251!7.61e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,6.97e-09,9;CL:0002251,6.97e-09,9;CL:0000066,7.79e-09,25;CL:0002076,1.68e-08,15;CL:0000239,1.93e-07,6;CL:0000677,1.93e-07,6;CL:0000584,1.93e-07,6;CL:0000223,1.98e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!9.99e-14!59;UBERON:0000160!1.86e-12!43;UBERON:0000344!2.44e-11!15;UBERON:0001242!6.22e-10!13;UBERON:0000060!6.22e-10!13;UBERON:0001262!6.22e-10!13;UBERON:0004786!6.22e-10!13;UBERON:0004119!2.97e-09!130;UBERON:0000925!2.97e-09!130;UBERON:0006595!2.97e-09!130;UBERON:0001007!8.02e-09!128;UBERON:0001555!8.02e-09!128;UBERON:0007026!8.02e-09!128;UBERON:0004921!5.77e-08!126;UBERON:0004185!5.77e-08!126;UBERON:0004923!6.12e-07!24;UBERON:0003350!7.61e-07!9;UBERON:0004808!7.61e-07!9;UBERON:0001277!7.61e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.35e-24,47;UBERON:0000160,1.57e-23,31;UBERON:0000344,4.30e-15,15;UBERON:0001242,3.79e-13,13;UBERON:0001262,3.79e-13,13;UBERON:0004786,3.79e-13,13;UBERON:0004119,1.40e-10,118;UBERON:0000925,1.40e-10,118;UBERON:0006595,1.40e-10,118;UBERON:0001007,1.65e-10,116;UBERON:0001555,1.65e-10,116;UBERON:0007026,1.65e-10,116;UBERON:0004923,1.41e-09,24;UBERON:0004921,2.26e-09,114;UBERON:0003350,6.97e-09,9;UBERON:0004808,6.97e-09,9;UBERON:0001277,6.97e-09,9;UBERON:0000485,8.65e-07,11|phase1_expression=0.320297694209588,93.1764338397094,114.204809086774,77.4308380945485,69.6245064625423,47.3419546791529,64.4770888043651,1.16210991097419,12.5301962714983,7.49006484230379,0.34243593645101,0.159544317990673,0.342401459862411,0.0874204024189974,0,0,0,0,0,0,0.680346321208558,0,0,64.6369388085363,65.8404636662778,113.697928894774,115.874976966791,100.409594431624,115.534239029475,79.893551133898,112.417368902239,0,0,0,4.04392267651784,4.98703936075477,3.47087905646027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0.725362142011344,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605809546665472,0.0755715601067855,2.02905142091174,0,6.11974200336975,0,0,0,2.38755514223978,0,0,0,0,0,0,0,51.3083767196577,56.7526098664221,55.6076889516262,11.418387971906,0,0.29688427812965,0,0,0.461230994512117,0,0,0.502666365318702,17.5508427091405,0.144599356919912,0,0,0,0,171.480420320672,0,0,49.8141257656753,0,0,0,0,0,0,0,0,0.20778804455956,0.162241263067758,0.407357455401265,0.746441823660558,8.08712826987759,0.420883711772948,0.260240885925407,0,0,1.20563854268572,0,0,0,0,0,0,0,0,0,11.4923214952315,16.8741351854514,0,0,0,0,0,0,0,0.23674473558521,0,0,0.465067889500816,0,0,0,0,0,0,0.439100230582101,0.536825675041487,0.210289948564127,0,167.522322972786,24.0650015663825,0.213288250535234,0.232236671860439,2.44848176511977,1.81515172161008,5.78182913996663,8.56015317506516,37.4877958620164,21.9049609782934,16.5881237808178,19.4977342600328,15.5971269695296,35.9527763461689,74.7837652566442,65.9157614471955,0,0.228497025219458,0,0.407302655690628,0.387904974335251,0.210407459670956,0.0632365371242573,0.147610147979602,0.31399745568275,0,0.296452627087149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10851914099963,0,0.162964976442026,0.339490171550376,0,0,0,0,0,0.221464689648775,0.318909537314974,1.63863314715738,0.172684981865896,0.289298117163023,0,0,2.95058563811422,0,0,0.117211686592203,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0.494910368917606,0,0,0.302323556964751,0,0,0,4.9101375701962,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0.704015124191131,1.27099242518292,0,10.7176064411962,41.6578220875436,7.90099316558842,7.75920236020387,3.77524069413641,30.6054878461343,0,0,0,0,0,0,0,0,0,0.276399947608848,94.5123911834962,0.158167996790568,1.42323626988794,7.02034715341708,19.0270349373167,27.9504081595107,36.143644831132,31.9042339099797,60.7273785402949,227.085433207221,0.621339313086926,0,0,0,0,0.258319646955462,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,0,0.202725215290164,0,0,0.179026695667481,0.198681354781265,0.120195449519969,0,0.100966449948148,0.0762068066549998,0.100826185136841,0.194915761479505,0.192423683280659,0.233753804363138,23.3532295123668,0,0,0,9.27310051354514,4.129014459926,4.57879060668163,45.446096364762,1.00314420807073,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0.209613162627982,2.02227859295016,2.00022055021454,1.44224540067226,0.962757628775446,1.01078884705519,2.5347929989024,1.32038438970253,2.1537546718073,1.40855335290712,1.37845125493472,2.85776214769844,1.73826488917283,1.73618298417335,0.412085900803307,1.61918812147837,0.685738504770831,1.59728225543404,2.38436189947321,2.32554266611726,1.41164070622996,2.11536519729191,2.0122077016005,2.10455769150274,1.49384525230448,0.561142271657738,1.66089025373844,0.788035859004508,1.22769312950907,2.78886314134739,6.75173138433995,4.24677982494508,5.14649538579898,8.16510005383534,7.07766828654721,1.54413993383661,0|short_description=p1@Sdcbp2}} | ||
|EntrezGene=228765 | |||
|HGNC= | |||
|MCL_coexpression_id=195 | |||
|UniProt=Q3UN51,Q99JZ0 | |||
|association_with_transcript=0bp_to_NM_145535,uc008nec.1_5end | |||
|description=CAGE_peak_1_at_Sdcbp2_5end | |||
|id=chr2:151398364..151398409,+ | |||
|ontology_enrichment_celltype=CL:0002563!7.61e-07!9;CL:0002251!7.61e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.97e-09,9;CL:0002251,6.97e-09,9;CL:0000066,7.79e-09,25;CL:0002076,1.68e-08,15;CL:0000239,1.93e-07,6;CL:0000677,1.93e-07,6;CL:0000584,1.93e-07,6;CL:0000223,1.98e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!9.99e-14!59;UBERON:0000160!1.86e-12!43;UBERON:0000344!2.44e-11!15;UBERON:0001242!6.22e-10!13;UBERON:0000060!6.22e-10!13;UBERON:0001262!6.22e-10!13;UBERON:0004786!6.22e-10!13;UBERON:0004119!2.97e-09!130;UBERON:0000925!2.97e-09!130;UBERON:0006595!2.97e-09!130;UBERON:0001007!8.02e-09!128;UBERON:0001555!8.02e-09!128;UBERON:0007026!8.02e-09!128;UBERON:0004921!5.77e-08!126;UBERON:0004185!5.77e-08!126;UBERON:0004923!6.12e-07!24;UBERON:0003350!7.61e-07!9;UBERON:0004808!7.61e-07!9;UBERON:0001277!7.61e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.35e-24,47;UBERON:0000160,1.57e-23,31;UBERON:0000344,4.30e-15,15;UBERON:0001242,3.79e-13,13;UBERON:0001262,3.79e-13,13;UBERON:0004786,3.79e-13,13;UBERON:0004119,1.40e-10,118;UBERON:0000925,1.40e-10,118;UBERON:0006595,1.40e-10,118;UBERON:0001007,1.65e-10,116;UBERON:0001555,1.65e-10,116;UBERON:0007026,1.65e-10,116;UBERON:0004923,1.41e-09,24;UBERON:0004921,2.26e-09,114;UBERON:0003350,6.97e-09,9;UBERON:0004808,6.97e-09,9;UBERON:0001277,6.97e-09,9;UBERON:0000485,8.65e-07,11 | |||
|phase1_expression=0.320297694209588,93.1764338397094,114.204809086774,77.4308380945485,69.6245064625423,47.3419546791529,64.4770888043651,1.16210991097419,12.5301962714983,7.49006484230379,0.34243593645101,0.159544317990673,0.342401459862411,0.0874204024189974,0,0,0,0,0,0,0.680346321208558,0,0,64.6369388085363,65.8404636662778,113.697928894774,115.874976966791,100.409594431624,115.534239029475,79.893551133898,112.417368902239,0,0,0,4.04392267651784,4.98703936075477,3.47087905646027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0.725362142011344,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605809546665472,0.0755715601067855,2.02905142091174,0,6.11974200336975,0,0,0,2.38755514223978,0,0,0,0,0,0,0,51.3083767196577,56.7526098664221,55.6076889516262,11.418387971906,0,0.29688427812965,0,0,0.461230994512117,0,0,0.502666365318702,17.5508427091405,0.144599356919912,0,0,0,0,171.480420320672,0,0,49.8141257656753,0,0,0,0,0,0,0,0,0.20778804455956,0.162241263067758,0.407357455401265,0.746441823660558,8.08712826987759,0.420883711772948,0.260240885925407,0,0,1.20563854268572,0,0,0,0,0,0,0,0,0,11.4923214952315,16.8741351854514,0,0,0,0,0,0,0,0.23674473558521,0,0,0.465067889500816,0,0,0,0,0,0,0.439100230582101,0.536825675041487,0.210289948564127,0,167.522322972786,24.0650015663825,0.213288250535234,0.232236671860439,2.44848176511977,1.81515172161008,5.78182913996663,8.56015317506516,37.4877958620164,21.9049609782934,16.5881237808178,19.4977342600328,15.5971269695296,35.9527763461689,74.7837652566442,65.9157614471955,0,0.228497025219458,0,0.407302655690628,0.387904974335251,0.210407459670956,0.0632365371242573,0.147610147979602,0.31399745568275,0,0.296452627087149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10851914099963,0,0.162964976442026,0.339490171550376,0,0,0,0,0,0.221464689648775,0.318909537314974,1.63863314715738,0.172684981865896,0.289298117163023,0,0,2.95058563811422,0,0,0.117211686592203,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0.494910368917606,0,0,0.302323556964751,0,0,0,4.9101375701962,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0.704015124191131,1.27099242518292,0,10.7176064411962,41.6578220875436,7.90099316558842,7.75920236020387,3.77524069413641,30.6054878461343,0,0,0,0,0,0,0,0,0,0.276399947608848,94.5123911834962,0.158167996790568,1.42323626988794,7.02034715341708,19.0270349373167,27.9504081595107,36.143644831132,31.9042339099797,60.7273785402949,227.085433207221,0.621339313086926,0,0,0,0,0.258319646955462,0.168956125490778,0.117357238645754,0.13020438484395,0,0,0,0,0.202725215290164,0,0,0.179026695667481,0.198681354781265,0.120195449519969,0,0.100966449948148,0.0762068066549998,0.100826185136841,0.194915761479505,0.192423683280659,0.233753804363138,23.3532295123668,0,0,0,9.27310051354514,4.129014459926,4.57879060668163,45.446096364762,1.00314420807073,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0,0.209613162627982,2.02227859295016,2.00022055021454,1.44224540067226,0.962757628775446,1.01078884705519,2.5347929989024,1.32038438970253,2.1537546718073,1.40855335290712,1.37845125493472,2.85776214769844,1.73826488917283,1.73618298417335,0.412085900803307,1.61918812147837,0.685738504770831,1.59728225543404,2.38436189947321,2.32554266611726,1.41164070622996,2.11536519729191,2.0122077016005,2.10455769150274,1.49384525230448,0.561142271657738,1.66089025373844,0.788035859004508,1.22769312950907,2.78886314134739,6.75173138433995,4.24677982494508,5.14649538579898,8.16510005383534,7.07766828654721,1.54413993383661,0 | |||
|short_description=p1@Sdcbp2 | |||
}} |
Revision as of 22:23, 13 September 2013
Short description: | p1@Sdcbp2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sdcbp2_5end |
Coexpression cluster: | MCL_coexpression_mm9:195 |
Association with transcript: | 0bp_to_NM_145535, uc008nec.1_5end |
EntrezGene: | Sdcbp2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.97e-09 | 9 |
epithelial cell of alimentary canal | 6.97e-09 | 9 |
epithelial cell | 7.79e-09 | 25 |
endo-epithelial cell | 1.68e-08 | 15 |
brush border epithelial cell | 1.93e-07 | 6 |
gut absorptive cell | 1.93e-07 | 6 |
enterocyte | 1.93e-07 | 6 |
endodermal cell | 1.98e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.35e-24 | 47 |
intestine | 1.57e-23 | 31 |
mucosa | 4.30e-15 | 15 |
intestinal mucosa | 3.79e-13 | 13 |
wall of intestine | 3.79e-13 | 13 |
gastrointestinal system mucosa | 3.79e-13 | 13 |
endoderm-derived structure | 1.40e-10 | 118 |
endoderm | 1.40e-10 | 118 |
presumptive endoderm | 1.40e-10 | 118 |
digestive system | 1.65e-10 | 116 |
digestive tract | 1.65e-10 | 116 |
primitive gut | 1.65e-10 | 116 |
organ component layer | 1.41e-09 | 24 |
subdivision of digestive tract | 2.26e-09 | 114 |
epithelium of mucosa | 6.97e-09 | 9 |
gastrointestinal system epithelium | 6.97e-09 | 9 |
intestinal epithelium | 6.97e-09 | 9 |
simple columnar epithelium | 8.65e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.